Coexpression cluster: Cluster_647 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0051192 prosthetic group binding 8.2% (5/61) 9.11 0.0 0.0
GO:0140414 phosphopantetheine-dependent carrier activity 8.2% (5/61) 9.11 0.0 0.0
GO:0000036 acyl carrier activity 8.2% (5/61) 9.11 0.0 0.0
GO:0044620 ACP phosphopantetheine attachment site binding 8.2% (5/61) 9.11 0.0 0.0
GO:0016297 acyl-[acyl-carrier-protein] hydrolase activity 8.2% (5/61) 9.46 0.0 0.0
GO:0016790 thiolester hydrolase activity 8.2% (5/61) 7.1 0.0 0.0
GO:0140104 molecular carrier activity 8.2% (5/61) 6.29 0.0 0.0
GO:0003959 NADPH dehydrogenase activity 4.92% (3/61) 9.12 0.0 1e-06
GO:0006633 fatty acid biosynthetic process 8.2% (5/61) 5.87 0.0 1e-06
GO:0072330 monocarboxylic acid biosynthetic process 8.2% (5/61) 5.58 0.0 3e-06
GO:0006631 fatty acid metabolic process 8.2% (5/61) 4.81 1e-06 3.3e-05
GO:0048200 Golgi transport vesicle coating 3.28% (2/61) 9.94 2e-06 4.6e-05
GO:0048205 COPI coating of Golgi vesicle 3.28% (2/61) 9.94 2e-06 4.6e-05
GO:0032787 monocarboxylic acid metabolic process 9.84% (6/61) 4.05 2e-06 5.1e-05
GO:0009733 response to auxin 4.92% (3/61) 6.92 2e-06 5.2e-05
GO:0005515 protein binding 26.23% (16/61) 1.81 8e-06 0.000157
GO:0046394 carboxylic acid biosynthetic process 8.2% (5/61) 3.97 1.8e-05 0.000331
GO:0016053 organic acid biosynthetic process 8.2% (5/61) 3.97 1.8e-05 0.000331
GO:0006901 vesicle coating 3.28% (2/61) 8.12 2.5e-05 0.000438
GO:0008150 biological_process 52.46% (32/61) 0.92 4.2e-05 0.000699
GO:0003674 molecular_function 60.66% (37/61) 0.78 5e-05 0.000718
GO:0005488 binding 45.9% (28/61) 1.02 4.8e-05 0.000727
GO:0050794 regulation of cellular process 19.67% (12/61) 1.96 4.6e-05 0.00073
GO:0050789 regulation of biological process 19.67% (12/61) 1.89 7.4e-05 0.000946
GO:0017119 Golgi transport complex 3.28% (2/61) 7.35 7.3e-05 0.00097
GO:2001141 regulation of RNA biosynthetic process 13.11% (8/61) 2.49 8.6e-05 0.000989
GO:0006355 regulation of DNA-templated transcription 13.11% (8/61) 2.49 8.6e-05 0.000989
GO:0016651 oxidoreductase activity, acting on NAD(P)H 4.92% (3/61) 5.26 7.2e-05 0.000991
GO:0016050 vesicle organization 4.92% (3/61) 5.19 8.3e-05 0.001026
GO:0044283 small molecule biosynthetic process 8.2% (5/61) 3.42 0.000111 0.001229
GO:0051252 regulation of RNA metabolic process 13.11% (8/61) 2.42 0.000122 0.001304
GO:0044255 cellular lipid metabolic process 9.84% (6/61) 2.95 0.000127 0.00132
GO:0065007 biological regulation 19.67% (12/61) 1.79 0.000145 0.001456
GO:0019219 regulation of nucleobase-containing compound metabolic process 13.11% (8/61) 2.36 0.000159 0.001556
GO:0008610 lipid biosynthetic process 8.2% (5/61) 3.28 0.000173 0.001641
GO:0009725 response to hormone 4.92% (3/61) 4.73 0.000209 0.001931
GO:0006082 organic acid metabolic process 9.84% (6/61) 2.75 0.000271 0.00225
GO:0043436 oxoacid metabolic process 9.84% (6/61) 2.75 0.00027 0.002298
GO:0009719 response to endogenous stimulus 4.92% (3/61) 4.57 0.000293 0.002313
GO:0043227 membrane-bounded organelle 21.31% (13/61) 1.59 0.000286 0.002313
GO:0019752 carboxylic acid metabolic process 9.84% (6/61) 2.76 0.000266 0.002323
GO:0043231 intracellular membrane-bounded organelle 21.31% (13/61) 1.6 0.000266 0.002383
GO:0051171 regulation of nitrogen compound metabolic process 13.11% (8/61) 2.18 0.000368 0.00284
GO:0080090 regulation of primary metabolic process 13.11% (8/61) 2.17 0.000392 0.002955
GO:0008330 protein tyrosine/threonine phosphatase activity 1.64% (1/61) 10.68 0.000609 0.004043
GO:0033550 MAP kinase tyrosine phosphatase activity 1.64% (1/61) 10.68 0.000609 0.004043
GO:0017017 MAP kinase tyrosine/serine/threonine phosphatase activity 1.64% (1/61) 10.68 0.000609 0.004043
GO:0010468 regulation of gene expression 13.11% (8/61) 2.09 0.000561 0.004138
GO:0006629 lipid metabolic process 9.84% (6/61) 2.54 0.000588 0.004153
GO:0009889 regulation of biosynthetic process 13.11% (8/61) 2.05 0.000661 0.004222
GO:0010556 regulation of macromolecule biosynthetic process 13.11% (8/61) 2.08 0.000586 0.004231
GO:0031326 regulation of cellular biosynthetic process 13.11% (8/61) 2.05 0.000658 0.004284
GO:0016788 hydrolase activity, acting on ester bonds 9.84% (6/61) 2.43 0.000866 0.005426
GO:0043226 organelle 21.31% (13/61) 1.39 0.001106 0.006444
GO:0060255 regulation of macromolecule metabolic process 13.11% (8/61) 1.95 0.001055 0.006486
GO:0043229 intracellular organelle 21.31% (13/61) 1.39 0.001105 0.006553
GO:0031323 regulation of cellular metabolic process 13.11% (8/61) 1.94 0.001096 0.006619
GO:0019222 regulation of metabolic process 13.11% (8/61) 1.89 0.001341 0.007673
GO:0003700 DNA-binding transcription factor activity 8.2% (5/61) 2.61 0.00139 0.00782
GO:0016192 vesicle-mediated transport 6.56% (4/61) 3.0 0.001618 0.008953
GO:0010033 response to organic substance 4.92% (3/61) 3.69 0.001676 0.009123
GO:0006891 intra-Golgi vesicle-mediated transport 3.28% (2/61) 4.96 0.001951 0.01045
GO:0006897 endocytosis 3.28% (2/61) 4.77 0.002531 0.013335
GO:0140110 transcription regulator activity 8.2% (5/61) 2.36 0.002967 0.015393
GO:0044281 small molecule metabolic process 9.84% (6/61) 2.05 0.003266 0.016184
GO:0033549 MAP kinase phosphatase activity 1.64% (1/61) 8.27 0.003243 0.016315
GO:0043409 negative regulation of MAPK cascade 1.64% (1/61) 8.27 0.003243 0.016315
GO:0043565 sequence-specific DNA binding 6.56% (4/61) 2.7 0.003428 0.016495
GO:0042221 response to chemical 4.92% (3/61) 3.33 0.003411 0.016653
GO:0098657 import into cell 3.28% (2/61) 4.39 0.004216 0.019997
GO:0009959 negative gravitropism 1.64% (1/61) 7.62 0.005063 0.023675
GO:0043408 regulation of MAPK cascade 1.64% (1/61) 7.22 0.006678 0.030371
GO:0005773 vacuole 3.28% (2/61) 4.05 0.006604 0.030451
GO:0099023 vesicle tethering complex 3.28% (2/61) 4.0 0.007049 0.031626
GO:0005634 nucleus 11.48% (7/61) 1.63 0.007176 0.031766
GO:1902532 negative regulation of intracellular signal transduction 1.64% (1/61) 6.98 0.007887 0.034455
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding 3.28% (2/61) 3.91 0.008003 0.034508
GO:0004340 glucokinase activity 1.64% (1/61) 6.87 0.008492 0.036143
GO:0033500 carbohydrate homeostasis 1.64% (1/61) 6.73 0.009397 0.037141
GO:0001678 intracellular glucose homeostasis 1.64% (1/61) 6.73 0.009397 0.037141
GO:0042593 glucose homeostasis 1.64% (1/61) 6.73 0.009397 0.037141
GO:0005536 glucose binding 1.64% (1/61) 6.73 0.009397 0.037141
GO:0000987 cis-regulatory region sequence-specific DNA binding 3.28% (2/61) 3.82 0.009024 0.037452
GO:0004725 protein tyrosine phosphatase activity 1.64% (1/61) 6.79 0.008995 0.037801
GO:0044249 cellular biosynthetic process 9.84% (6/61) 1.71 0.010081 0.039376
GO:0008138 protein tyrosine/serine/threonine phosphatase activity 1.64% (1/61) 6.59 0.010302 0.03977
GO:0006996 organelle organization 6.56% (4/61) 2.21 0.010971 0.040027
GO:0009629 response to gravity 1.64% (1/61) 6.51 0.010905 0.040226
GO:0009630 gravitropism 1.64% (1/61) 6.51 0.010905 0.040226
GO:0008865 fructokinase activity 1.64% (1/61) 6.51 0.010905 0.040226
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific 3.28% (2/61) 3.68 0.010866 0.041466
GO:0004396 hexokinase activity 1.64% (1/61) 6.4 0.011808 0.042612
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding 3.28% (2/61) 3.59 0.012202 0.043559
GO:0046835 carbohydrate phosphorylation 1.64% (1/61) 6.32 0.01241 0.043831
GO:0004575 sucrose alpha-glucosidase activity 1.64% (1/61) 6.23 0.013212 0.045691
GO:0005987 sucrose catabolic process 1.64% (1/61) 6.23 0.013212 0.045691
GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity 1.64% (1/61) 6.2 0.013512 0.046248
GO:0009968 negative regulation of signal transduction 1.64% (1/61) 6.05 0.015014 0.047928
GO:0010648 negative regulation of cell communication 1.64% (1/61) 6.05 0.015014 0.047928
GO:0023057 negative regulation of signaling 1.64% (1/61) 6.05 0.015014 0.047928
GO:1901576 organic substance biosynthetic process 9.84% (6/61) 1.59 0.014752 0.048978
GO:0005905 clathrin-coated pit 1.64% (1/61) 6.06 0.014914 0.049023
GO:0004564 beta-fructofuranosidase activity 1.64% (1/61) 6.08 0.014714 0.049342
GO:0090599 alpha-glucosidase activity 1.64% (1/61) 6.09 0.014613 0.049507
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (61) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms