Coexpression cluster: Cluster_19 (Zea mays HCCA coexpression clusters - Leiboff and Hake (2019))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0015453 oxidoreduction-driven active transmembrane transporter activity 11.27% (8/71) 7.21 0.0 0.0
GO:0009055 electron transfer activity 12.68% (9/71) 5.11 0.0 0.0
GO:0016651 oxidoreductase activity, acting on NAD(P)H 9.86% (7/71) 5.76 0.0 0.0
GO:0022900 electron transport chain 9.86% (7/71) 5.47 0.0 0.0
GO:0050136 NADH dehydrogenase (quinone) activity 7.04% (5/71) 6.98 0.0 0.0
GO:0008137 NADH dehydrogenase (ubiquinone) activity 7.04% (5/71) 6.98 0.0 0.0
GO:0003955 NAD(P)H dehydrogenase (quinone) activity 7.04% (5/71) 6.63 0.0 0.0
GO:0003954 NADH dehydrogenase activity 7.04% (5/71) 6.53 0.0 0.0
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor 7.04% (5/71) 6.35 0.0 0.0
GO:0022904 respiratory electron transport chain 7.04% (5/71) 6.27 0.0 0.0
GO:0006091 generation of precursor metabolites and energy 11.27% (8/71) 4.16 0.0 0.0
GO:0015399 primary active transmembrane transporter activity 11.27% (8/71) 4.16 0.0 0.0
GO:0022804 active transmembrane transporter activity 11.27% (8/71) 3.54 0.0 1.1e-05
GO:0042773 ATP synthesis coupled electron transport 4.23% (3/71) 7.25 1e-06 2e-05
GO:0022857 transmembrane transporter activity 16.9% (12/71) 2.43 2e-06 3.8e-05
GO:0016491 oxidoreductase activity 19.72% (14/71) 2.18 2e-06 3.8e-05
GO:0005215 transporter activity 16.9% (12/71) 2.39 3e-06 5e-05
GO:0015078 proton transmembrane transporter activity 7.04% (5/71) 4.31 6e-06 9.6e-05
GO:1901678 iron coordination entity transport 2.82% (2/71) 8.53 1e-05 0.00014
GO:0015886 heme transport 2.82% (2/71) 8.53 1e-05 0.00014
GO:0015232 heme transmembrane transporter activity 2.82% (2/71) 8.53 1e-05 0.00014
GO:0005739 mitochondrion 4.23% (3/71) 6.06 1.2e-05 0.000174
GO:0004129 cytochrome-c oxidase activity 2.82% (2/71) 7.8 3.2e-05 0.000406
GO:0016675 oxidoreductase activity, acting on a heme group of donors 2.82% (2/71) 7.8 3.2e-05 0.000406
GO:0000467 exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2.82% (2/71) 6.95 0.000114 0.001293
GO:0031125 rRNA 3'-end processing 2.82% (2/71) 6.95 0.000114 0.001293
GO:0006826 iron ion transport 2.82% (2/71) 6.95 0.000114 0.001293
GO:0022890 inorganic cation transmembrane transporter activity 7.04% (5/71) 3.13 0.000272 0.002986
GO:0017004 cytochrome complex assembly 2.82% (2/71) 6.12 0.000376 0.003982
GO:0008324 monoatomic cation transmembrane transporter activity 7.04% (5/71) 2.95 0.000487 0.004979
GO:0044237 cellular metabolic process 30.99% (22/71) 1.03 0.000581 0.00575
GO:0009152 purine ribonucleotide biosynthetic process 4.23% (3/71) 4.18 0.000623 0.005979
GO:0009260 ribonucleotide biosynthetic process 4.23% (3/71) 4.03 0.000841 0.007379
GO:0046390 ribose phosphate biosynthetic process 4.23% (3/71) 4.03 0.000841 0.007379
GO:0015318 inorganic molecular entity transmembrane transporter activity 7.04% (5/71) 2.79 0.000808 0.007521
GO:0006164 purine nucleotide biosynthetic process 4.23% (3/71) 3.86 0.00119 0.009611
GO:0015075 monoatomic ion transmembrane transporter activity 7.04% (5/71) 2.68 0.001135 0.009682
GO:0000041 transition metal ion transport 2.82% (2/71) 5.31 0.001168 0.009694
GO:0005763 mitochondrial small ribosomal subunit 1.41% (1/71) 9.12 0.001798 0.012263
GO:0000314 organellar small ribosomal subunit 1.41% (1/71) 9.12 0.001798 0.012263
GO:0022853 active monoatomic ion transmembrane transporter activity 4.23% (3/71) 3.67 0.001728 0.01234
GO:0031123 RNA 3'-end processing 2.82% (2/71) 5.03 0.001722 0.012587
GO:0000175 3'-5'-RNA exonuclease activity 2.82% (2/71) 5.03 0.001722 0.012587
GO:0034641 cellular nitrogen compound metabolic process 18.31% (13/71) 1.33 0.001658 0.012727
GO:0072522 purine-containing compound biosynthetic process 4.23% (3/71) 3.7 0.001618 0.012734
GO:0004532 RNA exonuclease activity 2.82% (2/71) 4.87 0.002148 0.014029
GO:0016896 RNA exonuclease activity, producing 5'-phosphomonoesters 2.82% (2/71) 4.87 0.002148 0.014029
GO:0006754 ATP biosynthetic process 2.82% (2/71) 4.8 0.002378 0.014896
GO:0015986 proton motive force-driven ATP synthesis 2.82% (2/71) 4.8 0.002378 0.014896
GO:0015935 small ribosomal subunit 2.82% (2/71) 4.73 0.002618 0.016077
GO:1901293 nucleoside phosphate biosynthetic process 4.23% (3/71) 3.43 0.002786 0.01645
GO:0009165 nucleotide biosynthetic process 4.23% (3/71) 3.43 0.002786 0.01645
GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters 2.82% (2/71) 4.66 0.00287 0.016625
GO:0009145 purine nucleoside triphosphate biosynthetic process 2.82% (2/71) 4.53 0.003407 0.019015
GO:0009206 purine ribonucleoside triphosphate biosynthetic process 2.82% (2/71) 4.53 0.003407 0.019015
GO:0042030 ATPase inhibitor activity 1.41% (1/71) 8.12 0.003592 0.019692
GO:0008408 3'-5' exonuclease activity 2.82% (2/71) 4.34 0.004448 0.022761
GO:0009201 ribonucleoside triphosphate biosynthetic process 2.82% (2/71) 4.34 0.004448 0.022761
GO:0009142 nucleoside triphosphate biosynthetic process 2.82% (2/71) 4.34 0.004448 0.022761
GO:1901137 carbohydrate derivative biosynthetic process 4.23% (3/71) 3.2 0.004304 0.023182
GO:0006139 nucleobase-containing compound metabolic process 14.08% (10/71) 1.38 0.004804 0.024178
GO:0032780 negative regulation of ATP-dependent activity 1.41% (1/71) 7.53 0.005383 0.025822
GO:0043462 regulation of ATP-dependent activity 1.41% (1/71) 7.53 0.005383 0.025822
GO:0008121 ubiquinol-cytochrome-c reductase activity 1.41% (1/71) 7.53 0.005383 0.025822
GO:0004527 exonuclease activity 2.82% (2/71) 4.1 0.006159 0.02909
GO:0008152 metabolic process 35.21% (25/71) 0.7 0.006373 0.029642
GO:0140640 catalytic activity, acting on a nucleic acid 8.45% (6/71) 1.83 0.006795 0.031137
GO:0098798 mitochondrial protein-containing complex 2.82% (2/71) 3.97 0.007308 0.032992
GO:0009150 purine ribonucleotide metabolic process 4.23% (3/71) 2.88 0.007938 0.035318
GO:0046483 heterocycle metabolic process 14.08% (10/71) 1.26 0.008515 0.037346
GO:0009259 ribonucleotide metabolic process 4.23% (3/71) 2.82 0.00893 0.038612
GO:0003824 catalytic activity 40.85% (29/71) 0.58 0.009336 0.038733
GO:0019693 ribose phosphate metabolic process 4.23% (3/71) 2.8 0.009241 0.038863
GO:0006725 cellular aromatic compound metabolic process 14.08% (10/71) 1.24 0.009145 0.038994
GO:1901360 organic cyclic compound metabolic process 14.08% (10/71) 1.21 0.010369 0.042444
GO:0009772 photosynthetic electron transport in photosystem II 1.41% (1/71) 6.53 0.010738 0.042811
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) 1.41% (1/71) 6.53 0.010738 0.042811
GO:0140097 catalytic activity, acting on DNA 5.63% (4/71) 2.22 0.010878 0.042813
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (71) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms