Coexpression cluster: Cluster_241 (Zea mays HCCA coexpression clusters - Leiboff and Hake (2019))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0008150 biological_process 72.6% (53/73) 0.97 0.0 0.0
GO:0009987 cellular process 57.53% (42/73) 1.28 0.0 0.0
GO:0044237 cellular metabolic process 35.62% (26/73) 1.23 1.3e-05 0.001395
GO:0006725 cellular aromatic compound metabolic process 20.55% (15/73) 1.79 2.2e-05 0.001444
GO:0006807 nitrogen compound metabolic process 36.99% (27/73) 1.21 1.1e-05 0.001468
GO:0008152 metabolic process 43.84% (32/73) 1.01 2e-05 0.001515
GO:0044238 primary metabolic process 39.73% (29/73) 1.06 3.3e-05 0.00157
GO:1901360 organic cyclic compound metabolic process 20.55% (15/73) 1.76 2.7e-05 0.0016
GO:0006082 organic acid metabolic process 10.96% (8/73) 2.63 4.4e-05 0.001672
GO:0046483 heterocycle metabolic process 20.55% (15/73) 1.8 1.9e-05 0.001699
GO:0006139 nucleobase-containing compound metabolic process 19.18% (14/73) 1.82 3.3e-05 0.001721
GO:0043436 oxoacid metabolic process 10.96% (8/73) 2.64 4.4e-05 0.001783
GO:0005575 cellular_component 31.51% (23/73) 1.37 1.1e-05 0.001882
GO:0019752 carboxylic acid metabolic process 10.96% (8/73) 2.64 4.3e-05 0.001912
GO:1901564 organonitrogen compound metabolic process 28.77% (21/73) 1.28 7.7e-05 0.002721
GO:0005737 cytoplasm 6.85% (5/73) 3.5 8.4e-05 0.002763
GO:0016070 RNA metabolic process 12.33% (9/73) 2.26 0.000104 0.003243
GO:0032991 protein-containing complex 15.07% (11/73) 1.82 0.000261 0.006008
GO:0034641 cellular nitrogen compound metabolic process 20.55% (15/73) 1.5 0.000207 0.006075
GO:0034655 nucleobase-containing compound catabolic process 5.48% (4/73) 3.68 0.00028 0.006165
GO:0031420 alkali metal ion binding 2.74% (2/73) 6.38 0.000259 0.006236
GO:0030955 potassium ion binding 2.74% (2/73) 6.38 0.000259 0.006236
GO:0004743 pyruvate kinase activity 2.74% (2/73) 6.38 0.000259 0.006236
GO:0071704 organic substance metabolic process 38.36% (28/73) 0.91 0.000316 0.006696
GO:0009185 ribonucleoside diphosphate metabolic process 4.11% (3/73) 4.11 0.00072 0.006797
GO:0009181 purine ribonucleoside diphosphate catabolic process 4.11% (3/73) 4.11 0.00072 0.006797
GO:0009179 purine ribonucleoside diphosphate metabolic process 4.11% (3/73) 4.11 0.00072 0.006797
GO:0009154 purine ribonucleotide catabolic process 4.11% (3/73) 4.11 0.00072 0.006797
GO:0009137 purine nucleoside diphosphate catabolic process 4.11% (3/73) 4.11 0.00072 0.006797
GO:0009135 purine nucleoside diphosphate metabolic process 4.11% (3/73) 4.11 0.00072 0.006797
GO:0006096 glycolytic process 4.11% (3/73) 4.11 0.00072 0.006797
GO:0006195 purine nucleotide catabolic process 4.11% (3/73) 4.11 0.00072 0.006797
GO:0009134 nucleoside diphosphate catabolic process 4.11% (3/73) 4.11 0.00072 0.006797
GO:0009191 ribonucleoside diphosphate catabolic process 4.11% (3/73) 4.11 0.00072 0.006797
GO:0046031 ADP metabolic process 4.11% (3/73) 4.11 0.00072 0.006797
GO:0072526 pyridine-containing compound catabolic process 4.11% (3/73) 4.11 0.00072 0.006797
GO:0046032 ADP catabolic process 4.11% (3/73) 4.11 0.00072 0.006797
GO:0019364 pyridine nucleotide catabolic process 4.11% (3/73) 4.11 0.00072 0.006797
GO:0009261 ribonucleotide catabolic process 4.11% (3/73) 4.11 0.00072 0.006797
GO:0072523 purine-containing compound catabolic process 4.11% (3/73) 4.11 0.00072 0.006797
GO:0044281 small molecule metabolic process 12.33% (9/73) 2.1 0.000248 0.006902
GO:0006520 amino acid metabolic process 6.85% (5/73) 2.81 0.000748 0.006942
GO:0046700 heterocycle catabolic process 5.48% (4/73) 3.59 0.000355 0.00696
GO:0009166 nucleotide catabolic process 4.11% (3/73) 4.08 0.000765 0.006977
GO:0044270 cellular nitrogen compound catabolic process 5.48% (4/73) 3.6 0.000348 0.007077
GO:0009132 nucleoside diphosphate metabolic process 4.11% (3/73) 4.05 0.000812 0.007282
GO:0009150 purine ribonucleotide metabolic process 5.48% (4/73) 3.26 0.000834 0.007353
GO:0110156 methylguanosine-cap decapping 2.74% (2/73) 5.99 0.00045 0.008209
GO:0110154 RNA decapping 2.74% (2/73) 5.99 0.00045 0.008209
GO:1901565 organonitrogen compound catabolic process 5.48% (4/73) 3.21 0.000949 0.008228
GO:0009259 ribonucleotide metabolic process 5.48% (4/73) 3.2 0.000979 0.008354
GO:0019693 ribose phosphate metabolic process 5.48% (4/73) 3.18 0.001026 0.008614
GO:1901292 nucleoside phosphate catabolic process 4.11% (3/73) 3.92 0.001047 0.008657
GO:0016874 ligase activity 5.48% (4/73) 3.16 0.001074 0.008743
GO:0043039 tRNA aminoacylation 4.11% (3/73) 4.16 0.000655 0.008881
GO:0043038 amino acid activation 4.11% (3/73) 4.16 0.000655 0.008881
GO:0004812 aminoacyl-tRNA ligase activity 4.11% (3/73) 4.16 0.000655 0.008881
GO:0016875 ligase activity, forming carbon-oxygen bonds 4.11% (3/73) 4.16 0.000655 0.008881
GO:0140098 catalytic activity, acting on RNA 6.85% (5/73) 2.68 0.001137 0.008979
GO:0044248 cellular catabolic process 6.85% (5/73) 2.68 0.001137 0.008979
GO:0046434 organophosphate catabolic process 4.11% (3/73) 3.86 0.001195 0.00916
GO:0006091 generation of precursor metabolites and energy 5.48% (4/73) 3.12 0.001193 0.009283
GO:1901361 organic cyclic compound catabolic process 5.48% (4/73) 3.4 0.00058 0.009292
GO:0005048 signal sequence binding 2.74% (2/73) 5.83 0.000565 0.009332
GO:0042277 peptide binding 2.74% (2/73) 5.83 0.000565 0.009332
GO:0003674 molecular_function 71.23% (52/73) 0.45 0.000707 0.009355
GO:0097159 organic cyclic compound binding 35.62% (26/73) 0.9 0.000629 0.009512
GO:0006418 tRNA aminoacylation for protein translation 4.11% (3/73) 4.19 0.000614 0.009548
GO:0090304 nucleic acid metabolic process 13.7% (10/73) 1.65 0.001267 0.009572
GO:0006090 pyruvate metabolic process 4.11% (3/73) 3.82 0.001289 0.009605
GO:0019439 aromatic compound catabolic process 5.48% (4/73) 3.41 0.000559 0.009853
GO:0033218 amide binding 2.74% (2/73) 5.04 0.001714 0.011931
GO:1901136 carbohydrate derivative catabolic process 4.11% (3/73) 3.69 0.001675 0.011974
GO:0070037 rRNA (pseudouridine) methyltransferase activity 1.37% (1/73) 9.08 0.001848 0.01207
GO:0008608 attachment of spindle microtubules to kinetochore 1.37% (1/73) 9.08 0.001848 0.01207
GO:0051315 attachment of mitotic spindle microtubules to kinetochore 1.37% (1/73) 9.08 0.001848 0.01207
GO:0043167 ion binding 27.4% (20/73) 0.99 0.001666 0.012075
GO:0016052 carbohydrate catabolic process 4.11% (3/73) 3.63 0.001872 0.012075
GO:0140101 catalytic activity, acting on a tRNA 4.11% (3/73) 3.68 0.001713 0.012084
GO:0034660 ncRNA metabolic process 5.48% (4/73) 2.97 0.001762 0.012108
GO:0006163 purine nucleotide metabolic process 5.48% (4/73) 2.99 0.001649 0.012117
GO:0019362 pyridine nucleotide metabolic process 4.11% (3/73) 3.62 0.001913 0.012191
GO:0046496 nicotinamide nucleotide metabolic process 4.11% (3/73) 3.64 0.001831 0.01242
GO:0072521 purine-containing compound metabolic process 5.48% (4/73) 2.92 0.001979 0.012466
GO:0043168 anion binding 20.55% (15/73) 1.18 0.002061 0.012825
GO:0009056 catabolic process 8.22% (6/73) 2.18 0.002144 0.013186
GO:0043170 macromolecule metabolic process 27.4% (20/73) 0.95 0.002238 0.013606
GO:0046034 ATP metabolic process 4.11% (3/73) 3.53 0.002307 0.013714
GO:0072524 pyridine-containing compound metabolic process 4.11% (3/73) 3.53 0.002307 0.013714
GO:0009144 purine nucleoside triphosphate metabolic process 4.11% (3/73) 3.45 0.002697 0.015343
GO:0009205 purine ribonucleoside triphosphate metabolic process 4.11% (3/73) 3.45 0.002697 0.015343
GO:0009117 nucleotide metabolic process 5.48% (4/73) 2.79 0.002741 0.015423
GO:0005488 binding 47.95% (35/73) 0.6 0.002639 0.015511
GO:0051234 establishment of localization 13.7% (10/73) 1.5 0.002683 0.015597
GO:0051179 localization 13.7% (10/73) 1.48 0.002913 0.01605
GO:1901363 heterocyclic compound binding 20.55% (15/73) 1.13 0.002889 0.016087
GO:0006753 nucleoside phosphate metabolic process 5.48% (4/73) 2.74 0.003101 0.01674
GO:0009199 ribonucleoside triphosphate metabolic process 4.11% (3/73) 3.38 0.00307 0.016742
GO:0036094 small molecule binding 20.55% (15/73) 1.12 0.003153 0.016847
GO:0006970 response to osmotic stress 1.37% (1/73) 8.08 0.003693 0.018089
GO:0009651 response to salt stress 1.37% (1/73) 8.08 0.003693 0.018089
GO:0045252 oxoglutarate dehydrogenase complex 1.37% (1/73) 8.08 0.003693 0.018089
GO:0045240 dihydrolipoyl dehydrogenase complex 1.37% (1/73) 8.08 0.003693 0.018089
GO:0016748 succinyltransferase activity 1.37% (1/73) 8.08 0.003693 0.018089
GO:0031307 obsolete integral component of mitochondrial outer membrane 1.37% (1/73) 8.08 0.003693 0.018089
GO:0004149 dihydrolipoyllysine-residue succinyltransferase activity 1.37% (1/73) 8.08 0.003693 0.018089
GO:0016751 S-succinyltransferase activity 1.37% (1/73) 8.08 0.003693 0.018089
GO:0110165 cellular anatomical entity 19.18% (14/73) 1.14 0.003809 0.018153
GO:0009141 nucleoside triphosphate metabolic process 4.11% (3/73) 3.27 0.00378 0.018176
GO:0035639 purine ribonucleoside triphosphate binding 17.81% (13/73) 1.2 0.00376 0.018247
GO:0006399 tRNA metabolic process 4.11% (3/73) 3.3 0.003594 0.01901
GO:0005524 ATP binding 16.44% (12/73) 1.24 0.004296 0.02029
GO:0016740 transferase activity 21.92% (16/73) 1.02 0.004429 0.020732
GO:0010142 farnesyl diphosphate biosynthetic process, mevalonate pathway 1.37% (1/73) 7.49 0.005534 0.022696
GO:0004421 hydroxymethylglutaryl-CoA synthase activity 1.37% (1/73) 7.49 0.005534 0.022696
GO:0004827 proline-tRNA ligase activity 1.37% (1/73) 7.49 0.005534 0.022696
GO:0017128 phospholipid scramblase activity 1.37% (1/73) 7.49 0.005534 0.022696
GO:0097035 regulation of membrane lipid distribution 1.37% (1/73) 7.49 0.005534 0.022696
GO:0045332 phospholipid translocation 1.37% (1/73) 7.49 0.005534 0.022696
GO:0034204 lipid translocation 1.37% (1/73) 7.49 0.005534 0.022696
GO:0017121 plasma membrane phospholipid scrambling 1.37% (1/73) 7.49 0.005534 0.022696
GO:0007009 plasma membrane organization 1.37% (1/73) 7.49 0.005534 0.022696
GO:0006433 prolyl-tRNA aminoacylation 1.37% (1/73) 7.49 0.005534 0.022696
GO:1902767 isoprenoid biosynthetic process via mevalonate 1.37% (1/73) 7.49 0.005534 0.022696
GO:0045337 farnesyl diphosphate biosynthetic process 1.37% (1/73) 7.49 0.005534 0.022696
GO:0045338 farnesyl diphosphate metabolic process 1.37% (1/73) 7.49 0.005534 0.022696
GO:1901135 carbohydrate derivative metabolic process 5.48% (4/73) 2.49 0.005701 0.023199
GO:0032553 ribonucleotide binding 17.81% (13/73) 1.12 0.005874 0.02372
GO:0055086 nucleobase-containing small molecule metabolic process 5.48% (4/73) 2.53 0.0052 0.024132
GO:0032555 purine ribonucleotide binding 17.81% (13/73) 1.14 0.005422 0.024726
GO:0016772 transferase activity, transferring phosphorus-containing groups 13.7% (10/73) 1.36 0.005409 0.024882
GO:0032559 adenyl ribonucleotide binding 16.44% (12/73) 1.17 0.006289 0.025016
GO:0097367 carbohydrate derivative binding 17.81% (13/73) 1.11 0.006276 0.025151
GO:0006810 transport 12.33% (9/73) 1.38 0.007382 0.027694
GO:0004825 methionine-tRNA ligase activity 1.37% (1/73) 7.08 0.007373 0.027858
GO:0006424 glutamyl-tRNA aminoacylation 1.37% (1/73) 7.08 0.007373 0.027858
GO:0006431 methionyl-tRNA aminoacylation 1.37% (1/73) 7.08 0.007373 0.027858
GO:0004818 glutamate-tRNA ligase activity 1.37% (1/73) 7.08 0.007373 0.027858
GO:0005548 phospholipid transporter activity 1.37% (1/73) 7.08 0.007373 0.027858
GO:0001055 RNA polymerase II activity 1.37% (1/73) 7.08 0.007373 0.027858
GO:0008139 nuclear localization sequence binding 1.37% (1/73) 7.08 0.007373 0.027858
GO:0006796 phosphate-containing compound metabolic process 13.7% (10/73) 1.29 0.007531 0.027859
GO:0003824 catalytic activity 41.1% (30/73) 0.59 0.007493 0.027912
GO:0006793 phosphorus metabolic process 13.7% (10/73) 1.28 0.007693 0.02826
GO:0098542 defense response to other organism 2.74% (2/73) 3.91 0.007921 0.028899
GO:0017076 purine nucleotide binding 17.81% (13/73) 1.06 0.008448 0.0304
GO:1901575 organic substance catabolic process 6.85% (5/73) 2.0 0.008406 0.030459
GO:0016417 S-acyltransferase activity 1.37% (1/73) 6.76 0.009207 0.032689
GO:0031262 Ndc80 complex 1.37% (1/73) 6.76 0.009207 0.032689
GO:0030554 adenyl nucleotide binding 16.44% (12/73) 1.09 0.009802 0.034568
GO:0003743 translation initiation factor activity 2.74% (2/73) 3.7 0.010409 0.036467
GO:0004372 glycine hydroxymethyltransferase activity 1.37% (1/73) 6.49 0.011039 0.036497
GO:0035999 tetrahydrofolate interconversion 1.37% (1/73) 6.49 0.011039 0.036497
GO:0000439 transcription factor TFIIH core complex 1.37% (1/73) 6.49 0.011039 0.036497
GO:0019264 glycine biosynthetic process from serine 1.37% (1/73) 6.49 0.011039 0.036497
GO:0045087 innate immune response 1.37% (1/73) 6.49 0.011039 0.036497
GO:0045239 tricarboxylic acid cycle enzyme complex 1.37% (1/73) 6.49 0.011039 0.036497
GO:0005665 RNA polymerase II, core complex 1.37% (1/73) 6.49 0.011039 0.036497
GO:0006545 glycine biosynthetic process 1.37% (1/73) 6.49 0.011039 0.036497
GO:0006955 immune response 1.37% (1/73) 6.49 0.011039 0.036497
GO:0003723 RNA binding 8.22% (6/73) 1.67 0.011535 0.0379
GO:0051707 response to other organism 2.74% (2/73) 3.54 0.012932 0.039772
GO:0043207 response to external biotic stimulus 2.74% (2/73) 3.54 0.012932 0.039772
GO:0032787 monocarboxylic acid metabolic process 4.11% (3/73) 2.62 0.013018 0.039808
GO:0004779 sulfate adenylyltransferase activity 1.37% (1/73) 6.27 0.012867 0.040038
GO:0030942 endoplasmic reticulum signal peptide binding 1.37% (1/73) 6.27 0.012867 0.040038
GO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA 1.37% (1/73) 6.27 0.012867 0.040038
GO:0000103 sulfate assimilation 1.37% (1/73) 6.27 0.012867 0.040038
GO:0005786 signal recognition particle, endoplasmic reticulum targeting 1.37% (1/73) 6.27 0.012867 0.040038
GO:0005047 signal recognition particle binding 1.37% (1/73) 6.27 0.012867 0.040038
GO:0004781 sulfate adenylyltransferase (ATP) activity 1.37% (1/73) 6.27 0.012867 0.040038
GO:0009607 response to biotic stimulus 2.74% (2/73) 3.51 0.013465 0.040471
GO:0044419 biological process involved in interspecies interaction between organisms 2.74% (2/73) 3.51 0.013465 0.040471
GO:0003676 nucleic acid binding 17.81% (13/73) 0.97 0.013455 0.040906
GO:0000166 nucleotide binding 17.81% (13/73) 0.99 0.012688 0.041176
GO:1901265 nucleoside phosphate binding 17.81% (13/73) 0.99 0.012688 0.041176
GO:0000974 Prp19 complex 1.37% (1/73) 6.08 0.014692 0.043177
GO:0002376 immune system process 1.37% (1/73) 6.08 0.014692 0.043177
GO:0006366 transcription by RNA polymerase II 1.37% (1/73) 6.08 0.014692 0.043177
GO:0006730 one-carbon metabolic process 1.37% (1/73) 6.08 0.014692 0.043177
GO:0016773 phosphotransferase activity, alcohol group as acceptor 10.96% (8/73) 1.31 0.015081 0.044075
GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity 1.37% (1/73) 5.91 0.016513 0.046465
GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity 1.37% (1/73) 5.91 0.016513 0.046465
GO:0006528 asparagine metabolic process 1.37% (1/73) 5.91 0.016513 0.046465
GO:0006529 asparagine biosynthetic process 1.37% (1/73) 5.91 0.016513 0.046465
GO:0043015 gamma-tubulin binding 1.37% (1/73) 5.91 0.016513 0.046465
GO:0005815 microtubule organizing center 1.37% (1/73) 5.91 0.016513 0.046465
GO:0000922 spindle pole 1.37% (1/73) 5.91 0.016513 0.046465
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (73) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms