Coexpression cluster: Cluster_226 (Zea mays HCCA coexpression clusters - Leiboff and Hake (2019))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0032993 protein-DNA complex 20.55% (15/73) 6.26 0.0 0.0
GO:0000786 nucleosome 20.55% (15/73) 6.29 0.0 0.0
GO:0005575 cellular_component 60.27% (44/73) 2.31 0.0 0.0
GO:0032991 protein-containing complex 39.73% (29/73) 3.22 0.0 0.0
GO:0046982 protein heterodimerization activity 19.18% (14/73) 5.71 0.0 0.0
GO:0046983 protein dimerization activity 19.18% (14/73) 3.61 0.0 0.0
GO:0003735 structural constituent of ribosome 17.81% (13/73) 3.6 0.0 0.0
GO:0005198 structural molecule activity 17.81% (13/73) 3.35 0.0 0.0
GO:0006412 translation 16.44% (12/73) 3.52 0.0 0.0
GO:0043043 peptide biosynthetic process 16.44% (12/73) 3.48 0.0 0.0
GO:0006518 peptide metabolic process 16.44% (12/73) 3.4 0.0 0.0
GO:0043604 amide biosynthetic process 16.44% (12/73) 3.39 0.0 0.0
GO:0043603 amide metabolic process 16.44% (12/73) 3.27 0.0 0.0
GO:0005840 ribosome 15.07% (11/73) 3.47 0.0 0.0
GO:0009059 macromolecule biosynthetic process 17.81% (13/73) 2.78 0.0 1e-06
GO:0043232 intracellular non-membrane-bounded organelle 15.07% (11/73) 3.15 0.0 1e-06
GO:0043228 non-membrane-bounded organelle 15.07% (11/73) 3.15 0.0 1e-06
GO:0003676 nucleic acid binding 31.51% (23/73) 1.8 0.0 1e-06
GO:1901566 organonitrogen compound biosynthetic process 17.81% (13/73) 2.7 0.0 1e-06
GO:0044271 cellular nitrogen compound biosynthetic process 17.81% (13/73) 2.53 0.0 5e-06
GO:1990904 ribonucleoprotein complex 9.59% (7/73) 3.95 0.0 5e-06
GO:0043226 organelle 17.81% (13/73) 2.27 3e-06 3.2e-05
GO:0043229 intracellular organelle 17.81% (13/73) 2.27 3e-06 3.2e-05
GO:0003677 DNA binding 20.55% (15/73) 2.04 3e-06 3.3e-05
GO:0044249 cellular biosynthetic process 19.18% (14/73) 2.04 6e-06 7.4e-05
GO:0034641 cellular nitrogen compound metabolic process 23.29% (17/73) 1.68 1.5e-05 0.000165
GO:1901576 organic substance biosynthetic process 19.18% (14/73) 1.92 1.6e-05 0.000175
GO:0009058 biosynthetic process 19.18% (14/73) 1.83 3e-05 0.000321
GO:0043933 protein-containing complex organization 8.22% (6/73) 3.29 3.6e-05 0.000364
GO:0065003 protein-containing complex assembly 6.85% (5/73) 3.72 4.1e-05 0.000407
GO:0005681 spliceosomal complex 4.11% (3/73) 5.34 5.7e-05 0.000542
GO:0044391 ribosomal subunit 5.48% (4/73) 4.22 6.6e-05 0.000606
GO:0110165 cellular anatomical entity 23.29% (17/73) 1.42 0.000141 0.001259
GO:0022607 cellular component assembly 6.85% (5/73) 3.25 0.000187 0.001622
GO:0000387 spliceosomal snRNP assembly 2.74% (2/73) 6.38 0.000259 0.002186
GO:0009987 cellular process 42.47% (31/73) 0.84 0.0003 0.002458
GO:0015934 large ribosomal subunit 4.11% (3/73) 4.46 0.000357 0.002849
GO:0051641 cellular localization 8.22% (6/73) 2.54 0.000586 0.004549
GO:0019773 proteasome core complex, alpha-subunit complex 2.74% (2/73) 5.76 0.000626 0.004739
GO:0009060 aerobic respiration 2.74% (2/73) 5.69 0.000692 0.004976
GO:0019646 aerobic electron transport chain 2.74% (2/73) 5.69 0.000692 0.004976
GO:0000398 mRNA splicing, via spliceosome 4.11% (3/73) 4.08 0.000765 0.005373
GO:0008104 protein localization 6.85% (5/73) 2.74 0.000927 0.005472
GO:0070727 cellular macromolecule localization 6.85% (5/73) 2.74 0.000927 0.005472
GO:0033036 macromolecule localization 6.85% (5/73) 2.74 0.000927 0.005472
GO:0046907 intracellular transport 6.85% (5/73) 2.78 0.000839 0.005499
GO:0051649 establishment of localization in cell 6.85% (5/73) 2.77 0.000858 0.005502
GO:0006325 chromatin organization 4.11% (3/73) 4.01 0.000886 0.005563
GO:0045333 cellular respiration 2.74% (2/73) 5.56 0.000831 0.005573
GO:0045184 establishment of protein localization 6.85% (5/73) 2.78 0.000829 0.00569
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 4.11% (3/73) 3.95 0.000992 0.005737
GO:0034728 nucleosome organization 2.74% (2/73) 5.32 0.001148 0.00627
GO:0006334 nucleosome assembly 2.74% (2/73) 5.32 0.001148 0.00627
GO:0006886 intracellular protein transport 5.48% (4/73) 3.13 0.001176 0.006306
GO:0000375 RNA splicing, via transesterification reactions 4.11% (3/73) 3.88 0.001134 0.006435
GO:0008380 RNA splicing 4.11% (3/73) 3.68 0.001713 0.008867
GO:0071824 protein-DNA complex organization 4.11% (3/73) 3.68 0.001713 0.008867
GO:0022904 respiratory electron transport chain 2.74% (2/73) 4.91 0.002038 0.010365
GO:0044237 cellular metabolic process 28.77% (21/73) 0.92 0.002177 0.010883
GO:0022618 protein-RNA complex assembly 2.74% (2/73) 4.83 0.002269 0.011154
GO:0015980 energy derivation by oxidation of organic compounds 2.74% (2/73) 4.79 0.002388 0.011551
GO:0071826 protein-RNA complex organization 2.74% (2/73) 4.76 0.002511 0.011948
GO:0003723 RNA binding 9.59% (7/73) 1.89 0.0028 0.013111
GO:0090150 establishment of protein localization to membrane 2.74% (2/73) 4.62 0.003031 0.013756
GO:0072657 protein localization to membrane 2.74% (2/73) 4.62 0.003031 0.013756
GO:0005839 proteasome core complex 2.74% (2/73) 4.53 0.003451 0.015196
GO:0097159 organic cyclic compound binding 32.88% (24/73) 0.79 0.003426 0.015312
GO:0006397 mRNA processing 4.11% (3/73) 3.24 0.004036 0.017257
GO:0015031 protein transport 5.48% (4/73) 2.64 0.003998 0.017344
GO:0065004 protein-DNA complex assembly 2.74% (2/73) 4.35 0.004368 0.018408
GO:0140513 nuclear protein-containing complex 5.48% (4/73) 2.56 0.004868 0.019946
GO:0051668 localization within membrane 2.74% (2/73) 4.27 0.004864 0.02021
GO:0043170 macromolecule metabolic process 26.03% (19/73) 0.88 0.005269 0.021292
GO:0098800 inner mitochondrial membrane protein complex 2.74% (2/73) 4.17 0.005564 0.021317
GO:0031082 BLOC complex 1.37% (1/73) 7.49 0.005534 0.021483
GO:0006120 mitochondrial electron transport, NADH to ubiquinone 1.37% (1/73) 7.49 0.005534 0.021483
GO:0031083 BLOC-1 complex 1.37% (1/73) 7.49 0.005534 0.021483
GO:0016043 cellular component organization 9.59% (7/73) 1.7 0.005681 0.021486
GO:0005515 protein binding 21.92% (16/73) 0.96 0.006522 0.024355
GO:0045048 protein insertion into ER membrane 1.37% (1/73) 7.08 0.007373 0.025587
GO:0005854 nascent polypeptide-associated complex 1.37% (1/73) 7.08 0.007373 0.025587
GO:0051205 protein insertion into membrane 1.37% (1/73) 7.08 0.007373 0.025587
GO:0009570 chloroplast stroma 1.37% (1/73) 7.08 0.007373 0.025587
GO:0009532 plastid stroma 1.37% (1/73) 7.08 0.007373 0.025587
GO:0016071 mRNA metabolic process 4.11% (3/73) 2.95 0.007011 0.025854
GO:0019538 protein metabolic process 19.18% (14/73) 1.02 0.007761 0.026317
GO:0098798 mitochondrial protein-containing complex 2.74% (2/73) 3.93 0.00771 0.026448
GO:0004129 cytochrome-c oxidase activity 1.37% (1/73) 6.76 0.009207 0.029848
GO:0016675 oxidoreductase activity, acting on a heme group of donors 1.37% (1/73) 6.76 0.009207 0.029848
GO:0044183 protein folding chaperone 1.37% (1/73) 6.76 0.009207 0.029848
GO:0071840 cellular component organization or biogenesis 9.59% (7/73) 1.58 0.009019 0.030235
GO:0030176 obsolete integral component of endoplasmic reticulum membrane 1.37% (1/73) 6.49 0.011039 0.035396
GO:0071705 nitrogen compound transport 5.48% (4/73) 2.2 0.011299 0.03584
GO:0006396 RNA processing 5.48% (4/73) 2.2 0.011461 0.03597
GO:0022900 electron transport chain 2.74% (2/73) 3.62 0.01164 0.036145
GO:0006338 chromatin remodeling 2.74% (2/73) 3.56 0.012668 0.038929
GO:0031970 organelle envelope lumen 1.37% (1/73) 6.08 0.014692 0.044225
GO:0005758 mitochondrial intermembrane space 1.37% (1/73) 6.08 0.014692 0.044225
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (73) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms