Coexpression cluster: Cluster_263 (Zea mays HCCA coexpression clusters - Leiboff and Hake (2019))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0140640 catalytic activity, acting on a nucleic acid 16.13% (10/62) 2.77 2e-06 0.000616
GO:0003676 nucleic acid binding 27.42% (17/62) 1.6 2.5e-05 0.001631
GO:0005488 binding 58.06% (36/62) 0.88 1.6e-05 0.001704
GO:0006139 nucleobase-containing compound metabolic process 20.97% (13/62) 1.95 2.3e-05 0.00186
GO:0090304 nucleic acid metabolic process 19.35% (12/62) 2.14 1.3e-05 0.002188
GO:0006725 cellular aromatic compound metabolic process 20.97% (13/62) 1.82 6.1e-05 0.002826
GO:0046483 heterocycle metabolic process 20.97% (13/62) 1.83 5.5e-05 0.002956
GO:1901360 organic cyclic compound metabolic process 20.97% (13/62) 1.79 7.4e-05 0.002999
GO:0016071 mRNA metabolic process 6.45% (4/62) 3.6 0.00034 0.011059
GO:0003674 molecular_function 74.19% (46/62) 0.51 0.000321 0.011602
GO:0034641 cellular nitrogen compound metabolic process 20.97% (13/62) 1.53 0.000437 0.012903
GO:0010629 negative regulation of gene expression 4.84% (3/62) 4.12 0.000705 0.0191
GO:0016070 RNA metabolic process 11.29% (7/62) 2.14 0.001037 0.025918
GO:0050794 regulation of cellular process 17.74% (11/62) 1.46 0.001879 0.033934
GO:0051103 DNA ligation involved in DNA repair 1.61% (1/62) 9.32 0.00157 0.03401
GO:0006266 DNA ligation 1.61% (1/62) 9.32 0.00157 0.03401
GO:0006402 mRNA catabolic process 3.23% (2/62) 4.99 0.00182 0.034787
GO:0010605 negative regulation of macromolecule metabolic process 4.84% (3/62) 3.29 0.00367 0.035081
GO:0009892 negative regulation of metabolic process 4.84% (3/62) 3.29 0.00367 0.035081
GO:0044237 cellular metabolic process 29.03% (18/62) 0.94 0.003914 0.035338
GO:0097159 organic cyclic compound binding 33.87% (21/62) 0.83 0.004029 0.035386
GO:0019222 regulation of metabolic process 14.52% (9/62) 1.52 0.003828 0.035543
GO:0031327 negative regulation of cellular biosynthetic process 4.84% (3/62) 3.46 0.002626 0.035561
GO:0010558 negative regulation of macromolecule biosynthetic process 4.84% (3/62) 3.46 0.002626 0.035561
GO:0009890 negative regulation of biosynthetic process 4.84% (3/62) 3.46 0.002626 0.035561
GO:0040029 epigenetic regulation of gene expression 3.23% (2/62) 4.89 0.0021 0.035925
GO:0043170 macromolecule metabolic process 29.03% (18/62) 1.04 0.001802 0.03661
GO:0004386 helicase activity 6.45% (4/62) 2.6 0.004289 0.036682
GO:0065007 biological regulation 17.74% (11/62) 1.34 0.003637 0.036943
GO:0140098 catalytic activity, acting on RNA 6.45% (4/62) 2.59 0.004435 0.036959
GO:0050789 regulation of biological process 17.74% (11/62) 1.38 0.002973 0.037161
GO:0003677 DNA binding 14.52% (9/62) 1.54 0.003547 0.037185
GO:0140993 histone modifying activity 3.23% (2/62) 4.82 0.002298 0.037341
GO:0031323 regulation of cellular metabolic process 14.52% (9/62) 1.54 0.003465 0.037534
GO:0004642 phosphoribosylformylglycinamidine synthase activity 1.61% (1/62) 8.32 0.003137 0.03776
GO:0006807 nitrogen compound metabolic process 30.65% (19/62) 0.94 0.002914 0.037882
GO:0003910 DNA ligase (ATP) activity 1.61% (1/62) 7.73 0.004702 0.038202
GO:0004722 protein serine/threonine phosphatase activity 3.23% (2/62) 4.27 0.004875 0.03864
GO:0031324 negative regulation of cellular metabolic process 4.84% (3/62) 3.32 0.003464 0.038822
GO:0006401 RNA catabolic process 3.23% (2/62) 4.53 0.003412 0.039607
GO:0140657 ATP-dependent activity 9.68% (6/62) 2.11 0.002619 0.040533
GO:0048523 negative regulation of cellular process 4.84% (3/62) 3.04 0.005932 0.044838
GO:0006259 DNA metabolic process 8.06% (5/62) 2.12 0.005881 0.045508
GO:0003909 DNA ligase activity 1.61% (1/62) 7.32 0.006264 0.04627
GO:0006396 RNA processing 6.45% (4/62) 2.43 0.006506 0.046985
GO:0034654 nucleobase-containing compound biosynthetic process 6.45% (4/62) 2.4 0.007096 0.049067
GO:0006470 protein dephosphorylation 3.23% (2/62) 3.98 0.007253 0.049108
GO:0048519 negative regulation of biological process 4.84% (3/62) 2.95 0.007041 0.049749
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (62) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms