Coexpression cluster: Cluster_90 (Zea mays HCCA coexpression clusters - Leiboff and Hake (2019))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0034641 cellular nitrogen compound metabolic process 19.72% (42/213) 1.44 0.0 2e-06
GO:0003676 nucleic acid binding 21.6% (46/213) 1.25 0.0 9e-06
GO:0044238 primary metabolic process 34.74% (74/213) 0.87 0.0 1.1e-05
GO:0071704 organic substance metabolic process 36.15% (77/213) 0.83 0.0 1.4e-05
GO:0046483 heterocycle metabolic process 15.96% (34/213) 1.44 0.0 1.6e-05
GO:0008152 metabolic process 37.56% (80/213) 0.79 0.0 1.6e-05
GO:0044237 cellular metabolic process 29.11% (62/213) 0.94 0.0 1.7e-05
GO:1901360 organic cyclic compound metabolic process 15.96% (34/213) 1.4 0.0 2.3e-05
GO:0034660 ncRNA metabolic process 5.16% (11/213) 2.88 0.0 3.3e-05
GO:0006725 cellular aromatic compound metabolic process 15.49% (33/213) 1.38 0.0 3.7e-05
GO:0006139 nucleobase-containing compound metabolic process 14.55% (31/213) 1.43 1e-06 4e-05
GO:0003674 molecular_function 68.54% (146/213) 0.39 1e-06 5.7e-05
GO:0006807 nitrogen compound metabolic process 29.11% (62/213) 0.86 1e-06 5.8e-05
GO:0009987 cellular process 38.5% (82/213) 0.7 1e-06 5.8e-05
GO:0044281 small molecule metabolic process 9.86% (21/213) 1.77 1e-06 5.9e-05
GO:0003723 RNA binding 8.92% (19/213) 1.79 3e-06 0.000161
GO:0097159 organic cyclic compound binding 31.92% (68/213) 0.75 5e-06 0.000215
GO:0005737 cytoplasm 4.23% (9/213) 2.8 7e-06 0.000295
GO:1901566 organonitrogen compound biosynthetic process 8.92% (19/213) 1.7 8e-06 0.000321
GO:0005488 binding 45.07% (96/213) 0.51 2.7e-05 0.001066
GO:0090407 organophosphate biosynthetic process 4.23% (9/213) 2.51 3.5e-05 0.00114
GO:1901576 organic substance biosynthetic process 12.21% (26/213) 1.26 3.4e-05 0.001168
GO:0006399 tRNA metabolic process 3.29% (7/213) 2.98 3.4e-05 0.001219
GO:0009058 biosynthetic process 12.68% (27/213) 1.24 3.4e-05 0.001268
GO:0016874 ligase activity 3.76% (8/213) 2.62 5.5e-05 0.00175
GO:0034470 ncRNA processing 3.29% (7/213) 2.84 6.1e-05 0.001787
GO:0008150 biological_process 50.23% (107/213) 0.44 5.9e-05 0.001793
GO:0090304 nucleic acid metabolic process 10.8% (23/213) 1.3 6.7e-05 0.001823
GO:0044249 cellular biosynthetic process 11.27% (24/213) 1.27 6.6e-05 0.001857
GO:0044271 cellular nitrogen compound biosynthetic process 8.45% (18/213) 1.46 0.000115 0.002928
GO:0006099 tricarboxylic acid cycle 1.88% (4/213) 4.01 0.000112 0.002958
GO:0006432 phenylalanyl-tRNA aminoacylation 0.94% (2/213) 6.53 0.000172 0.004128
GO:0004826 phenylalanine-tRNA ligase activity 0.94% (2/213) 6.53 0.000172 0.004128
GO:0072528 pyrimidine-containing compound biosynthetic process 1.88% (4/213) 3.78 0.00021 0.004891
GO:0003824 catalytic activity 38.5% (82/213) 0.5 0.000246 0.005548
GO:0072527 pyrimidine-containing compound metabolic process 1.88% (4/213) 3.7 0.00026 0.005697
GO:0043170 macromolecule metabolic process 23.0% (49/213) 0.7 0.000333 0.00711
GO:0006007 glucose catabolic process 0.94% (2/213) 5.73 0.000597 0.010255
GO:0006621 protein retention in ER lumen 0.94% (2/213) 5.73 0.000597 0.010255
GO:0032507 maintenance of protein location in cell 0.94% (2/213) 5.73 0.000597 0.010255
GO:0072595 maintenance of protein localization in organelle 0.94% (2/213) 5.73 0.000597 0.010255
GO:0035437 maintenance of protein localization in endoplasmic reticulum 0.94% (2/213) 5.73 0.000597 0.010255
GO:0045185 maintenance of protein location 0.94% (2/213) 5.73 0.000597 0.010255
GO:0046923 ER retention sequence binding 0.94% (2/213) 5.73 0.000597 0.010255
GO:0051651 maintenance of location in cell 0.94% (2/213) 5.73 0.000597 0.010255
GO:1901564 organonitrogen compound metabolic process 19.72% (42/213) 0.73 0.000622 0.010455
GO:0140101 catalytic activity, acting on a tRNA 2.35% (5/213) 2.87 0.000649 0.010683
GO:0140098 catalytic activity, acting on RNA 4.23% (9/213) 1.98 0.000524 0.010901
GO:0046365 monosaccharide catabolic process 0.94% (2/213) 5.53 0.000793 0.012289
GO:0019320 hexose catabolic process 0.94% (2/213) 5.53 0.000793 0.012289
GO:0008964 phosphoenolpyruvate carboxylase activity 0.94% (2/213) 5.53 0.000793 0.012289
GO:0110165 cellular anatomical entity 15.49% (33/213) 0.83 0.000855 0.012988
GO:0051235 maintenance of location 0.94% (2/213) 5.36 0.001016 0.015149
GO:0055086 nucleobase-containing small molecule metabolic process 3.76% (8/213) 1.98 0.001046 0.015302
GO:0042364 water-soluble vitamin biosynthetic process 1.41% (3/213) 3.83 0.001225 0.01759
GO:1901293 nucleoside phosphate biosynthetic process 2.35% (5/213) 2.58 0.00158 0.017829
GO:0009165 nucleotide biosynthetic process 2.35% (5/213) 2.58 0.00158 0.017829
GO:1901991 negative regulation of mitotic cell cycle phase transition 0.94% (2/213) 5.21 0.001266 0.017859
GO:0007093 mitotic cell cycle checkpoint signaling 0.94% (2/213) 5.08 0.001542 0.017912
GO:0045930 negative regulation of mitotic cell cycle 0.94% (2/213) 5.08 0.001542 0.017912
GO:0016763 pentosyltransferase activity 1.41% (3/213) 3.8 0.001319 0.017961
GO:0019637 organophosphate metabolic process 4.69% (10/213) 1.67 0.00135 0.018077
GO:0006767 water-soluble vitamin metabolic process 1.41% (3/213) 3.69 0.001628 0.018111
GO:0016070 RNA metabolic process 6.57% (14/213) 1.36 0.001308 0.018125
GO:0004812 aminoacyl-tRNA ligase activity 1.88% (4/213) 3.03 0.001523 0.018232
GO:0043039 tRNA aminoacylation 1.88% (4/213) 3.03 0.001523 0.018232
GO:0016875 ligase activity, forming carbon-oxygen bonds 1.88% (4/213) 3.03 0.001523 0.018232
GO:0043038 amino acid activation 1.88% (4/213) 3.03 0.001523 0.018232
GO:0009110 vitamin biosynthetic process 1.41% (3/213) 3.76 0.001417 0.018354
GO:0006418 tRNA aminoacylation for protein translation 1.88% (4/213) 3.06 0.001403 0.018475
GO:0010564 regulation of cell cycle process 1.41% (3/213) 3.73 0.00152 0.01937
GO:0006766 vitamin metabolic process 1.41% (3/213) 3.63 0.001857 0.020374
GO:0005575 cellular_component 19.25% (41/213) 0.66 0.001918 0.020754
GO:0018130 heterocycle biosynthetic process 4.69% (10/213) 1.58 0.002116 0.022589
GO:0015977 carbon fixation 0.94% (2/213) 4.83 0.002171 0.022868
GO:0006364 rRNA processing 1.88% (4/213) 2.85 0.002396 0.024911
GO:0004619 phosphoglycerate mutase activity 0.94% (2/213) 4.73 0.002524 0.025562
GO:0006400 tRNA modification 1.41% (3/213) 3.48 0.002515 0.025799
GO:0000075 cell cycle checkpoint signaling 0.94% (2/213) 4.63 0.002902 0.027957
GO:0010948 negative regulation of cell cycle process 0.94% (2/213) 4.63 0.002902 0.027957
GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors 0.94% (2/213) 4.63 0.002902 0.027957
GO:1901988 negative regulation of cell cycle phase transition 0.94% (2/213) 4.63 0.002902 0.027957
GO:0016072 rRNA metabolic process 1.88% (4/213) 2.77 0.002941 0.027992
GO:0003684 damaged DNA binding 0.94% (2/213) 4.45 0.003732 0.034686
GO:0005524 ATP binding 12.21% (26/213) 0.81 0.003714 0.034933
GO:1901362 organic cyclic compound biosynthetic process 4.69% (10/213) 1.45 0.003947 0.036253
GO:0016830 carbon-carbon lyase activity 1.88% (4/213) 2.63 0.004148 0.037666
GO:0035639 purine ribonucleoside triphosphate binding 13.15% (28/213) 0.76 0.004252 0.038172
GO:0006396 RNA processing 3.76% (8/213) 1.65 0.00431 0.038259
GO:0042277 peptide binding 0.94% (2/213) 4.29 0.004659 0.039579
GO:0005048 signal sequence binding 0.94% (2/213) 4.29 0.004659 0.039579
GO:0004611 phosphoenolpyruvate carboxykinase activity 0.94% (2/213) 4.29 0.004659 0.039579
GO:0000049 tRNA binding 0.94% (2/213) 4.29 0.004659 0.039579
GO:0003721 telomerase RNA reverse transcriptase activity 0.47% (1/213) 7.53 0.005393 0.040191
GO:0003964 RNA-directed DNA polymerase activity 0.47% (1/213) 7.53 0.005393 0.040191
GO:0007095 mitotic G2 DNA damage checkpoint signaling 0.47% (1/213) 7.53 0.005393 0.040191
GO:0044773 mitotic DNA damage checkpoint signaling 0.47% (1/213) 7.53 0.005393 0.040191
GO:0080008 Cul4-RING E3 ubiquitin ligase complex 0.47% (1/213) 7.53 0.005393 0.040191
GO:0071951 conversion of methionyl-tRNA to N-formyl-methionyl-tRNA 0.47% (1/213) 7.53 0.005393 0.040191
GO:0004639 phosphoribosylaminoimidazolesuccinocarboxamide synthase activity 0.47% (1/213) 7.53 0.005393 0.040191
GO:0006285 base-excision repair, AP site formation 0.47% (1/213) 7.53 0.005393 0.040191
GO:0004479 methionyl-tRNA formyltransferase activity 0.47% (1/213) 7.53 0.005393 0.040191
GO:0007346 regulation of mitotic cell cycle 0.94% (2/213) 4.14 0.005682 0.041948
GO:0016779 nucleotidyltransferase activity 2.35% (5/213) 2.14 0.005789 0.042345
GO:0022402 cell cycle process 1.88% (4/213) 2.53 0.005211 0.04288
GO:0003677 DNA binding 9.39% (20/213) 0.91 0.005292 0.043103
GO:0097367 carbohydrate derivative binding 13.62% (29/213) 0.72 0.005205 0.043287
GO:1901990 regulation of mitotic cell cycle phase transition 0.94% (2/213) 4.21 0.005159 0.043355
GO:0051726 regulation of cell cycle 1.41% (3/213) 3.03 0.00599 0.043411
GO:0019438 aromatic compound biosynthetic process 4.23% (9/213) 1.44 0.006363 0.045701
GO:0045786 negative regulation of cell cycle 0.94% (2/213) 4.01 0.006797 0.047941
GO:0016868 intramolecular phosphotransferase activity 0.94% (2/213) 4.01 0.006797 0.047941
GO:0032559 adenyl ribonucleotide binding 12.21% (26/213) 0.74 0.006899 0.048235
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (213) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms