Coexpression cluster: Cluster_108 (Zea mays HCCA coexpression clusters - Leiboff and Hake (2019))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0018279 protein N-linked glycosylation via asparagine 3.12% (2/64) 9.27 3e-06 0.000246
GO:0000166 nucleotide binding 29.69% (19/64) 1.72 2e-06 0.000265
GO:1901265 nucleoside phosphate binding 29.69% (19/64) 1.72 2e-06 0.000265
GO:0036094 small molecule binding 29.69% (19/64) 1.65 5e-06 0.000287
GO:1901363 heterocyclic compound binding 29.69% (19/64) 1.66 4e-06 0.000301
GO:0017076 purine nucleotide binding 29.69% (19/64) 1.8 1e-06 0.000367
GO:0019001 guanyl nucleotide binding 9.38% (6/64) 3.52 1.4e-05 0.000455
GO:0005488 binding 57.81% (37/64) 0.87 1.4e-05 0.000477
GO:0003674 molecular_function 78.12% (50/64) 0.58 1.6e-05 0.000482
GO:0009987 cellular process 48.44% (31/64) 1.03 1.4e-05 0.000522
GO:0043168 anion binding 28.12% (18/64) 1.63 1e-05 0.000546
GO:0032561 guanyl ribonucleotide binding 9.38% (6/64) 3.54 1.3e-05 0.000565
GO:0005525 GTP binding 9.38% (6/64) 3.54 1.3e-05 0.000565
GO:0035639 purine ribonucleoside triphosphate binding 25.0% (16/64) 1.69 2.2e-05 0.000596
GO:0032555 purine ribonucleotide binding 25.0% (16/64) 1.63 3.7e-05 0.000947
GO:0032553 ribonucleotide binding 25.0% (16/64) 1.61 4.2e-05 0.000998
GO:0097367 carbohydrate derivative binding 25.0% (16/64) 1.6 4.6e-05 0.001035
GO:0097159 organic cyclic compound binding 40.62% (26/64) 1.09 5.2e-05 0.001107
GO:0006082 organic acid metabolic process 10.94% (7/64) 2.63 0.000134 0.00243
GO:0006487 protein N-linked glycosylation 3.12% (2/64) 6.81 0.000141 0.002432
GO:0043436 oxoacid metabolic process 10.94% (7/64) 2.63 0.000133 0.00253
GO:0019752 carboxylic acid metabolic process 10.94% (7/64) 2.64 0.000132 0.002639
GO:0071704 organic substance metabolic process 40.62% (26/64) 0.99 0.000174 0.002881
GO:0043167 ion binding 31.25% (20/64) 1.18 0.000261 0.004138
GO:0030554 adenyl nucleotide binding 21.88% (14/64) 1.5 0.000314 0.004777
GO:0043170 macromolecule metabolic process 31.25% (20/64) 1.14 0.000362 0.005293
GO:0044238 primary metabolic process 37.5% (24/64) 0.98 0.000423 0.005737
GO:0006520 amino acid metabolic process 7.81% (5/64) 3.0 0.000408 0.005739
GO:0008152 metabolic process 40.62% (26/64) 0.9 0.000505 0.006615
GO:0008150 biological_process 57.81% (37/64) 0.64 0.000595 0.007532
GO:0016874 ligase activity 6.25% (4/64) 3.35 0.000655 0.007774
GO:0006807 nitrogen compound metabolic process 32.81% (21/64) 1.04 0.000676 0.007786
GO:0003824 catalytic activity 46.88% (30/64) 0.78 0.000639 0.007837
GO:0044237 cellular metabolic process 31.25% (20/64) 1.04 0.000899 0.010047
GO:0033699 DNA 5'-adenosine monophosphate hydrolase activity 1.56% (1/64) 9.27 0.00162 0.01466
GO:0004329 formate-tetrahydrofolate ligase activity 1.56% (1/64) 9.27 0.00162 0.01466
GO:0003746 translation elongation factor activity 3.12% (2/64) 5.14 0.001486 0.014857
GO:0046394 carboxylic acid biosynthetic process 6.25% (4/64) 3.05 0.001414 0.014921
GO:0016053 organic acid biosynthetic process 6.25% (4/64) 3.05 0.001414 0.014921
GO:0031090 organelle membrane 4.69% (3/64) 3.76 0.001457 0.014964
GO:0005515 protein binding 25.0% (16/64) 1.15 0.001602 0.015221
GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor 3.12% (2/64) 5.1 0.001571 0.015311
GO:0005789 endoplasmic reticulum membrane 3.12% (2/64) 4.84 0.002236 0.01976
GO:0006399 tRNA metabolic process 4.69% (3/64) 3.49 0.002474 0.020893
GO:0044281 small molecule metabolic process 10.94% (7/64) 1.92 0.00242 0.020899
GO:0004160 dihydroxy-acid dehydratase activity 1.56% (1/64) 8.27 0.003238 0.024609
GO:0004830 tryptophan-tRNA ligase activity 1.56% (1/64) 8.27 0.003238 0.024609
GO:0006436 tryptophanyl-tRNA aminoacylation 1.56% (1/64) 8.27 0.003238 0.024609
GO:0015450 protein-transporting ATPase activity 1.56% (1/64) 8.27 0.003238 0.024609
GO:0006414 translational elongation 3.12% (2/64) 4.63 0.003011 0.024876
GO:0044283 small molecule biosynthetic process 6.25% (4/64) 2.69 0.003466 0.025822
GO:0005524 ATP binding 17.19% (11/64) 1.31 0.004325 0.031604
GO:0004617 phosphoglycerate dehydrogenase activity 1.56% (1/64) 7.68 0.004853 0.032355
GO:0015386 potassium:proton antiporter activity 1.56% (1/64) 7.68 0.004853 0.032355
GO:0035312 5'-3' DNA exonuclease activity 1.56% (1/64) 7.68 0.004853 0.032355
GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase 1.56% (1/64) 7.68 0.004853 0.032355
GO:0022821 solute:potassium antiporter activity 1.56% (1/64) 7.68 0.004853 0.032355
GO:0140098 catalytic activity, acting on RNA 6.25% (4/64) 2.54 0.004968 0.032548
GO:0043412 macromolecule modification 15.62% (10/64) 1.35 0.00522 0.033618
GO:0090304 nucleic acid metabolic process 12.5% (8/64) 1.51 0.006651 0.037167
GO:0016787 hydrolase activity 18.75% (12/64) 1.16 0.006554 0.037169
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors 3.12% (2/64) 4.06 0.006476 0.037285
GO:0006424 glutamyl-tRNA aminoacylation 1.56% (1/64) 7.27 0.006466 0.0378
GO:0070402 NADPH binding 1.56% (1/64) 7.27 0.006466 0.0378
GO:0004818 glutamate-tRNA ligase activity 1.56% (1/64) 7.27 0.006466 0.0378
GO:0004809 obsolete tRNA (guanine-N2-)-methyltransferase activity 1.56% (1/64) 7.27 0.006466 0.0378
GO:0016070 RNA metabolic process 9.38% (6/64) 1.87 0.00597 0.03781
GO:1901564 organonitrogen compound metabolic process 23.44% (15/64) 0.98 0.006891 0.037949
GO:0032559 adenyl ribonucleotide binding 17.19% (11/64) 1.24 0.0062 0.038622
GO:0006564 L-serine biosynthetic process 1.56% (1/64) 6.95 0.008076 0.04384
GO:0003924 GTPase activity 4.69% (3/64) 2.77 0.00978 0.044774
GO:0044249 cellular biosynthetic process 12.5% (8/64) 1.42 0.009693 0.044919
GO:0016255 attachment of GPI anchor to protein 1.56% (1/64) 6.68 0.009683 0.045428
GO:0016895 DNA exonuclease activity, producing 5'-phosphomonoesters 1.56% (1/64) 6.68 0.009683 0.045428
GO:0004529 DNA exonuclease activity 1.56% (1/64) 6.68 0.009683 0.045428
GO:0004318 enoyl-[acyl-carrier-protein] reductase (NADH) activity 1.56% (1/64) 6.68 0.009683 0.045428
GO:0016631 enoyl-[acyl-carrier-protein] reductase activity 1.56% (1/64) 6.68 0.009683 0.045428
GO:0034660 ncRNA metabolic process 4.69% (3/64) 2.74 0.010375 0.046935
GO:0043038 amino acid activation 3.12% (2/64) 3.76 0.009646 0.048232
GO:0043039 tRNA aminoacylation 3.12% (2/64) 3.76 0.009646 0.048232
GO:0004812 aminoacyl-tRNA ligase activity 3.12% (2/64) 3.76 0.009646 0.048232
GO:0016875 ligase activity, forming carbon-oxygen bonds 3.12% (2/64) 3.76 0.009646 0.048232
GO:0008409 5'-3' exonuclease activity 1.56% (1/64) 6.46 0.011288 0.049305
GO:0008303 caspase complex 1.56% (1/64) 6.46 0.011288 0.049305
GO:0042765 GPI-anchor transamidase complex 1.56% (1/64) 6.46 0.011288 0.049305
GO:0036211 protein modification process 14.06% (9/64) 1.32 0.009366 0.049433
GO:0006418 tRNA aminoacylation for protein translation 3.12% (2/64) 3.79 0.009244 0.049474
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (64) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms