Coexpression cluster: Cluster_595 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0015031 protein transport 16.09% (14/87) 4.57 0.0 0.0
GO:0098796 membrane protein complex 16.09% (14/87) 4.53 0.0 0.0
GO:0016192 vesicle-mediated transport 17.24% (15/87) 4.4 0.0 0.0
GO:0071705 nitrogen compound transport 18.39% (16/87) 4.03 0.0 0.0
GO:0045184 establishment of protein localization 16.09% (14/87) 4.27 0.0 0.0
GO:0033036 macromolecule localization 16.09% (14/87) 4.1 0.0 0.0
GO:0006886 intracellular protein transport 13.79% (12/87) 4.68 0.0 0.0
GO:0071702 organic substance transport 18.39% (16/87) 3.7 0.0 0.0
GO:0070727 cellular macromolecule localization 16.09% (14/87) 4.11 0.0 0.0
GO:0008104 protein localization 16.09% (14/87) 4.11 0.0 0.0
GO:0030117 membrane coat 9.2% (8/87) 5.82 0.0 0.0
GO:0048531 beta-1,3-galactosyltransferase activity 4.6% (4/87) 10.23 0.0 0.0
GO:0051641 cellular localization 16.09% (14/87) 3.6 0.0 0.0
GO:0048193 Golgi vesicle transport 10.34% (9/87) 5.02 0.0 0.0
GO:0030120 vesicle coat 8.05% (7/87) 5.9 0.0 0.0
GO:0046907 intracellular transport 13.79% (12/87) 3.89 0.0 0.0
GO:0005575 cellular_component 51.72% (45/87) 1.37 0.0 0.0
GO:0000139 Golgi membrane 8.05% (7/87) 5.83 0.0 0.0
GO:0051649 establishment of localization in cell 13.79% (12/87) 3.84 0.0 0.0
GO:0006810 transport 21.84% (19/87) 2.56 0.0 0.0
GO:0098588 bounding membrane of organelle 11.49% (10/87) 4.08 0.0 0.0
GO:0051234 establishment of localization 21.84% (19/87) 2.49 0.0 0.0
GO:0016020 membrane 26.44% (23/87) 2.14 0.0 0.0
GO:0051179 localization 21.84% (19/87) 2.44 0.0 0.0
GO:0031090 organelle membrane 12.64% (11/87) 3.63 0.0 0.0
GO:0032991 protein-containing complex 22.99% (20/87) 2.31 0.0 0.0
GO:0071692 protein localization to extracellular region 4.6% (4/87) 7.74 0.0 0.0
GO:0035592 establishment of protein localization to extracellular region 4.6% (4/87) 7.74 0.0 0.0
GO:0009306 protein secretion 4.6% (4/87) 7.74 0.0 0.0
GO:0030126 COPI vesicle coat 5.75% (5/87) 6.28 0.0 0.0
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport 6.9% (6/87) 5.32 0.0 0.0
GO:0030121 AP-1 adaptor complex 3.45% (3/87) 8.85 0.0 1e-06
GO:0006891 intra-Golgi vesicle-mediated transport 5.75% (5/87) 5.77 0.0 1e-06
GO:0110165 cellular anatomical entity 42.53% (37/87) 1.27 0.0 1e-06
GO:0008378 galactosyltransferase activity 4.6% (4/87) 6.78 0.0 1e-06
GO:0035615 clathrin adaptor activity 3.45% (3/87) 8.34 0.0 2e-06
GO:0140312 cargo adaptor activity 3.45% (3/87) 8.15 0.0 2e-06
GO:0030131 clathrin adaptor complex 3.45% (3/87) 7.4 1e-06 1e-05
GO:0009987 cellular process 40.23% (35/87) 1.13 2e-06 2.1e-05
GO:0005793 endoplasmic reticulum-Golgi intermediate compartment 3.45% (3/87) 6.98 2e-06 2.3e-05
GO:0030119 AP-type membrane coat adaptor complex 3.45% (3/87) 6.86 3e-06 2.9e-05
GO:0006896 Golgi to vacuole transport 3.45% (3/87) 6.79 3e-06 3.3e-05
GO:0030674 protein-macromolecule adaptor activity 4.6% (4/87) 5.35 3e-06 3.5e-05
GO:0005783 endoplasmic reticulum 6.9% (6/87) 3.9 4e-06 3.7e-05
GO:0005198 structural molecule activity 6.9% (6/87) 3.85 4e-06 4.3e-05
GO:0000839 Hrd1p ubiquitin ligase ERAD-L complex 2.3% (2/87) 9.0 7e-06 6.4e-05
GO:0000836 Hrd1p ubiquitin ligase complex 2.3% (2/87) 9.0 7e-06 6.4e-05
GO:0000835 ER ubiquitin ligase complex 2.3% (2/87) 9.0 7e-06 6.4e-05
GO:0002020 protease binding 2.3% (2/87) 9.0 7e-06 6.4e-05
GO:1990381 ubiquitin-specific protease binding 2.3% (2/87) 9.0 7e-06 6.4e-05
GO:1901564 organonitrogen compound metabolic process 24.14% (21/87) 1.54 7e-06 6.5e-05
GO:0032940 secretion by cell 4.6% (4/87) 5.01 8e-06 7.3e-05
GO:0060090 molecular adaptor activity 4.6% (4/87) 4.98 9e-06 7.8e-05
GO:0046903 secretion 4.6% (4/87) 4.95 1e-05 8.1e-05
GO:0019538 protein metabolic process 20.69% (18/87) 1.67 1e-05 8.5e-05
GO:0010071 root meristem specification 2.3% (2/87) 8.4 1.7e-05 0.000119
GO:0010074 maintenance of meristem identity 2.3% (2/87) 8.4 1.7e-05 0.000119
GO:0010078 maintenance of root meristem identity 2.3% (2/87) 8.4 1.7e-05 0.000119
GO:0019827 stem cell population maintenance 2.3% (2/87) 8.4 1.7e-05 0.000119
GO:0090421 embryonic meristem initiation 2.3% (2/87) 8.4 1.7e-05 0.000119
GO:0010492 maintenance of shoot apical meristem identity 2.3% (2/87) 8.4 1.7e-05 0.000119
GO:0098727 maintenance of cell number 2.3% (2/87) 8.4 1.7e-05 0.000119
GO:0008150 biological_process 49.43% (43/87) 0.83 1.6e-05 0.000124
GO:0140352 export from cell 4.6% (4/87) 4.78 1.6e-05 0.000126
GO:0010014 meristem initiation 2.3% (2/87) 8.08 2.6e-05 0.000182
GO:0006892 post-Golgi vesicle-mediated transport 3.45% (3/87) 5.53 4.2e-05 0.000285
GO:0043413 macromolecule glycosylation 4.6% (4/87) 4.36 4.9e-05 0.000321
GO:0006486 protein glycosylation 4.6% (4/87) 4.36 4.9e-05 0.000321
GO:0051787 misfolded protein binding 2.3% (2/87) 7.58 5.3e-05 0.000342
GO:0000153 cytoplasmic ubiquitin ligase complex 2.3% (2/87) 7.51 5.9e-05 0.000376
GO:0043226 organelle 21.84% (19/87) 1.42 6.3e-05 0.000388
GO:0043229 intracellular organelle 21.84% (19/87) 1.42 6.3e-05 0.000393
GO:0070085 glycosylation 4.6% (4/87) 4.26 6.2e-05 0.000395
GO:0012505 endomembrane system 3.45% (3/87) 5.12 9.7e-05 0.000587
GO:0043231 intracellular membrane-bounded organelle 19.54% (17/87) 1.48 0.000102 0.000613
GO:0043227 membrane-bounded organelle 19.54% (17/87) 1.47 0.000112 0.000663
GO:0007034 vacuolar transport 3.45% (3/87) 4.83 0.000176 0.001027
GO:0003924 GTPase activity 4.6% (4/87) 3.73 0.000255 0.00147
GO:0140534 endoplasmic reticulum protein-containing complex 3.45% (3/87) 4.58 0.00029 0.001647
GO:0005525 GTP binding 4.6% (4/87) 3.67 0.000299 0.001657
GO:0032561 guanyl ribonucleotide binding 4.6% (4/87) 3.67 0.000299 0.001657
GO:0030968 endoplasmic reticulum unfolded protein response 2.3% (2/87) 6.29 0.000314 0.001719
GO:0019001 guanyl nucleotide binding 4.6% (4/87) 3.63 0.000335 0.00181
GO:0036211 protein modification process 14.94% (13/87) 1.59 0.00036 0.001925
GO:0043401 steroid hormone mediated signaling pathway 2.3% (2/87) 6.18 0.000369 0.001928
GO:0009742 brassinosteroid mediated signaling pathway 2.3% (2/87) 6.18 0.000369 0.001928
GO:0051049 regulation of transport 2.3% (2/87) 5.91 0.000529 0.002732
GO:0048278 vesicle docking 2.3% (2/87) 5.76 0.000655 0.003343
GO:0000159 protein phosphatase type 2A complex 2.3% (2/87) 5.68 0.000728 0.003674
GO:0015179 L-amino acid transmembrane transporter activity 2.3% (2/87) 5.45 0.001007 0.005026
GO:0008514 organic anion transmembrane transporter activity 3.45% (3/87) 3.89 0.001146 0.005657
GO:0043412 macromolecule modification 14.94% (13/87) 1.41 0.001165 0.005687
GO:0008287 protein serine/threonine phosphatase complex 2.3% (2/87) 5.28 0.001259 0.006015
GO:1903293 phosphatase complex 2.3% (2/87) 5.28 0.001259 0.006015
GO:0032879 regulation of localization 2.3% (2/87) 5.26 0.001302 0.006152
GO:0006807 nitrogen compound metabolic process 24.14% (21/87) 1.0 0.00134 0.006265
GO:0004252 serine-type endopeptidase activity 3.45% (3/87) 3.81 0.001357 0.006281
GO:0022406 membrane docking 2.3% (2/87) 4.99 0.001886 0.008554
GO:0140056 organelle localization by membrane tethering 2.3% (2/87) 4.99 0.001886 0.008554
GO:0030176 obsolete integral component of endoplasmic reticulum membrane 2.3% (2/87) 4.98 0.001912 0.008584
GO:0061024 membrane organization 3.45% (3/87) 3.59 0.002067 0.009191
GO:0043603 amide metabolic process 4.6% (4/87) 2.87 0.002298 0.010118
GO:0019888 protein phosphatase regulator activity 2.3% (2/87) 4.82 0.002371 0.010335
GO:0019208 phosphatase regulator activity 2.3% (2/87) 4.79 0.002476 0.010488
GO:0061617 MICOS complex 1.15% (1/87) 8.67 0.002458 0.010512
GO:0003006 developmental process involved in reproduction 2.3% (2/87) 4.79 0.002447 0.010565
GO:0003674 molecular_function 50.57% (44/87) 0.52 0.002545 0.010679
GO:0030433 ubiquitin-dependent ERAD pathway 2.3% (2/87) 4.71 0.002754 0.010751
GO:1904951 positive regulation of establishment of protein localization 1.15% (1/87) 8.51 0.002747 0.01082
GO:0090316 positive regulation of intracellular protein transport 1.15% (1/87) 8.51 0.002747 0.01082
GO:0033157 regulation of intracellular protein transport 1.15% (1/87) 8.51 0.002747 0.01082
GO:0051222 positive regulation of protein transport 1.15% (1/87) 8.51 0.002747 0.01082
GO:0070863 positive regulation of protein exit from endoplasmic reticulum 1.15% (1/87) 8.51 0.002747 0.01082
GO:0070861 regulation of protein exit from endoplasmic reticulum 1.15% (1/87) 8.51 0.002747 0.01082
GO:0032388 positive regulation of intracellular transport 1.15% (1/87) 8.43 0.002892 0.01091
GO:0051223 regulation of protein transport 1.15% (1/87) 8.43 0.002892 0.01091
GO:1903829 positive regulation of protein localization 1.15% (1/87) 8.43 0.002892 0.01091
GO:0070201 regulation of establishment of protein localization 1.15% (1/87) 8.43 0.002892 0.01091
GO:0016740 transferase activity 17.24% (15/87) 1.15 0.00271 0.011266
GO:0051050 positive regulation of transport 1.15% (1/87) 8.36 0.003036 0.011359
GO:0036503 ERAD pathway 2.3% (2/87) 4.49 0.003705 0.013747
GO:0016757 glycosyltransferase activity 5.75% (5/87) 2.27 0.003948 0.014532
GO:0004106 chorismate mutase activity 1.15% (1/87) 7.95 0.004046 0.014769
GO:0004674 protein serine/threonine kinase activity 5.75% (5/87) 2.21 0.004654 0.0162
GO:0004758 serine C-palmitoyltransferase activity 1.15% (1/87) 7.75 0.004623 0.016215
GO:0002178 palmitoyltransferase complex 1.15% (1/87) 7.75 0.004623 0.016215
GO:0017059 serine C-palmitoyltransferase complex 1.15% (1/87) 7.75 0.004623 0.016215
GO:0016454 C-palmitoyltransferase activity 1.15% (1/87) 7.75 0.004623 0.016215
GO:0031211 endoplasmic reticulum palmitoyltransferase complex 1.15% (1/87) 7.75 0.004623 0.016215
GO:0005460 UDP-glucose transmembrane transporter activity 1.15% (1/87) 7.71 0.004767 0.016463
GO:0016758 hexosyltransferase activity 4.6% (4/87) 2.56 0.004902 0.016801
GO:0006897 endocytosis 2.3% (2/87) 4.25 0.005067 0.016853
GO:0030130 clathrin coat of trans-Golgi network vesicle 1.15% (1/87) 7.62 0.005055 0.016937
GO:0030132 clathrin coat of coated pit 1.15% (1/87) 7.62 0.005055 0.016937
GO:0010243 response to organonitrogen compound 2.3% (2/87) 4.26 0.005 0.017006
GO:0043170 macromolecule metabolic process 20.69% (18/87) 0.93 0.005432 0.017932
GO:0003878 ATP citrate synthase activity 1.15% (1/87) 7.47 0.005631 0.018455
GO:0003333 amino acid transmembrane transport 2.3% (2/87) 4.16 0.00575 0.018709
GO:0016050 vesicle organization 2.3% (2/87) 4.09 0.006322 0.020133
GO:0017171 serine hydrolase activity 3.45% (3/87) 3.02 0.00628 0.02014
GO:0008236 serine-type peptidase activity 3.45% (3/87) 3.02 0.00628 0.02014
GO:1901698 response to nitrogen compound 2.3% (2/87) 4.07 0.006519 0.020468
GO:0032880 regulation of protein localization 1.15% (1/87) 7.26 0.006494 0.020535
GO:0006511 ubiquitin-dependent protein catabolic process 3.45% (3/87) 2.92 0.007483 0.023332
GO:1903825 organic acid transmembrane transport 2.3% (2/87) 3.92 0.007936 0.024405
GO:1905039 carboxylic acid transmembrane transport 2.3% (2/87) 3.92 0.007936 0.024405
GO:0003400 regulation of COPII vesicle coating 1.15% (1/87) 6.92 0.008219 0.024935
GO:0043604 amide biosynthetic process 3.45% (3/87) 2.88 0.008179 0.024983
GO:0098657 import into cell 2.3% (2/87) 3.88 0.008391 0.025116
GO:0007165 signal transduction 5.75% (5/87) 2.01 0.008371 0.025227
GO:0034976 response to endoplasmic reticulum stress 2.3% (2/87) 3.84 0.008822 0.026232
GO:0009755 hormone-mediated signaling pathway 2.3% (2/87) 3.79 0.009424 0.027839
GO:0019941 modification-dependent protein catabolic process 3.45% (3/87) 2.79 0.009675 0.028393
GO:0140096 catalytic activity, acting on a protein 12.64% (11/87) 1.16 0.009776 0.028501
GO:0005459 UDP-galactose transmembrane transporter activity 1.15% (1/87) 6.62 0.010084 0.029212
GO:0006865 amino acid transport 2.3% (2/87) 3.66 0.011104 0.030588
GO:0015171 amino acid transmembrane transporter activity 2.3% (2/87) 3.68 0.010835 0.030597
GO:0006470 protein dephosphorylation 2.3% (2/87) 3.68 0.010835 0.030597
GO:0032386 regulation of intracellular transport 1.15% (1/87) 6.49 0.011087 0.03073
GO:0055038 recycling endosome membrane 1.15% (1/87) 6.49 0.011087 0.03073
GO:0044238 primary metabolic process 24.14% (21/87) 0.75 0.010722 0.03086
GO:0043632 modification-dependent macromolecule catabolic process 3.45% (3/87) 2.73 0.010813 0.030925
GO:0098798 mitochondrial protein-containing complex 2.3% (2/87) 3.67 0.011085 0.031107
GO:0008180 COP9 signalosome 1.15% (1/87) 6.34 0.012232 0.033286
GO:0050794 regulation of cellular process 11.49% (10/87) 1.19 0.012229 0.03348
GO:0046943 carboxylic acid transmembrane transporter activity 2.3% (2/87) 3.57 0.012618 0.033723
GO:0005342 organic acid transmembrane transporter activity 2.3% (2/87) 3.57 0.012618 0.033723
GO:1903530 regulation of secretion by cell 1.15% (1/87) 6.25 0.01309 0.033778
GO:0030118 clathrin coat 1.15% (1/87) 6.25 0.01309 0.033778
GO:0051046 regulation of secretion 1.15% (1/87) 6.25 0.01309 0.033778
GO:0030125 clathrin vesicle coat 1.15% (1/87) 6.25 0.01309 0.033778
GO:0032588 trans-Golgi network membrane 1.15% (1/87) 6.25 0.01309 0.033778
GO:0016408 C-acyltransferase activity 1.15% (1/87) 6.31 0.012518 0.03386
GO:0017157 regulation of exocytosis 1.15% (1/87) 6.26 0.012947 0.034398
GO:1902494 catalytic complex 5.75% (5/87) 1.81 0.014455 0.036877
GO:0046417 chorismate metabolic process 1.15% (1/87) 6.11 0.014375 0.036883
GO:0060341 regulation of cellular localization 1.15% (1/87) 6.08 0.014661 0.037191
GO:0051640 organelle localization 2.3% (2/87) 3.43 0.01518 0.03829
GO:0005634 nucleus 9.2% (8/87) 1.31 0.015329 0.03845
GO:0032501 multicellular organismal process 2.3% (2/87) 3.41 0.015425 0.038476
GO:0006796 phosphate-containing compound metabolic process 10.34% (9/87) 1.21 0.016062 0.039194
GO:0017111 ribonucleoside triphosphate phosphatase activity 4.6% (4/87) 2.06 0.015981 0.039211
GO:0005762 mitochondrial large ribosomal subunit 1.15% (1/87) 5.96 0.015944 0.039335
GO:0000315 organellar large ribosomal subunit 1.15% (1/87) 5.96 0.015944 0.039335
GO:0006793 phosphorus metabolic process 10.34% (9/87) 1.2 0.016614 0.040324
GO:0015849 organic acid transport 2.3% (2/87) 3.34 0.016884 0.040325
GO:0046942 carboxylic acid transport 2.3% (2/87) 3.34 0.016884 0.040325
GO:0050789 regulation of biological process 11.49% (10/87) 1.12 0.016737 0.040402
GO:0004175 endopeptidase activity 3.45% (3/87) 2.48 0.017125 0.040683
GO:0051603 proteolysis involved in protein catabolic process 3.45% (3/87) 2.44 0.018166 0.042929
GO:0006904 vesicle docking involved in exocytosis 1.15% (1/87) 5.66 0.019642 0.046175
GO:0046513 ceramide biosynthetic process 1.15% (1/87) 5.65 0.019784 0.046267
GO:0016462 pyrophosphatase activity 4.6% (4/87) 1.96 0.019918 0.046338
GO:0071704 organic substance metabolic process 24.14% (21/87) 0.66 0.020317 0.047023
GO:0015711 organic anion transport 2.3% (2/87) 3.19 0.020499 0.047201
GO:0046912 acyltransferase activity, acyl groups converted into alkyl on transfer 1.15% (1/87) 5.57 0.020778 0.047598
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 4.6% (4/87) 1.94 0.021046 0.047727
GO:0004672 protein kinase activity 8.05% (7/87) 1.34 0.02102 0.047909
GO:0060627 regulation of vesicle-mediated transport 1.15% (1/87) 5.53 0.021486 0.048479
GO:0016817 hydrolase activity, acting on acid anhydrides 4.6% (4/87) 1.92 0.021702 0.048721
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (87) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms