Coexpression cluster: Cluster_24 (Zea mays HCCA coexpression clusters - Leiboff and Hake (2019))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005488 binding 60.0% (150/250) 0.92 0.0 0.0
GO:0005515 protein binding 30.4% (76/250) 1.43 0.0 0.0
GO:0032559 adenyl ribonucleotide binding 19.6% (49/250) 1.43 0.0 0.0
GO:0003674 molecular_function 70.8% (177/250) 0.44 0.0 0.0
GO:0032555 purine ribonucleotide binding 20.4% (51/250) 1.33 0.0 0.0
GO:0030554 adenyl nucleotide binding 19.6% (49/250) 1.34 0.0 0.0
GO:0032553 ribonucleotide binding 20.4% (51/250) 1.32 0.0 0.0
GO:0097367 carbohydrate derivative binding 20.4% (51/250) 1.31 0.0 0.0
GO:0017076 purine nucleotide binding 20.4% (51/250) 1.26 0.0 0.0
GO:1901265 nucleoside phosphate binding 20.8% (52/250) 1.21 0.0 1e-06
GO:0000166 nucleotide binding 20.8% (52/250) 1.21 0.0 1e-06
GO:0097159 organic cyclic compound binding 34.0% (85/250) 0.84 0.0 1e-06
GO:0005524 ATP binding 17.2% (43/250) 1.31 0.0 2e-06
GO:0043168 anion binding 20.4% (51/250) 1.17 0.0 2e-06
GO:1901363 heterocyclic compound binding 20.8% (52/250) 1.15 0.0 2e-06
GO:0036094 small molecule binding 20.8% (52/250) 1.13 0.0 2e-06
GO:0043167 ion binding 26.4% (66/250) 0.94 0.0 4e-06
GO:0035639 purine ribonucleoside triphosphate binding 18.0% (45/250) 1.22 0.0 4e-06
GO:0016570 histone modification 2.8% (7/250) 3.84 1e-06 2.3e-05
GO:0018205 peptidyl-lysine modification 2.4% (6/250) 4.27 1e-06 2.4e-05
GO:0003714 transcription corepressor activity 2.0% (5/250) 4.82 1e-06 2.8e-05
GO:0016071 mRNA metabolic process 4.0% (10/250) 2.91 1e-06 3.4e-05
GO:0018193 peptidyl-amino acid modification 3.2% (8/250) 3.32 2e-06 4.9e-05
GO:0006397 mRNA processing 3.6% (9/250) 3.05 2e-06 4.9e-05
GO:0140657 ATP-dependent activity 7.6% (19/250) 1.76 4e-06 0.000121
GO:0008278 cohesin complex 1.2% (3/250) 6.08 9e-06 0.000232
GO:0008150 biological_process 50.4% (126/250) 0.44 1.1e-05 0.000295
GO:0034968 histone lysine methylation 1.6% (4/250) 4.78 1.3e-05 0.000305
GO:0016571 histone methylation 1.6% (4/250) 4.78 1.3e-05 0.000305
GO:0140658 ATP-dependent chromatin remodeler activity 2.0% (5/250) 4.04 1.3e-05 0.000312
GO:0043687 post-translational protein modification 4.4% (11/250) 2.32 1.6e-05 0.000353
GO:0018022 peptidyl-lysine methylation 1.6% (4/250) 4.55 2.5e-05 0.00052
GO:0007062 sister chromatid cohesion 1.6% (4/250) 4.55 2.5e-05 0.00052
GO:0043401 steroid hormone mediated signaling pathway 1.6% (4/250) 4.5 2.8e-05 0.000569
GO:0009742 brassinosteroid mediated signaling pathway 1.6% (4/250) 4.5 2.8e-05 0.000569
GO:0031324 negative regulation of cellular metabolic process 3.2% (8/250) 2.72 3.3e-05 0.00065
GO:0008092 cytoskeletal protein binding 4.0% (10/250) 2.31 4.1e-05 0.000697
GO:0140938 histone H3 methyltransferase activity 0.8% (2/250) 7.3 4e-05 0.000698
GO:0042054 histone methyltransferase activity 0.8% (2/250) 7.3 4e-05 0.000698
GO:0010605 negative regulation of macromolecule metabolic process 3.2% (8/250) 2.69 3.9e-05 0.000713
GO:0009892 negative regulation of metabolic process 3.2% (8/250) 2.69 3.9e-05 0.000713
GO:0051253 negative regulation of RNA metabolic process 2.0% (5/250) 3.54 7.3e-05 0.001225
GO:0045934 negative regulation of nucleobase-containing compound metabolic process 2.0% (5/250) 3.5 8.4e-05 0.001375
GO:0030120 vesicle coat 1.6% (4/250) 4.09 8.8e-05 0.001397
GO:0016885 ligase activity, forming carbon-carbon bonds 0.8% (2/250) 6.72 0.000119 0.001738
GO:0016421 CoA carboxylase activity 0.8% (2/250) 6.72 0.000119 0.001738
GO:0000245 spliceosomal complex assembly 0.8% (2/250) 6.72 0.000119 0.001738
GO:0003989 acetyl-CoA carboxylase activity 0.8% (2/250) 6.72 0.000119 0.001738
GO:0048523 negative regulation of cellular process 3.2% (8/250) 2.44 0.000129 0.001849
GO:0003712 transcription coregulator activity 2.0% (5/250) 3.34 0.000141 0.001979
GO:0003676 nucleic acid binding 16.4% (41/250) 0.86 0.000149 0.002045
GO:0043531 ADP binding 2.4% (6/250) 2.9 0.000165 0.002224
GO:0030117 membrane coat 2.0% (5/250) 3.29 0.000169 0.002232
GO:0031441 negative regulation of mRNA 3'-end processing 0.8% (2/250) 6.3 0.000237 0.002444
GO:0061013 regulation of mRNA catabolic process 0.8% (2/250) 6.3 0.000237 0.002444
GO:0050686 negative regulation of mRNA processing 0.8% (2/250) 6.3 0.000237 0.002444
GO:0043488 regulation of mRNA stability 0.8% (2/250) 6.3 0.000237 0.002444
GO:0070717 poly-purine tract binding 0.8% (2/250) 6.3 0.000237 0.002444
GO:0043487 regulation of RNA stability 0.8% (2/250) 6.3 0.000237 0.002444
GO:1900364 negative regulation of mRNA polyadenylation 0.8% (2/250) 6.3 0.000237 0.002444
GO:1903312 negative regulation of mRNA metabolic process 0.8% (2/250) 6.3 0.000237 0.002444
GO:0031440 regulation of mRNA 3'-end processing 0.8% (2/250) 6.3 0.000237 0.002444
GO:0008143 poly(A) binding 0.8% (2/250) 6.3 0.000237 0.002444
GO:0003727 single-stranded RNA binding 0.8% (2/250) 6.3 0.000237 0.002444
GO:0032051 clathrin light chain binding 0.8% (2/250) 6.3 0.000237 0.002444
GO:0071439 clathrin complex 0.8% (2/250) 6.3 0.000237 0.002444
GO:0140993 histone modifying activity 1.6% (4/250) 3.81 0.00019 0.002468
GO:0048519 negative regulation of biological process 3.2% (8/250) 2.35 0.000198 0.002521
GO:0008213 protein alkylation 1.6% (4/250) 3.69 0.000265 0.002654
GO:0006479 protein methylation 1.6% (4/250) 3.69 0.000265 0.002654
GO:0016459 myosin complex 1.2% (3/250) 4.43 0.000353 0.00348
GO:0050794 regulation of cellular process 12.4% (31/250) 0.94 0.000379 0.003682
GO:0009987 cellular process 33.2% (83/250) 0.49 0.000393 0.003765
GO:0016043 cellular component organization 7.2% (18/250) 1.29 0.000488 0.004612
GO:0004674 protein serine/threonine kinase activity 2.4% (6/250) 2.59 0.000516 0.004751
GO:0071840 cellular component organization or biogenesis 7.6% (19/250) 1.24 0.000515 0.004807
GO:0050684 regulation of mRNA processing 0.8% (2/250) 5.72 0.000589 0.005215
GO:0031329 regulation of cellular catabolic process 0.8% (2/250) 5.72 0.000589 0.005215
GO:1903311 regulation of mRNA metabolic process 0.8% (2/250) 5.72 0.000589 0.005215
GO:0009755 hormone-mediated signaling pathway 2.4% (6/250) 2.52 0.00067 0.00586
GO:0090304 nucleic acid metabolic process 9.2% (23/250) 1.07 0.000692 0.005981
GO:0065007 biological regulation 12.8% (32/250) 0.87 0.000752 0.006416
GO:0048507 meristem development 0.8% (2/250) 5.5 0.000821 0.006527
GO:0003724 RNA helicase activity 1.6% (4/250) 3.28 0.000784 0.00653
GO:0008186 ATP-dependent activity, acting on RNA 1.6% (4/250) 3.28 0.000784 0.00653
GO:0003774 cytoskeletal motor activity 2.0% (5/250) 2.79 0.000818 0.006579
GO:0051172 negative regulation of nitrogen compound metabolic process 2.0% (5/250) 2.79 0.000818 0.006579
GO:0016070 RNA metabolic process 6.4% (16/250) 1.32 0.000815 0.00671
GO:0031327 negative regulation of cellular biosynthetic process 2.4% (6/250) 2.45 0.000883 0.006718
GO:0010558 negative regulation of macromolecule biosynthetic process 2.4% (6/250) 2.45 0.000883 0.006718
GO:0009890 negative regulation of biosynthetic process 2.4% (6/250) 2.45 0.000883 0.006718
GO:0018024 obsolete histone lysine N-methyltransferase activity 1.2% (3/250) 3.98 0.000896 0.006747
GO:0006952 defense response 3.2% (8/250) 2.01 0.000921 0.006856
GO:0003723 RNA binding 6.4% (16/250) 1.31 0.000875 0.006886
GO:0050789 regulation of biological process 12.4% (31/250) 0.86 0.000996 0.007186
GO:0016887 ATP hydrolysis activity 3.6% (9/250) 1.85 0.000989 0.007214
GO:0045184 establishment of protein localization 3.6% (9/250) 1.85 0.000989 0.007214
GO:0006996 organelle organization 4.8% (12/250) 1.53 0.001092 0.00728
GO:0140640 catalytic activity, acting on a nucleic acid 6.0% (15/250) 1.34 0.001022 0.007303
GO:0010073 meristem maintenance 0.8% (2/250) 5.3 0.00109 0.007333
GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity 0.8% (2/250) 5.3 0.00109 0.007333
GO:0030132 clathrin coat of coated pit 0.8% (2/250) 5.3 0.00109 0.007333
GO:0030118 clathrin coat 0.8% (2/250) 5.3 0.00109 0.007333
GO:0030130 clathrin coat of trans-Golgi network vesicle 0.8% (2/250) 5.3 0.00109 0.007333
GO:0030125 clathrin vesicle coat 0.8% (2/250) 5.3 0.00109 0.007333
GO:0008104 protein localization 3.6% (9/250) 1.82 0.001177 0.007629
GO:0070727 cellular macromolecule localization 3.6% (9/250) 1.82 0.001177 0.007629
GO:0033036 macromolecule localization 3.6% (9/250) 1.82 0.001177 0.007629
GO:0022402 cell cycle process 2.0% (5/250) 2.63 0.001372 0.008812
GO:0009738 abscisic acid-activated signaling pathway 0.8% (2/250) 5.13 0.001395 0.008877
GO:0045292 mRNA cis splicing, via spliceosome 0.8% (2/250) 4.98 0.001736 0.010951
GO:0015631 tubulin binding 2.4% (6/250) 2.23 0.001891 0.011817
GO:0008270 zinc ion binding 4.4% (11/250) 1.5 0.001977 0.012247
GO:0016462 pyrophosphatase activity 4.8% (12/250) 1.4 0.002256 0.013853
GO:0005986 sucrose biosynthetic process 0.8% (2/250) 4.72 0.002526 0.014982
GO:0090576 RNA polymerase III transcription regulator complex 0.8% (2/250) 4.72 0.002526 0.014982
GO:0000127 transcription factor TFIIIC complex 0.8% (2/250) 4.72 0.002526 0.014982
GO:0043414 macromolecule methylation 1.6% (4/250) 2.83 0.002511 0.015284
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 4.8% (12/250) 1.37 0.00261 0.01535
GO:0032991 protein-containing complex 8.4% (21/250) 0.97 0.002634 0.015365
GO:0016817 hydrolase activity, acting on acid anhydrides 4.8% (12/250) 1.36 0.002818 0.016301
GO:0051641 cellular localization 4.0% (10/250) 1.5 0.003116 0.01788
GO:0006396 RNA processing 3.6% (9/250) 1.59 0.00335 0.019064
GO:0140326 ATPase-coupled intramembrane lipid transporter activity 0.8% (2/250) 4.5 0.003453 0.019495
GO:0017111 ribonucleoside triphosphate phosphatase activity 4.4% (11/250) 1.39 0.00367 0.020551
GO:0030126 COPI vesicle coat 0.8% (2/250) 4.4 0.003968 0.021367
GO:0016278 lysine N-methyltransferase activity 0.8% (2/250) 4.4 0.003968 0.021367
GO:0006384 transcription initiation at RNA polymerase III promoter 0.8% (2/250) 4.4 0.003968 0.021367
GO:0016279 protein-lysine N-methyltransferase activity 0.8% (2/250) 4.4 0.003968 0.021367
GO:0007165 signal transduction 3.6% (9/250) 1.55 0.003944 0.02191
GO:0004721 phosphoprotein phosphatase activity 1.6% (4/250) 2.62 0.004245 0.022512
GO:0071702 organic substance transport 4.0% (10/250) 1.44 0.004236 0.022634
GO:0032784 regulation of DNA-templated transcription elongation 0.8% (2/250) 4.3 0.004516 0.022908
GO:0006475 internal protein amino acid acetylation 0.8% (2/250) 4.3 0.004516 0.022908
GO:0016573 histone acetylation 0.8% (2/250) 4.3 0.004516 0.022908
GO:0018393 internal peptidyl-lysine acetylation 0.8% (2/250) 4.3 0.004516 0.022908
GO:0018394 peptidyl-lysine acetylation 0.8% (2/250) 4.3 0.004516 0.022908
GO:0005694 chromosome 0.8% (2/250) 4.3 0.004516 0.022908
GO:0003779 actin binding 1.6% (4/250) 2.56 0.004859 0.024469
GO:0006139 nucleobase-containing compound metabolic process 9.6% (24/250) 0.83 0.004959 0.024797
GO:0140303 intramembrane lipid transporter activity 0.8% (2/250) 4.22 0.005097 0.025304
GO:0006886 intracellular protein transport 2.4% (6/250) 1.93 0.005172 0.025494
GO:0015914 phospholipid transport 0.8% (2/250) 4.13 0.00571 0.027952
GO:0006265 DNA topological change 0.8% (2/250) 4.06 0.006356 0.028889
GO:0043419 urea catabolic process 0.4% (1/250) 7.3 0.006329 0.028958
GO:0009039 urease activity 0.4% (1/250) 7.3 0.006329 0.028958
GO:0035550 urease complex 0.4% (1/250) 7.3 0.006329 0.028958
GO:0019627 urea metabolic process 0.4% (1/250) 7.3 0.006329 0.028958
GO:0004198 calcium-dependent cysteine-type endopeptidase activity 0.4% (1/250) 7.3 0.006329 0.028958
GO:0060147 regulation of post-transcriptional gene silencing 0.4% (1/250) 7.3 0.006329 0.028958
GO:0046975 histone H3K36 methyltransferase activity 0.4% (1/250) 7.3 0.006329 0.028958
GO:0005637 nuclear inner membrane 0.4% (1/250) 7.3 0.006329 0.028958
GO:0010452 histone H3-K36 methylation 0.4% (1/250) 7.3 0.006329 0.028958
GO:0042800 histone H3K4 methyltransferase activity 0.4% (1/250) 7.3 0.006329 0.028958
GO:0032259 methylation 1.6% (4/250) 2.45 0.006451 0.029136
GO:0008017 microtubule binding 2.0% (5/250) 2.09 0.006791 0.030472
GO:0004402 histone acetyltransferase activity 0.8% (2/250) 3.98 0.007032 0.030767
GO:0061733 peptide-lysine-N-acetyltransferase activity 0.8% (2/250) 3.98 0.007032 0.030767
GO:0003916 DNA topoisomerase activity 0.8% (2/250) 3.98 0.007032 0.030767
GO:0015031 protein transport 2.8% (7/250) 1.67 0.007012 0.031266
GO:0006473 protein acetylation 0.8% (2/250) 3.91 0.00774 0.033654
GO:0045892 negative regulation of DNA-templated transcription 1.2% (3/250) 2.89 0.007857 0.03374
GO:1902679 negative regulation of RNA biosynthetic process 1.2% (3/250) 2.89 0.007857 0.03374
GO:0046872 metal ion binding 8.8% (22/250) 0.8 0.008578 0.03639
GO:0003729 mRNA binding 1.2% (3/250) 2.84 0.00855 0.036493
GO:0009894 regulation of catabolic process 0.8% (2/250) 3.78 0.009248 0.038998
GO:0071705 nitrogen compound transport 3.2% (8/250) 1.43 0.010615 0.044495
GO:0019866 organelle inner membrane 0.8% (2/250) 3.66 0.010876 0.04452
GO:0034212 peptide N-acetyltransferase activity 0.8% (2/250) 3.66 0.010876 0.04452
GO:0005319 lipid transporter activity 0.8% (2/250) 3.66 0.010876 0.04452
GO:0043543 protein acylation 0.8% (2/250) 3.66 0.010876 0.04452
GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity 0.8% (2/250) 3.6 0.011733 0.047203
GO:0000226 microtubule cytoskeleton organization 1.2% (3/250) 2.68 0.011673 0.047234
GO:0140097 catalytic activity, acting on DNA 3.2% (8/250) 1.4 0.011657 0.047443
GO:0032386 regulation of intracellular transport 0.4% (1/250) 6.3 0.012619 0.047747
GO:0043605 amide catabolic process 0.4% (1/250) 6.3 0.012619 0.047747
GO:2000641 regulation of early endosome to late endosome transport 0.4% (1/250) 6.3 0.012619 0.047747
GO:0071941 nitrogen cycle metabolic process 0.4% (1/250) 6.3 0.012619 0.047747
GO:0016442 RISC complex 0.4% (1/250) 6.3 0.012619 0.047747
GO:0031332 RNAi effector complex 0.4% (1/250) 6.3 0.012619 0.047747
GO:0016035 zeta DNA polymerase complex 0.4% (1/250) 6.3 0.012619 0.047747
GO:0060341 regulation of cellular localization 0.4% (1/250) 6.3 0.012619 0.047747
GO:0005575 cellular_component 17.2% (43/250) 0.5 0.01204 0.047888
GO:0007017 microtubule-based process 2.0% (5/250) 1.88 0.011975 0.0479
GO:0043169 cation binding 8.8% (22/250) 0.74 0.013005 0.048943
GO:0046483 heterocycle metabolic process 9.6% (24/250) 0.7 0.013121 0.049118
GO:0051276 chromosome organization 2.8% (7/250) 1.5 0.012577 0.049738
GO:0046907 intracellular transport 2.8% (7/250) 1.49 0.013404 0.04991
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (250) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms