Coexpression cluster: Cluster_58 (Zea mays HCCA coexpression clusters - Leiboff and Hake (2019))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005515 protein binding 34.87% (68/195) 1.63 0.0 0.0
GO:0005488 binding 56.92% (111/195) 0.85 0.0 0.0
GO:0032991 protein-containing complex 17.44% (34/195) 2.03 0.0 0.0
GO:0051649 establishment of localization in cell 7.18% (14/195) 2.84 0.0 2e-06
GO:0046907 intracellular transport 7.18% (14/195) 2.84 0.0 2e-06
GO:0051641 cellular localization 8.21% (16/195) 2.54 0.0 2e-06
GO:0003674 molecular_function 70.77% (138/195) 0.44 0.0 8e-06
GO:0033036 macromolecule localization 6.67% (13/195) 2.7 0.0 8e-06
GO:0070727 cellular macromolecule localization 6.67% (13/195) 2.7 0.0 8e-06
GO:0008104 protein localization 6.67% (13/195) 2.7 0.0 8e-06
GO:0030117 membrane coat 3.59% (7/195) 4.13 0.0 9e-06
GO:0000285 1-phosphatidylinositol-3-phosphate 5-kinase activity 2.05% (4/195) 6.08 0.0 1.4e-05
GO:0006511 ubiquitin-dependent protein catabolic process 4.62% (9/195) 3.32 0.0 1.5e-05
GO:0043632 modification-dependent macromolecule catabolic process 4.62% (9/195) 3.32 0.0 1.5e-05
GO:0019941 modification-dependent protein catabolic process 4.62% (9/195) 3.32 0.0 1.5e-05
GO:0098797 plasma membrane protein complex 2.56% (5/195) 4.98 1e-06 1.9e-05
GO:0006886 intracellular protein transport 5.13% (10/195) 3.03 0.0 2e-05
GO:0101005 deubiquitinase activity 3.59% (7/195) 3.84 1e-06 2e-05
GO:0016192 vesicle-mediated transport 6.15% (12/195) 2.64 1e-06 2.1e-05
GO:0019783 ubiquitin-like protein peptidase activity 3.59% (7/195) 3.83 1e-06 2.1e-05
GO:0005524 ATP binding 17.44% (34/195) 1.33 1e-06 2.2e-05
GO:0071702 organic substance transport 7.18% (14/195) 2.28 1e-06 4e-05
GO:0015031 protein transport 5.64% (11/195) 2.68 1e-06 4e-05
GO:0051603 proteolysis involved in protein catabolic process 4.62% (9/195) 3.06 2e-06 4e-05
GO:0003774 cytoskeletal motor activity 3.59% (7/195) 3.64 2e-06 4.2e-05
GO:0032559 adenyl ribonucleotide binding 17.44% (34/195) 1.26 2e-06 4.4e-05
GO:0140513 nuclear protein-containing complex 5.64% (11/195) 2.6 3e-06 5.8e-05
GO:0098796 membrane protein complex 5.64% (11/195) 2.56 3e-06 7.4e-05
GO:0140658 ATP-dependent chromatin remodeler activity 2.56% (5/195) 4.4 4e-06 8.1e-05
GO:0016459 myosin complex 2.05% (4/195) 5.2 4e-06 8.2e-05
GO:0097367 carbohydrate derivative binding 18.46% (36/195) 1.16 4e-06 8.3e-05
GO:0009057 macromolecule catabolic process 5.13% (10/195) 2.68 4e-06 8.4e-05
GO:0071705 nitrogen compound transport 6.15% (12/195) 2.37 4e-06 8.4e-05
GO:0045184 establishment of protein localization 5.64% (11/195) 2.5 5e-06 8.6e-05
GO:0052742 phosphatidylinositol kinase activity 2.05% (4/195) 5.14 5e-06 8.8e-05
GO:0030554 adenyl nucleotide binding 17.44% (34/195) 1.17 6e-06 0.000113
GO:0035639 purine ribonucleoside triphosphate binding 17.44% (34/195) 1.17 7e-06 0.000117
GO:0016070 RNA metabolic process 8.72% (17/195) 1.76 1.3e-05 0.000216
GO:0016579 protein deubiquitination 2.56% (5/195) 4.01 1.6e-05 0.00025
GO:0016307 obsolete phosphatidylinositol phosphate kinase activity 2.05% (4/195) 4.71 1.6e-05 0.000256
GO:0032555 purine ribonucleotide binding 17.44% (34/195) 1.11 1.7e-05 0.000263
GO:0017056 structural constituent of nuclear pore 2.05% (4/195) 4.66 1.9e-05 0.000278
GO:0006650 glycerophospholipid metabolic process 3.59% (7/195) 3.1 1.9e-05 0.000282
GO:0001727 lipid kinase activity 2.05% (4/195) 4.62 2.1e-05 0.000288
GO:0070646 protein modification by small protein removal 2.56% (5/195) 3.92 2.1e-05 0.000293
GO:0032553 ribonucleotide binding 17.44% (34/195) 1.09 2.1e-05 0.000299
GO:0046486 glycerolipid metabolic process 3.59% (7/195) 3.07 2.3e-05 0.000301
GO:0010252 obsolete auxin homeostasis 1.03% (2/195) 7.66 2.4e-05 0.000311
GO:0030623 U5 snRNA binding 1.03% (2/195) 7.66 2.4e-05 0.000311
GO:1901363 heterocyclic compound binding 18.97% (37/195) 1.01 2.8e-05 0.000352
GO:0036094 small molecule binding 18.97% (37/195) 1.0 3.4e-05 0.000396
GO:0030120 vesicle coat 2.05% (4/195) 4.45 3.3e-05 0.000397
GO:0005643 nuclear pore 2.05% (4/195) 4.45 3.3e-05 0.000397
GO:1903047 mitotic cell cycle process 2.05% (4/195) 4.45 3.3e-05 0.000397
GO:0004843 cysteine-type deubiquitinase activity 2.56% (5/195) 3.74 3.9e-05 0.000442
GO:0046488 phosphatidylinositol metabolic process 3.08% (6/195) 3.26 4.2e-05 0.000473
GO:0017076 purine nucleotide binding 17.44% (34/195) 1.03 5.1e-05 0.000566
GO:0043168 anion binding 17.95% (35/195) 0.98 7.3e-05 0.000705
GO:0006611 protein export from nucleus 1.03% (2/195) 7.08 7.3e-05 0.000712
GO:0061780 mitotic cohesin loading 1.03% (2/195) 7.08 7.3e-05 0.000712
GO:0071921 cohesin loading 1.03% (2/195) 7.08 7.3e-05 0.000712
GO:0017070 U6 snRNA binding 1.03% (2/195) 7.08 7.3e-05 0.000712
GO:0071168 protein localization to chromatin 1.03% (2/195) 7.08 7.3e-05 0.000712
GO:0034502 protein localization to chromosome 1.03% (2/195) 7.08 7.3e-05 0.000712
GO:0110156 methylguanosine-cap decapping 1.54% (3/195) 5.16 7.7e-05 0.000718
GO:0110154 RNA decapping 1.54% (3/195) 5.16 7.7e-05 0.000718
GO:0019899 enzyme binding 2.56% (5/195) 3.56 7e-05 0.00076
GO:0006644 phospholipid metabolic process 3.59% (7/195) 2.71 0.000109 0.00101
GO:0032051 clathrin light chain binding 1.03% (2/195) 6.66 0.000145 0.001227
GO:0006438 valyl-tRNA aminoacylation 1.03% (2/195) 6.66 0.000145 0.001227
GO:0071439 clathrin complex 1.03% (2/195) 6.66 0.000145 0.001227
GO:0004832 valine-tRNA ligase activity 1.03% (2/195) 6.66 0.000145 0.001227
GO:0000166 nucleotide binding 17.44% (34/195) 0.95 0.00014 0.001254
GO:1901265 nucleoside phosphate binding 17.44% (34/195) 0.95 0.00014 0.001254
GO:0016887 ATP hydrolysis activity 4.62% (9/195) 2.21 0.000163 0.001367
GO:0051020 GTPase binding 1.54% (3/195) 4.79 0.00017 0.001389
GO:0031267 small GTPase binding 1.54% (3/195) 4.79 0.00017 0.001389
GO:0030131 clathrin adaptor complex 1.54% (3/195) 4.72 0.000195 0.001571
GO:0008150 biological_process 49.74% (97/195) 0.42 0.000201 0.001596
GO:0051168 nuclear export 1.54% (3/195) 4.66 0.000222 0.001744
GO:0048646 anatomical structure formation involved in morphogenesis 1.03% (2/195) 6.34 0.00024 0.001795
GO:1905393 plant organ formation 1.03% (2/195) 6.34 0.00024 0.001795
GO:0005049 nuclear export signal receptor activity 1.03% (2/195) 6.34 0.00024 0.001795
GO:0017069 snRNA binding 1.03% (2/195) 6.34 0.00024 0.001795
GO:0009987 cellular process 34.87% (68/195) 0.56 0.000271 0.002001
GO:0030119 AP-type membrane coat adaptor complex 1.54% (3/195) 4.39 0.000394 0.002876
GO:0030276 clathrin binding 1.54% (3/195) 4.34 0.000436 0.003147
GO:0022402 cell cycle process 2.56% (5/195) 2.98 0.000451 0.003219
GO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA 1.03% (2/195) 5.85 0.000501 0.003535
GO:0043167 ion binding 22.56% (44/195) 0.71 0.000596 0.004158
GO:0030132 clathrin coat of coated pit 1.03% (2/195) 5.66 0.000666 0.004356
GO:0030118 clathrin coat 1.03% (2/195) 5.66 0.000666 0.004356
GO:0030130 clathrin coat of trans-Golgi network vesicle 1.03% (2/195) 5.66 0.000666 0.004356
GO:0030125 clathrin vesicle coat 1.03% (2/195) 5.66 0.000666 0.004356
GO:0051179 localization 10.77% (21/195) 1.13 0.000635 0.004385
GO:0016071 mRNA metabolic process 3.08% (6/195) 2.53 0.000646 0.00441
GO:0044877 protein-containing complex binding 2.56% (5/195) 2.84 0.0007 0.004531
GO:0034248 regulation of amide metabolic process 1.54% (3/195) 4.0 0.00088 0.005583
GO:0006417 regulation of translation 1.54% (3/195) 4.0 0.00088 0.005583
GO:0009056 catabolic process 5.64% (11/195) 1.63 0.00095 0.005969
GO:0010608 post-transcriptional regulation of gene expression 1.54% (3/195) 3.85 0.00118 0.007268
GO:0005575 cellular_component 20.0% (39/195) 0.72 0.001176 0.007314
GO:0001882 nucleoside binding 1.03% (2/195) 5.2 0.001295 0.007821
GO:0032549 ribonucleoside binding 1.03% (2/195) 5.2 0.001295 0.007821
GO:0140142 nucleocytoplasmic carrier activity 1.03% (2/195) 5.08 0.001549 0.009265
GO:0140657 ATP-dependent activity 6.15% (12/195) 1.46 0.00158 0.009358
GO:0006397 mRNA processing 2.56% (5/195) 2.56 0.001694 0.009944
GO:0043170 macromolecule metabolic process 22.05% (43/195) 0.64 0.001801 0.010471
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport 1.54% (3/195) 3.6 0.001958 0.01128
GO:0048193 Golgi vesicle transport 2.05% (4/195) 2.91 0.002069 0.011813
GO:1901575 organic substance catabolic process 5.13% (10/195) 1.58 0.002097 0.011866
GO:0140326 ATPase-coupled intramembrane lipid transporter activity 1.03% (2/195) 4.85 0.002122 0.011899
GO:0051246 regulation of protein metabolic process 2.05% (4/195) 2.87 0.002286 0.012705
GO:0006810 transport 9.74% (19/195) 1.04 0.00238 0.013111
GO:0090304 nucleic acid metabolic process 9.23% (18/195) 1.08 0.002415 0.013189
GO:0031124 mRNA 3'-end processing 1.03% (2/195) 4.76 0.002441 0.013213
GO:0140640 catalytic activity, acting on a nucleic acid 6.15% (12/195) 1.38 0.002548 0.013674
GO:0032886 regulation of microtubule-based process 1.03% (2/195) 4.57 0.003141 0.016301
GO:0140303 intramembrane lipid transporter activity 1.03% (2/195) 4.57 0.003141 0.016301
GO:0051234 establishment of localization 9.74% (19/195) 1.01 0.003125 0.016492
GO:0006351 DNA-templated transcription 2.56% (5/195) 2.35 0.003116 0.016581
GO:0015914 phospholipid transport 1.03% (2/195) 4.49 0.003522 0.017416
GO:0006075 (1->3)-beta-D-glucan biosynthetic process 1.03% (2/195) 4.49 0.003522 0.017416
GO:0006074 (1->3)-beta-D-glucan metabolic process 1.03% (2/195) 4.49 0.003522 0.017416
GO:0097346 INO80-type complex 1.03% (2/195) 4.49 0.003522 0.017416
GO:0000148 1,3-beta-D-glucan synthase complex 1.03% (2/195) 4.49 0.003522 0.017416
GO:0031011 Ino80 complex 1.03% (2/195) 4.49 0.003522 0.017416
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 5.13% (10/195) 1.47 0.003619 0.017757
GO:0032774 RNA biosynthetic process 3.08% (6/195) 2.03 0.003778 0.018394
GO:0016817 hydrolase activity, acting on acid anhydrides 5.13% (10/195) 1.46 0.003868 0.018543
GO:0140535 intracellular protein-containing complex 3.08% (6/195) 2.02 0.00384 0.018552
GO:1902494 catalytic complex 4.1% (8/195) 1.67 0.003934 0.018715
GO:0003843 1,3-beta-D-glucan synthase activity 1.03% (2/195) 4.34 0.004345 0.020518
GO:1990116 ribosome-associated ubiquitin-dependent protein catabolic process 0.51% (1/195) 7.66 0.004937 0.021382
GO:1990112 RQC complex 0.51% (1/195) 7.66 0.004937 0.021382
GO:0004141 dethiobiotin synthase activity 0.51% (1/195) 7.66 0.004937 0.021382
GO:0140030 modification-dependent protein binding 0.51% (1/195) 7.66 0.004937 0.021382
GO:0070577 lysine-acetylated histone binding 0.51% (1/195) 7.66 0.004937 0.021382
GO:0016504 peptidase activator activity 0.51% (1/195) 7.66 0.004937 0.021382
GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity 0.51% (1/195) 7.66 0.004937 0.021382
GO:0071596 ubiquitin-dependent protein catabolic process via the N-end rule pathway 0.51% (1/195) 7.66 0.004937 0.021382
GO:0140033 acetylation-dependent protein binding 0.51% (1/195) 7.66 0.004937 0.021382
GO:0140492 metal-dependent deubiquitinase activity 1.03% (2/195) 4.27 0.004787 0.022106
GO:0070122 obsolete isopeptidase activity 1.03% (2/195) 4.27 0.004787 0.022106
GO:0030015 CCR4-NOT core complex 1.03% (2/195) 4.27 0.004787 0.022106
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 1.54% (3/195) 3.06 0.005719 0.024266
GO:0006913 nucleocytoplasmic transport 1.54% (3/195) 3.06 0.005719 0.024266
GO:0140096 catalytic activity, acting on a protein 13.33% (26/195) 0.76 0.00567 0.024388
GO:0017111 ribonucleoside triphosphate phosphatase activity 4.62% (9/195) 1.45 0.006067 0.025571
GO:0051169 nuclear transport 1.54% (3/195) 3.02 0.006164 0.025808
GO:0070603 SWI/SNF superfamily-type complex 1.03% (2/195) 4.08 0.006231 0.025914
GO:0061630 ubiquitin protein ligase activity 2.05% (4/195) 2.45 0.006363 0.026291
GO:0061659 ubiquitin-like protein ligase activity 2.05% (4/195) 2.44 0.006514 0.026738
GO:0005319 lipid transporter activity 1.03% (2/195) 4.02 0.006751 0.027352
GO:1904949 ATPase complex 1.03% (2/195) 4.02 0.006751 0.027352
GO:0003712 transcription coregulator activity 1.54% (3/195) 2.96 0.00687 0.027658
GO:0050789 regulation of biological process 11.79% (23/195) 0.79 0.007612 0.030449
GO:0043687 post-translational protein modification 3.08% (6/195) 1.8 0.007899 0.031396
GO:0034249 negative regulation of amide metabolic process 1.03% (2/195) 3.85 0.008424 0.032656
GO:0017148 negative regulation of translation 1.03% (2/195) 3.85 0.008424 0.032656
GO:0034062 5'-3' RNA polymerase activity 1.54% (3/195) 2.85 0.008422 0.033056
GO:0097747 RNA polymerase activity 1.54% (3/195) 2.85 0.008422 0.033056
GO:0097159 organic cyclic compound binding 26.15% (51/195) 0.46 0.008814 0.033749
GO:0016772 transferase activity, transferring phosphorus-containing groups 9.74% (19/195) 0.86 0.008811 0.033946
GO:0140104 molecular carrier activity 1.03% (2/195) 3.8 0.009019 0.034327
GO:0006396 RNA processing 3.59% (7/195) 1.59 0.00934 0.035336
GO:0006139 nucleobase-containing compound metabolic process 9.74% (19/195) 0.85 0.009903 0.035337
GO:1902115 regulation of organelle assembly 0.51% (1/195) 6.66 0.00985 0.035346
GO:0070628 proteasome binding 0.51% (1/195) 6.66 0.00985 0.035346
GO:0048017 obsolete inositol lipid-mediated signaling 0.51% (1/195) 6.66 0.00985 0.035346
GO:0090169 regulation of spindle assembly 0.51% (1/195) 6.66 0.00985 0.035346
GO:0046473 phosphatidic acid metabolic process 0.51% (1/195) 6.66 0.00985 0.035346
GO:0006654 phosphatidic acid biosynthetic process 0.51% (1/195) 6.66 0.00985 0.035346
GO:0030906 retromer, cargo-selective complex 0.51% (1/195) 6.66 0.00985 0.035346
GO:1901673 regulation of mitotic spindle assembly 0.51% (1/195) 6.66 0.00985 0.035346
GO:0065007 biological regulation 11.79% (23/195) 0.75 0.010249 0.036362
GO:0016462 pyrophosphatase activity 4.62% (9/195) 1.34 0.009747 0.036654
GO:0003777 microtubule motor activity 1.54% (3/195) 2.72 0.010786 0.037842
GO:0007018 microtubule-based movement 1.54% (3/195) 2.72 0.010786 0.037842
GO:0016740 transferase activity 16.41% (32/195) 0.6 0.011089 0.038687
GO:0044255 cellular lipid metabolic process 3.59% (7/195) 1.54 0.011185 0.038809
GO:0046483 heterocycle metabolic process 10.26% (20/195) 0.8 0.011453 0.039518
GO:0070647 protein modification by small protein conjugation or removal 2.56% (5/195) 1.9 0.011565 0.039688
GO:0031123 RNA 3'-end processing 1.03% (2/195) 3.57 0.012263 0.041853
GO:0004842 ubiquitin-protein transferase activity 2.56% (5/195) 1.86 0.01279 0.043417
GO:0015748 organophosphate ester transport 1.03% (2/195) 3.53 0.012964 0.043771
GO:0044238 primary metabolic process 25.64% (50/195) 0.43 0.013746 0.046164
GO:0008017 microtubule binding 2.05% (4/195) 2.12 0.013867 0.046321
GO:0008094 ATP-dependent activity, acting on DNA 3.08% (6/195) 1.61 0.014396 0.047581
GO:0019787 ubiquitin-like protein transferase activity 2.56% (5/195) 1.81 0.01449 0.047644
GO:0004721 phosphoprotein phosphatase activity 1.54% (3/195) 2.56 0.014605 0.047769
GO:0036211 protein modification process 9.74% (19/195) 0.79 0.014395 0.047832
GO:0051377 mannose-ethanolamine phosphotransferase activity 0.51% (1/195) 6.08 0.014738 0.047957
GO:0050794 regulation of cellular process 10.77% (21/195) 0.74 0.014835 0.048024
GO:0016755 aminoacyltransferase activity 2.56% (5/195) 1.79 0.015293 0.04925
GO:1901360 organic cyclic compound metabolic process 10.26% (20/195) 0.76 0.015373 0.049258
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (195) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms