Coexpression cluster: Cluster_239 (Zea mays HCCA coexpression clusters - Leiboff and Hake (2019))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016070 RNA metabolic process 18.71% (29/155) 2.87 0.0 0.0
GO:0090304 nucleic acid metabolic process 20.65% (32/155) 2.24 0.0 0.0
GO:0006396 RNA processing 11.61% (18/155) 3.28 0.0 0.0
GO:0005488 binding 59.35% (92/155) 0.91 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 21.29% (33/155) 1.97 0.0 0.0
GO:0046483 heterocycle metabolic process 21.29% (33/155) 1.85 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 21.29% (33/155) 1.84 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 21.29% (33/155) 1.81 0.0 0.0
GO:0003674 molecular_function 76.13% (118/155) 0.54 0.0 0.0
GO:0006397 mRNA processing 6.45% (10/155) 3.89 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 21.94% (34/155) 1.59 0.0 0.0
GO:0035639 purine ribonucleoside triphosphate binding 22.58% (35/155) 1.54 0.0 0.0
GO:0016071 mRNA metabolic process 6.45% (10/155) 3.6 0.0 1e-06
GO:0032555 purine ribonucleotide binding 22.58% (35/155) 1.48 0.0 1e-06
GO:0032553 ribonucleotide binding 22.58% (35/155) 1.47 0.0 1e-06
GO:0097367 carbohydrate derivative binding 22.58% (35/155) 1.45 0.0 1e-06
GO:0017076 purine nucleotide binding 22.58% (35/155) 1.4 0.0 3e-06
GO:0005515 protein binding 26.45% (41/155) 1.23 0.0 4e-06
GO:0034660 ncRNA metabolic process 6.45% (10/155) 3.2 0.0 5e-06
GO:0140640 catalytic activity, acting on a nucleic acid 10.97% (17/155) 2.21 0.0 5e-06
GO:1901265 nucleoside phosphate binding 22.58% (35/155) 1.33 0.0 7e-06
GO:0000166 nucleotide binding 22.58% (35/155) 1.33 0.0 7e-06
GO:0043168 anion binding 22.58% (35/155) 1.32 0.0 8e-06
GO:0009987 cellular process 41.94% (65/155) 0.82 0.0 9e-06
GO:0016874 ligase activity 5.81% (9/155) 3.24 1e-06 1.2e-05
GO:1901363 heterocyclic compound binding 22.58% (35/155) 1.27 1e-06 1.7e-05
GO:0005524 ATP binding 18.71% (29/155) 1.43 1e-06 1.9e-05
GO:0036094 small molecule binding 22.58% (35/155) 1.25 1e-06 1.9e-05
GO:0031267 small GTPase binding 2.58% (4/155) 5.53 2e-06 2.8e-05
GO:0051020 GTPase binding 2.58% (4/155) 5.53 2e-06 2.8e-05
GO:0043167 ion binding 28.39% (44/155) 1.04 2e-06 2.9e-05
GO:0000398 mRNA splicing, via spliceosome 3.87% (6/155) 3.99 2e-06 3.9e-05
GO:0032559 adenyl ribonucleotide binding 18.71% (29/155) 1.36 2e-06 4e-05
GO:0032991 protein-containing complex 13.55% (21/155) 1.66 3e-06 4.8e-05
GO:0043170 macromolecule metabolic process 28.39% (44/155) 1.01 3e-06 4.8e-05
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 3.87% (6/155) 3.86 4e-06 5.9e-05
GO:0000375 RNA splicing, via transesterification reactions 3.87% (6/155) 3.8 5e-06 7.5e-05
GO:0097159 organic cyclic compound binding 34.19% (53/155) 0.85 6e-06 8e-05
GO:0006807 nitrogen compound metabolic process 30.32% (47/155) 0.92 6e-06 8.2e-05
GO:0030554 adenyl nucleotide binding 18.71% (29/155) 1.28 7e-06 9.9e-05
GO:0140098 catalytic activity, acting on RNA 6.45% (10/155) 2.59 7e-06 0.0001
GO:0008380 RNA splicing 3.87% (6/155) 3.59 1.2e-05 0.00015
GO:0016570 histone modification 3.23% (5/155) 4.05 1.4e-05 0.00017
GO:0017111 ribonucleoside triphosphate phosphatase activity 7.74% (12/155) 2.2 1.4e-05 0.000173
GO:0002161 aminoacyl-tRNA editing activity 1.94% (3/155) 5.88 1.6e-05 0.000199
GO:0006457 protein folding 4.52% (7/155) 3.07 2.3e-05 0.00027
GO:0019899 enzyme binding 3.23% (5/155) 3.89 2.4e-05 0.000273
GO:0006418 tRNA aminoacylation for protein translation 3.23% (5/155) 3.84 2.8e-05 0.000315
GO:0004812 aminoacyl-tRNA ligase activity 3.23% (5/155) 3.81 3.1e-05 0.000318
GO:0043038 amino acid activation 3.23% (5/155) 3.81 3.1e-05 0.000318
GO:0016875 ligase activity, forming carbon-oxygen bonds 3.23% (5/155) 3.81 3.1e-05 0.000318
GO:0043039 tRNA aminoacylation 3.23% (5/155) 3.81 3.1e-05 0.000318
GO:0016462 pyrophosphatase activity 7.74% (12/155) 2.09 2.9e-05 0.000322
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 7.74% (12/155) 2.06 3.4e-05 0.000348
GO:0016817 hydrolase activity, acting on acid anhydrides 7.74% (12/155) 2.05 3.8e-05 0.000374
GO:0016574 histone ubiquitination 1.29% (2/155) 7.41 4.6e-05 0.000409
GO:0004823 leucine-tRNA ligase activity 1.29% (2/155) 7.41 4.6e-05 0.000409
GO:0006429 leucyl-tRNA aminoacylation 1.29% (2/155) 7.41 4.6e-05 0.000409
GO:0010390 histone monoubiquitination 1.29% (2/155) 7.41 4.6e-05 0.000409
GO:0006513 protein monoubiquitination 1.29% (2/155) 7.41 4.6e-05 0.000409
GO:0008150 biological_process 52.9% (82/155) 0.51 4.2e-05 0.000413
GO:0006399 tRNA metabolic process 3.87% (6/155) 3.21 5.1e-05 0.000446
GO:0008641 ubiquitin-like modifier activating enzyme activity 1.94% (3/155) 5.33 5.5e-05 0.000474
GO:0006886 intracellular protein transport 4.52% (7/155) 2.85 6e-05 0.000508
GO:0044237 cellular metabolic process 27.1% (42/155) 0.84 9e-05 0.000753
GO:0009894 regulation of catabolic process 1.94% (3/155) 5.05 9.9e-05 0.000818
GO:0140513 nuclear protein-containing complex 5.16% (8/155) 2.47 0.00011 0.000897
GO:0016593 Cdc73/Paf1 complex 1.29% (2/155) 6.67 0.000152 0.001199
GO:0140101 catalytic activity, acting on a tRNA 3.23% (5/155) 3.33 0.000151 0.001209
GO:0016877 ligase activity, forming carbon-sulfur bonds 1.94% (3/155) 4.77 0.000181 0.001407
GO:0140657 ATP-dependent activity 7.74% (12/155) 1.79 0.000205 0.001576
GO:0044238 primary metabolic process 30.97% (48/155) 0.7 0.000242 0.00183
GO:0008023 transcription elongation factor complex 1.29% (2/155) 5.99 0.000422 0.002986
GO:0006368 transcription elongation by RNA polymerase II 1.29% (2/155) 5.99 0.000422 0.002986
GO:0000502 proteasome complex 1.29% (2/155) 5.99 0.000422 0.002986
GO:0006354 DNA-templated transcription elongation 1.29% (2/155) 5.99 0.000422 0.002986
GO:0043414 macromolecule methylation 2.58% (4/155) 3.52 0.00043 0.003003
GO:0006352 DNA-templated transcription initiation 2.58% (4/155) 3.53 0.000412 0.003074
GO:0015031 protein transport 4.52% (7/155) 2.36 0.000474 0.003268
GO:0005681 spliceosomal complex 1.94% (3/155) 4.26 0.000526 0.003586
GO:0071704 organic substance metabolic process 31.61% (49/155) 0.63 0.000653 0.004393
GO:0034470 ncRNA processing 3.23% (5/155) 2.82 0.000767 0.005098
GO:0008152 metabolic process 32.9% (51/155) 0.6 0.000852 0.005595
GO:0005575 cellular_component 21.29% (33/155) 0.81 0.000905 0.005874
GO:0016072 rRNA metabolic process 2.58% (4/155) 3.23 0.000922 0.00591
GO:1902494 catalytic complex 5.16% (8/155) 2.0 0.000939 0.005948
GO:0045184 establishment of protein localization 4.52% (7/155) 2.18 0.00098 0.00607
GO:0016887 ATP hydrolysis activity 4.52% (7/155) 2.18 0.00098 0.00607
GO:0046907 intracellular transport 4.52% (7/155) 2.18 0.000994 0.00609
GO:0051649 establishment of localization in cell 4.52% (7/155) 2.17 0.001024 0.0062
GO:0031072 heat shock protein binding 1.94% (3/155) 3.91 0.001075 0.006438
GO:0070727 cellular macromolecule localization 4.52% (7/155) 2.14 0.001132 0.006565
GO:0033036 macromolecule localization 4.52% (7/155) 2.14 0.001132 0.006565
GO:0008104 protein localization 4.52% (7/155) 2.14 0.001132 0.006565
GO:0032259 methylation 2.58% (4/155) 3.14 0.001161 0.006663
GO:0016787 hydrolase activity 16.13% (25/155) 0.94 0.00122 0.006785
GO:0032774 RNA biosynthetic process 3.87% (6/155) 2.36 0.001198 0.0068
GO:0140535 intracellular protein-containing complex 3.87% (6/155) 2.35 0.001218 0.006846
GO:0003824 catalytic activity 38.71% (60/155) 0.5 0.001321 0.007272
GO:1905369 endopeptidase complex 1.29% (2/155) 5.09 0.001554 0.008467
GO:0005525 GTP binding 3.87% (6/155) 2.26 0.001691 0.009037
GO:0032561 guanyl ribonucleotide binding 3.87% (6/155) 2.26 0.001691 0.009037
GO:0019001 guanyl nucleotide binding 3.87% (6/155) 2.24 0.001801 0.009527
GO:0042176 regulation of protein catabolic process 1.29% (2/155) 4.91 0.002002 0.010391
GO:0042026 protein refolding 1.29% (2/155) 4.91 0.002002 0.010391
GO:0008186 ATP-dependent activity, acting on RNA 1.94% (3/155) 3.56 0.002166 0.011034
GO:0003724 RNA helicase activity 1.94% (3/155) 3.56 0.002166 0.011034
GO:0043687 post-translational protein modification 3.87% (6/155) 2.14 0.00261 0.013169
GO:0071705 nitrogen compound transport 4.52% (7/155) 1.92 0.002658 0.013291
GO:0006606 protein import into nucleus 1.29% (2/155) 4.6 0.00306 0.015022
GO:0034504 protein localization to nucleus 1.29% (2/155) 4.6 0.00306 0.015022
GO:0034654 nucleobase-containing compound biosynthetic process 4.52% (7/155) 1.88 0.003124 0.015203
GO:0051170 import into nucleus 1.29% (2/155) 4.53 0.003357 0.016048
GO:0003676 nucleic acid binding 16.13% (25/155) 0.83 0.003339 0.016103
GO:0045145 single-stranded DNA 5'-3' DNA exonuclease activity 0.65% (1/155) 7.99 0.003924 0.017972
GO:0035600 tRNA methylthiolation 0.65% (1/155) 7.99 0.003924 0.017972
GO:0035598 N6-threonylcarbomyladenosine methylthiotransferase activity 0.65% (1/155) 7.99 0.003924 0.017972
GO:0008360 regulation of cell shape 0.65% (1/155) 7.99 0.003924 0.017972
GO:0008297 single-stranded DNA exodeoxyribonuclease activity 0.65% (1/155) 7.99 0.003924 0.017972
GO:0006367 transcription initiation at RNA polymerase II promoter 1.29% (2/155) 4.41 0.00399 0.018122
GO:0006520 amino acid metabolic process 3.87% (6/155) 1.99 0.004272 0.019244
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity 1.94% (3/155) 3.2 0.004329 0.019337
GO:0003924 GTPase activity 3.23% (5/155) 2.23 0.004442 0.019682
GO:0043022 ribosome binding 1.29% (2/155) 4.24 0.005036 0.022132
GO:0016407 acetyltransferase activity 1.94% (3/155) 3.12 0.005097 0.022222
GO:0009451 RNA modification 2.58% (4/155) 2.51 0.005548 0.023999
GO:0004386 helicase activity 3.87% (6/155) 1.87 0.006394 0.027441
GO:0051641 cellular localization 4.52% (7/155) 1.68 0.006642 0.028062
GO:1905368 peptidase complex 1.29% (2/155) 4.04 0.006603 0.028114
GO:0043021 ribonucleoprotein complex binding 1.29% (2/155) 3.91 0.007905 0.028532
GO:0001510 RNA methylation 1.29% (2/155) 3.91 0.007905 0.028532
GO:0006364 rRNA processing 1.94% (3/155) 2.89 0.007871 0.02879
GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity 0.65% (1/155) 6.99 0.007833 0.028845
GO:0002953 5'-deoxynucleotidase activity 0.65% (1/155) 6.99 0.007833 0.028845
GO:0006361 transcription initiation at RNA polymerase I promoter 0.65% (1/155) 6.99 0.007833 0.028845
GO:0006420 arginyl-tRNA aminoacylation 0.65% (1/155) 6.99 0.007833 0.028845
GO:0009651 response to salt stress 0.65% (1/155) 6.99 0.007833 0.028845
GO:0001181 RNA polymerase I general transcription initiation factor activity 0.65% (1/155) 6.99 0.007833 0.028845
GO:0003937 IMP cyclohydrolase activity 0.65% (1/155) 6.99 0.007833 0.028845
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 0.65% (1/155) 6.99 0.007833 0.028845
GO:0016418 S-acetyltransferase activity 0.65% (1/155) 6.99 0.007833 0.028845
GO:0003991 acetylglutamate kinase activity 0.65% (1/155) 6.99 0.007833 0.028845
GO:0050497 alkylthioltransferase activity 0.65% (1/155) 6.99 0.007833 0.028845
GO:0006970 response to osmotic stress 0.65% (1/155) 6.99 0.007833 0.028845
GO:0035596 methylthiotransferase activity 0.65% (1/155) 6.99 0.007833 0.028845
GO:0071013 catalytic step 2 spliceosome 0.65% (1/155) 6.99 0.007833 0.028845
GO:0004742 dihydrolipoyllysine-residue acetyltransferase activity 0.65% (1/155) 6.99 0.007833 0.028845
GO:0004814 arginine-tRNA ligase activity 0.65% (1/155) 6.99 0.007833 0.028845
GO:0010506 regulation of autophagy 0.65% (1/155) 6.99 0.007833 0.028845
GO:0030544 Hsp70 protein binding 1.29% (2/155) 3.99 0.007025 0.029451
GO:0071702 organic substance transport 4.52% (7/155) 1.62 0.008349 0.029742
GO:0052689 carboxylic ester hydrolase activity 1.94% (3/155) 2.86 0.008296 0.029745
GO:0003723 RNA binding 6.45% (10/155) 1.32 0.007254 0.030179
GO:0051246 regulation of protein metabolic process 1.94% (3/155) 2.78 0.009651 0.034153
GO:0019438 aromatic compound biosynthetic process 4.52% (7/155) 1.54 0.010891 0.03805
GO:0008270 zinc ion binding 4.52% (7/155) 1.54 0.010891 0.03805
GO:0140223 general transcription initiation factor activity 0.65% (1/155) 6.41 0.011727 0.038734
GO:0004821 histidine-tRNA ligase activity 0.65% (1/155) 6.41 0.011727 0.038734
GO:0032968 positive regulation of transcription elongation by RNA polymerase II 0.65% (1/155) 6.41 0.011727 0.038734
GO:0034243 regulation of transcription elongation by RNA polymerase II 0.65% (1/155) 6.41 0.011727 0.038734
GO:0035312 5'-3' DNA exonuclease activity 0.65% (1/155) 6.41 0.011727 0.038734
GO:0035658 Mon1-Ccz1 complex 0.65% (1/155) 6.41 0.011727 0.038734
GO:0032045 guanyl-nucleotide exchange factor complex 0.65% (1/155) 6.41 0.011727 0.038734
GO:0006427 histidyl-tRNA aminoacylation 0.65% (1/155) 6.41 0.011727 0.038734
GO:0018130 heterocycle biosynthetic process 4.52% (7/155) 1.52 0.011536 0.040044
GO:0005737 cytoplasm 2.58% (4/155) 2.09 0.014864 0.048799
GO:0030490 maturation of SSU-rRNA 0.65% (1/155) 5.99 0.015605 0.049447
GO:0006438 valyl-tRNA aminoacylation 0.65% (1/155) 5.99 0.015605 0.049447
GO:0004832 valine-tRNA ligase activity 0.65% (1/155) 5.99 0.015605 0.049447
GO:0005689 U12-type spliceosomal complex 0.65% (1/155) 5.99 0.015605 0.049447
GO:0032786 positive regulation of DNA-templated transcription, elongation 0.65% (1/155) 5.99 0.015605 0.049447
GO:0008213 protein alkylation 1.29% (2/155) 3.38 0.015948 0.049953
GO:0006479 protein methylation 1.29% (2/155) 3.38 0.015948 0.049953
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (155) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms