Coexpression cluster: Cluster_76 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005198 structural molecule activity 13.28% (32/241) 4.8 0.0 0.0
GO:0032991 protein-containing complex 27.8% (67/241) 2.59 0.0 0.0
GO:0044391 ribosomal subunit 9.96% (24/241) 5.51 0.0 0.0
GO:0005575 cellular_component 54.36% (131/241) 1.44 0.0 0.0
GO:0003735 structural constituent of ribosome 10.37% (25/241) 5.16 0.0 0.0
GO:0005840 ribosome 9.96% (24/241) 5.33 0.0 0.0
GO:0015934 large ribosomal subunit 7.88% (19/241) 5.9 0.0 0.0
GO:0006412 translation 9.96% (24/241) 4.92 0.0 0.0
GO:0022625 cytosolic large ribosomal subunit 7.47% (18/241) 6.11 0.0 0.0
GO:0043604 amide biosynthetic process 10.79% (26/241) 4.52 0.0 0.0
GO:0043043 peptide biosynthetic process 9.96% (24/241) 4.8 0.0 0.0
GO:0043603 amide metabolic process 11.2% (27/241) 4.15 0.0 0.0
GO:0006518 peptide metabolic process 9.96% (24/241) 4.54 0.0 0.0
GO:0009059 macromolecule biosynthetic process 14.11% (34/241) 3.48 0.0 0.0
GO:1990904 ribonucleoprotein complex 12.03% (29/241) 3.81 0.0 0.0
GO:0043226 organelle 30.71% (74/241) 1.91 0.0 0.0
GO:0043229 intracellular organelle 30.71% (74/241) 1.91 0.0 0.0
GO:0044271 cellular nitrogen compound biosynthetic process 14.11% (34/241) 3.21 0.0 0.0
GO:0110165 cellular anatomical entity 44.4% (107/241) 1.33 0.0 0.0
GO:1901576 organic substance biosynthetic process 18.67% (45/241) 2.51 0.0 0.0
GO:0009058 biosynthetic process 18.67% (45/241) 2.44 0.0 0.0
GO:0006807 nitrogen compound metabolic process 34.85% (84/241) 1.53 0.0 0.0
GO:0044249 cellular biosynthetic process 17.43% (42/241) 2.53 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 12.03% (29/241) 3.28 0.0 0.0
GO:1901564 organonitrogen compound metabolic process 27.8% (67/241) 1.75 0.0 0.0
GO:0043170 macromolecule metabolic process 31.95% (77/241) 1.55 0.0 0.0
GO:0071704 organic substance metabolic process 38.59% (93/241) 1.34 0.0 0.0
GO:0008150 biological_process 54.77% (132/241) 0.98 0.0 0.0
GO:0009987 cellular process 42.32% (102/241) 1.2 0.0 0.0
GO:0008152 metabolic process 39.0% (94/241) 1.28 0.0 0.0
GO:0044238 primary metabolic process 36.51% (88/241) 1.34 0.0 0.0
GO:0019538 protein metabolic process 23.24% (56/241) 1.84 0.0 0.0
GO:0043228 non-membrane-bounded organelle 10.79% (26/241) 3.11 0.0 0.0
GO:0043232 intracellular non-membrane-bounded organelle 10.79% (26/241) 3.11 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 20.75% (50/241) 1.96 0.0 0.0
GO:0065003 protein-containing complex assembly 7.47% (18/241) 3.79 0.0 0.0
GO:0005634 nucleus 15.35% (37/241) 2.05 0.0 0.0
GO:0044237 cellular metabolic process 29.05% (70/241) 1.31 0.0 0.0
GO:0022607 cellular component assembly 7.47% (18/241) 3.21 0.0 0.0
GO:0070180 large ribosomal subunit rRNA binding 2.07% (5/241) 8.15 0.0 0.0
GO:0000786 nucleosome 2.9% (7/241) 6.17 0.0 0.0
GO:0043933 protein-containing complex organization 7.47% (18/241) 3.05 0.0 0.0
GO:0003674 molecular_function 56.43% (136/241) 0.67 0.0 0.0
GO:0043231 intracellular membrane-bounded organelle 19.92% (48/241) 1.51 0.0 0.0
GO:0043227 membrane-bounded organelle 19.92% (48/241) 1.49 0.0 0.0
GO:0022618 protein-RNA complex assembly 4.15% (10/241) 4.41 0.0 0.0
GO:0031492 nucleosomal DNA binding 2.07% (5/241) 7.58 0.0 0.0
GO:0071826 protein-RNA complex organization 4.15% (10/241) 4.37 0.0 0.0
GO:0045910 negative regulation of DNA recombination 2.07% (5/241) 7.01 0.0 0.0
GO:0006334 nucleosome assembly 2.49% (6/241) 5.99 0.0 0.0
GO:0000018 regulation of DNA recombination 2.07% (5/241) 6.74 0.0 0.0
GO:0034728 nucleosome organization 2.49% (6/241) 5.61 0.0 0.0
GO:0030527 structural constituent of chromatin 2.07% (5/241) 6.07 0.0 0.0
GO:1902494 catalytic complex 7.88% (19/241) 2.27 0.0 0.0
GO:0009057 macromolecule catabolic process 5.81% (14/241) 2.68 0.0 1e-06
GO:0051053 negative regulation of DNA metabolic process 2.07% (5/241) 5.68 0.0 1e-06
GO:0002181 cytoplasmic translation 2.07% (5/241) 5.57 0.0 2e-06
GO:0030261 chromosome condensation 2.07% (5/241) 5.54 0.0 2e-06
GO:0140513 nuclear protein-containing complex 7.05% (17/241) 2.24 0.0 3e-06
GO:0003676 nucleic acid binding 16.18% (39/241) 1.3 0.0 3e-06
GO:0031491 nucleosome binding 2.07% (5/241) 5.29 0.0 4e-06
GO:1901575 organic substance catabolic process 7.47% (18/241) 2.11 0.0 4e-06
GO:0065004 protein-DNA complex assembly 2.49% (6/241) 4.42 0.0 7e-06
GO:0051603 proteolysis involved in protein catabolic process 4.56% (11/241) 2.85 1e-06 8e-06
GO:0009056 catabolic process 7.47% (18/241) 2.04 1e-06 8e-06
GO:0022627 cytosolic small ribosomal subunit 2.07% (5/241) 5.0 1e-06 9e-06
GO:0071840 cellular component organization or biogenesis 9.54% (23/241) 1.69 1e-06 1.4e-05
GO:0005737 cytoplasm 9.96% (24/241) 1.63 1e-06 1.8e-05
GO:0005488 binding 36.1% (87/241) 0.68 1e-06 1.8e-05
GO:0019843 rRNA binding 2.07% (5/241) 4.65 2e-06 2.8e-05
GO:0032993 protein-DNA complex 2.9% (7/241) 3.62 2e-06 2.8e-05
GO:0044613 nuclear pore central transport channel 1.24% (3/241) 6.96 2e-06 2.8e-05
GO:0003723 RNA binding 7.88% (19/241) 1.84 2e-06 2.9e-05
GO:0016043 cellular component organization 8.71% (21/241) 1.72 2e-06 3e-05
GO:0019899 enzyme binding 3.32% (8/241) 3.27 2e-06 3e-05
GO:0015935 small ribosomal subunit 2.07% (5/241) 4.57 3e-06 3.3e-05
GO:0031490 chromatin DNA binding 2.07% (5/241) 4.56 3e-06 3.5e-05
GO:1901565 organonitrogen compound catabolic process 4.56% (11/241) 2.57 3e-06 4.1e-05
GO:0051052 regulation of DNA metabolic process 2.07% (5/241) 4.39 5e-06 6e-05
GO:0034402 recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex 0.83% (2/241) 8.82 9e-06 0.000103
GO:0044877 protein-containing complex binding 4.15% (10/241) 2.5 1.4e-05 0.000167
GO:0010605 negative regulation of macromolecule metabolic process 3.73% (9/241) 2.65 1.8e-05 0.000204
GO:0031324 negative regulation of cellular metabolic process 3.73% (9/241) 2.62 2e-05 0.000228
GO:0003682 chromatin binding 2.9% (7/241) 3.11 2.1e-05 0.00023
GO:0009892 negative regulation of metabolic process 3.73% (9/241) 2.62 2.1e-05 0.000232
GO:0005080 protein kinase C binding 0.83% (2/241) 8.2 2.2e-05 0.000237
GO:0019941 modification-dependent protein catabolic process 3.32% (8/241) 2.73 3.5e-05 0.000373
GO:0061695 transferase complex, transferring phosphorus-containing groups 2.9% (7/241) 2.97 3.9e-05 0.000412
GO:0050794 regulation of cellular process 11.62% (28/241) 1.2 3.9e-05 0.000416
GO:0000028 ribosomal small subunit assembly 1.24% (3/241) 5.51 4.4e-05 0.000457
GO:0043632 modification-dependent macromolecule catabolic process 3.32% (8/241) 2.67 4.6e-05 0.000476
GO:0006508 proteolysis 5.39% (13/241) 1.93 4.9e-05 0.000502
GO:0034654 nucleobase-containing compound biosynthetic process 4.15% (10/241) 2.28 5.3e-05 0.000535
GO:0051172 negative regulation of nitrogen compound metabolic process 2.49% (6/241) 3.21 5.5e-05 0.000545
GO:0045934 negative regulation of nucleobase-containing compound metabolic process 2.07% (5/241) 3.66 5.5e-05 0.000547
GO:0034655 nucleobase-containing compound catabolic process 2.9% (7/241) 2.85 6.5e-05 0.000633
GO:0071013 catalytic step 2 spliceosome 1.66% (4/241) 4.24 6.9e-05 0.000662
GO:0070647 protein modification by small protein conjugation or removal 4.15% (10/241) 2.22 7.4e-05 0.000712
GO:0006338 chromatin remodeling 2.49% (6/241) 3.13 7.7e-05 0.000731
GO:0006139 nucleobase-containing compound metabolic process 10.79% (26/241) 1.2 8e-05 0.000754
GO:0097159 organic cyclic compound binding 23.65% (57/241) 0.72 8.3e-05 0.000773
GO:0043687 post-translational protein modification 4.56% (11/241) 2.05 8.8e-05 0.000812
GO:0030130 clathrin coat of trans-Golgi network vesicle 0.83% (2/241) 7.15 9.4e-05 0.000828
GO:0030132 clathrin coat of coated pit 0.83% (2/241) 7.15 9.4e-05 0.000828
GO:0060255 regulation of macromolecule metabolic process 8.71% (21/241) 1.36 9.2e-05 0.00083
GO:0050789 regulation of biological process 11.62% (28/241) 1.13 9.1e-05 0.000832
GO:1901360 organic cyclic compound metabolic process 11.62% (28/241) 1.13 9.3e-05 0.000833
GO:0046483 heterocycle metabolic process 11.2% (27/241) 1.15 9.7e-05 0.000846
GO:0031323 regulation of cellular metabolic process 8.71% (21/241) 1.35 0.0001 0.000861
GO:0046700 heterocycle catabolic process 2.9% (7/241) 2.72 0.00011 0.000933
GO:0044270 cellular nitrogen compound catabolic process 2.9% (7/241) 2.72 0.00011 0.000933
GO:0006325 chromatin organization 2.49% (6/241) 3.0 0.000123 0.00103
GO:0065007 biological regulation 12.03% (29/241) 1.08 0.000126 0.001044
GO:0006725 cellular aromatic compound metabolic process 11.2% (27/241) 1.12 0.000141 0.001163
GO:0032774 RNA biosynthetic process 2.9% (7/241) 2.66 0.000147 0.001197
GO:0048523 negative regulation of cellular process 3.73% (9/241) 2.24 0.000149 0.001201
GO:0019222 regulation of metabolic process 8.71% (21/241) 1.3 0.000154 0.001234
GO:0010498 proteasomal protein catabolic process 2.49% (6/241) 2.93 0.000158 0.001259
GO:0048519 negative regulation of biological process 3.73% (9/241) 2.22 0.000169 0.001335
GO:0031325 positive regulation of cellular metabolic process 2.9% (7/241) 2.61 0.000181 0.001413
GO:0045544 gibberellin 20-oxidase activity 0.83% (2/241) 6.56 0.000218 0.001688
GO:0071004 U2-type prespliceosome 1.24% (3/241) 4.71 0.000226 0.00171
GO:0071010 prespliceosome 1.24% (3/241) 4.71 0.000226 0.00171
GO:0019439 aromatic compound catabolic process 2.9% (7/241) 2.55 0.000226 0.001737
GO:0055029 nuclear DNA-directed RNA polymerase complex 1.66% (4/241) 3.77 0.000236 0.001769
GO:0006090 pyruvate metabolic process 2.07% (5/241) 3.2 0.000243 0.00181
GO:1901361 organic cyclic compound catabolic process 2.9% (7/241) 2.53 0.000251 0.001837
GO:0030163 protein catabolic process 2.49% (6/241) 2.81 0.00025 0.001846
GO:0019900 kinase binding 1.24% (3/241) 4.64 0.00026 0.00189
GO:0003677 DNA binding 7.47% (18/241) 1.34 0.000331 0.002373
GO:1901362 organic cyclic compound biosynthetic process 4.56% (11/241) 1.83 0.000329 0.002376
GO:0004739 pyruvate dehydrogenase (acetyl-transferring) activity 0.83% (2/241) 6.2 0.000359 0.002529
GO:0004738 pyruvate dehydrogenase activity 0.83% (2/241) 6.2 0.000359 0.002529
GO:0048522 positive regulation of cellular process 2.9% (7/241) 2.43 0.000375 0.002627
GO:0018130 heterocycle biosynthetic process 4.15% (10/241) 1.92 0.00039 0.002713
GO:0070279 vitamin B6 binding 1.66% (4/241) 3.57 0.000398 0.002724
GO:0030170 pyridoxal phosphate binding 1.66% (4/241) 3.57 0.000398 0.002724
GO:0051173 positive regulation of nitrogen compound metabolic process 2.9% (7/241) 2.41 0.000412 0.002763
GO:0000428 DNA-directed RNA polymerase complex 1.66% (4/241) 3.56 0.00041 0.00277
GO:0071824 protein-DNA complex organization 2.49% (6/241) 2.68 0.000408 0.002773
GO:0005665 RNA polymerase II, core complex 1.24% (3/241) 4.4 0.000421 0.0028
GO:0009893 positive regulation of metabolic process 2.9% (7/241) 2.39 0.000448 0.002936
GO:0010604 positive regulation of macromolecule metabolic process 2.9% (7/241) 2.39 0.000446 0.002947
GO:1990234 transferase complex 3.73% (9/241) 2.01 0.000481 0.003134
GO:0009416 response to light stimulus 1.66% (4/241) 3.49 0.000488 0.003156
GO:0009791 post-embryonic development 1.24% (3/241) 4.32 0.000494 0.003172
GO:0006414 translational elongation 1.24% (3/241) 4.31 0.000509 0.003249
GO:0019438 aromatic compound biosynthetic process 4.15% (10/241) 1.84 0.000574 0.003641
GO:0090567 reproductive shoot system development 0.83% (2/241) 5.82 0.000599 0.003748
GO:0009908 flower development 0.83% (2/241) 5.82 0.000599 0.003748
GO:0098797 plasma membrane protein complex 1.24% (3/241) 4.21 0.000617 0.003834
GO:0030125 clathrin vesicle coat 0.83% (2/241) 5.78 0.000641 0.003852
GO:0016255 attachment of GPI anchor to protein 0.83% (2/241) 5.78 0.000641 0.003852
GO:0042765 GPI-anchor transamidase complex 0.83% (2/241) 5.78 0.000641 0.003852
GO:0030118 clathrin coat 0.83% (2/241) 5.78 0.000641 0.003852
GO:0008303 caspase complex 0.83% (2/241) 5.78 0.000641 0.003852
GO:0009314 response to radiation 1.66% (4/241) 3.38 0.000652 0.003897
GO:0051171 regulation of nitrogen compound metabolic process 7.05% (17/241) 1.29 0.000746 0.004426
GO:0016593 Cdc73/Paf1 complex 0.83% (2/241) 5.64 0.000773 0.004557
GO:0000245 spliceosomal complex assembly 0.83% (2/241) 5.63 0.000788 0.004619
GO:0030880 RNA polymerase complex 1.66% (4/241) 3.29 0.000817 0.004758
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process 2.07% (5/241) 2.81 0.000828 0.004763
GO:0072344 rescue of stalled ribosome 0.83% (2/241) 5.58 0.000835 0.004776
GO:0080090 regulation of primary metabolic process 7.05% (17/241) 1.27 0.000826 0.004783
GO:0019693 ribose phosphate metabolic process 2.49% (6/241) 2.46 0.000888 0.005049
GO:0019842 vitamin binding 1.66% (4/241) 3.25 0.000906 0.005087
GO:0006511 ubiquitin-dependent protein catabolic process 2.49% (6/241) 2.45 0.000905 0.005113
GO:0030955 potassium ion binding 0.83% (2/241) 5.49 0.00095 0.005242
GO:0004743 pyruvate kinase activity 0.83% (2/241) 5.49 0.00095 0.005242
GO:0031420 alkali metal ion binding 0.83% (2/241) 5.49 0.00095 0.005242
GO:0060560 developmental growth involved in morphogenesis 0.83% (2/241) 5.45 0.001002 0.005462
GO:0009826 unidimensional cell growth 0.83% (2/241) 5.45 0.001002 0.005462
GO:0051276 chromosome organization 2.49% (6/241) 2.42 0.001024 0.005519
GO:0097602 cullin family protein binding 0.83% (2/241) 5.44 0.001019 0.005525
GO:0036211 protein modification process 9.96% (24/241) 1.0 0.001037 0.005557
GO:0045944 positive regulation of transcription by RNA polymerase II 1.66% (4/241) 3.19 0.001068 0.005658
GO:0048518 positive regulation of biological process 2.9% (7/241) 2.17 0.001076 0.005668
GO:0045182 translation regulator activity 1.66% (4/241) 3.19 0.001064 0.005671
GO:0070646 protein modification by small protein removal 1.66% (4/241) 3.18 0.001093 0.005727
GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor 0.83% (2/241) 5.38 0.001108 0.005776
GO:0018193 peptidyl-amino acid modification 2.49% (6/241) 2.39 0.001134 0.005878
GO:0005684 U2-type spliceosomal complex 1.24% (3/241) 3.9 0.001145 0.005903
GO:0031369 translation initiation factor binding 0.83% (2/241) 5.31 0.001221 0.006156
GO:0009686 gibberellin biosynthetic process 0.83% (2/241) 5.31 0.001221 0.006156
GO:0005515 protein binding 13.28% (32/241) 0.83 0.001211 0.006176
GO:0006351 DNA-templated transcription 2.07% (5/241) 2.68 0.001209 0.006199
GO:0006163 purine nucleotide metabolic process 2.49% (6/241) 2.34 0.001331 0.006677
GO:0005689 U12-type spliceosomal complex 0.83% (2/241) 5.23 0.001358 0.006776
GO:0048589 developmental growth 0.83% (2/241) 5.22 0.001378 0.00684
GO:1905369 endopeptidase complex 0.83% (2/241) 5.19 0.00144 0.007071
GO:1901135 carbohydrate derivative metabolic process 3.32% (8/241) 1.92 0.001433 0.007075
GO:0055086 nucleobase-containing small molecule metabolic process 2.9% (7/241) 2.09 0.001479 0.007225
GO:0030532 small nuclear ribonucleoprotein complex 1.24% (3/241) 3.73 0.001589 0.007644
GO:0051641 cellular localization 4.15% (10/241) 1.65 0.001584 0.007658
GO:0008446 GDP-mannose 4,6-dehydratase activity 0.41% (1/241) 9.28 0.001603 0.007673
GO:0097525 spliceosomal snRNP complex 1.24% (3/241) 3.74 0.001581 0.007684
GO:0140535 intracellular protein-containing complex 3.32% (8/241) 1.89 0.001648 0.007808
GO:1901136 carbohydrate derivative catabolic process 1.66% (4/241) 3.02 0.001645 0.007834
GO:0006086 acetyl-CoA biosynthetic process from pyruvate 0.83% (2/241) 5.06 0.001699 0.008007
GO:0032790 ribosome disassembly 0.83% (2/241) 5.06 0.001721 0.008072
GO:0016049 cell growth 0.83% (2/241) 5.03 0.00179 0.008351
GO:0072521 purine-containing compound metabolic process 2.49% (6/241) 2.25 0.001817 0.008438
GO:0005686 U2 snRNP 0.83% (2/241) 4.93 0.002051 0.009477
GO:0120114 Sm-like protein family complex 1.24% (3/241) 3.6 0.00207 0.009518
GO:0061631 ubiquitin conjugating enzyme activity 0.83% (2/241) 4.89 0.00215 0.009839
GO:0019901 protein kinase binding 0.83% (2/241) 4.87 0.002201 0.010021
GO:0003690 double-stranded DNA binding 2.9% (7/241) 1.98 0.00223 0.010104
GO:0051254 positive regulation of RNA metabolic process 2.07% (5/241) 2.47 0.002281 0.010239
GO:0040007 growth 0.83% (2/241) 4.85 0.002278 0.010271
GO:0030159 signaling receptor complex adaptor activity 0.41% (1/241) 8.7 0.002404 0.010636
GO:0010387 COP9 signalosome assembly 0.41% (1/241) 8.7 0.002404 0.010636
GO:0009150 purine ribonucleotide metabolic process 2.07% (5/241) 2.46 0.002383 0.010645
GO:0022613 ribonucleoprotein complex biogenesis 1.24% (3/241) 3.52 0.002418 0.01065
GO:0043022 ribosome binding 1.24% (3/241) 3.51 0.00246 0.010784
GO:0010557 positive regulation of macromolecule biosynthetic process 2.07% (5/241) 2.43 0.002563 0.011028
GO:0009891 positive regulation of biosynthetic process 2.07% (5/241) 2.43 0.002563 0.011028
GO:0031328 positive regulation of cellular biosynthetic process 2.07% (5/241) 2.43 0.002563 0.011028
GO:0016070 RNA metabolic process 5.81% (14/241) 1.26 0.002537 0.011069
GO:0005829 cytosol 4.15% (10/241) 1.55 0.002588 0.011086
GO:0140096 catalytic activity, acting on a protein 10.37% (25/241) 0.88 0.002625 0.011194
GO:0010562 positive regulation of phosphorus metabolic process 0.83% (2/241) 4.69 0.002821 0.011557
GO:0042327 positive regulation of phosphorylation 0.83% (2/241) 4.69 0.002821 0.011557
GO:0045937 positive regulation of phosphate metabolic process 0.83% (2/241) 4.69 0.002821 0.011557
GO:0035591 signaling adaptor activity 0.41% (1/241) 8.48 0.002804 0.011638
GO:0060213 positive regulation of nuclear-transcribed mRNA poly(A) tail shortening 0.41% (1/241) 8.48 0.002804 0.011638
GO:0060211 regulation of nuclear-transcribed mRNA poly(A) tail shortening 0.41% (1/241) 8.48 0.002804 0.011638
GO:0045948 positive regulation of translational initiation 0.41% (1/241) 8.48 0.002804 0.011638
GO:0001934 positive regulation of protein phosphorylation 0.83% (2/241) 4.71 0.002765 0.011681
GO:0061650 ubiquitin-like protein conjugating enzyme activity 0.83% (2/241) 4.71 0.002765 0.011681
GO:0045935 positive regulation of nucleobase-containing compound metabolic process 2.07% (5/241) 2.39 0.002884 0.011764
GO:0009685 gibberellin metabolic process 0.83% (2/241) 4.65 0.002995 0.012163
GO:0000993 RNA polymerase II complex binding 0.83% (2/241) 4.64 0.003025 0.01223
GO:0019752 carboxylic acid metabolic process 4.15% (10/241) 1.51 0.003102 0.012488
GO:0004795 threonine synthase activity 0.41% (1/241) 8.28 0.003204 0.012574
GO:0000389 mRNA 3'-splice site recognition 0.41% (1/241) 8.28 0.003204 0.012574
GO:0006082 organic acid metabolic process 4.15% (10/241) 1.51 0.003182 0.012596
GO:0009117 nucleotide metabolic process 2.49% (6/241) 2.09 0.003144 0.012603
GO:0048367 shoot system development 0.83% (2/241) 4.6 0.003174 0.012616
GO:0043436 oxoacid metabolic process 4.15% (10/241) 1.51 0.003165 0.012632
GO:0006753 nucleoside phosphate metabolic process 2.49% (6/241) 2.08 0.003304 0.012912
GO:0005681 spliceosomal complex 1.66% (4/241) 2.73 0.003368 0.013107
GO:0048608 reproductive structure development 0.83% (2/241) 4.56 0.003389 0.013136
GO:0032968 positive regulation of transcription elongation by RNA polymerase II 0.83% (2/241) 4.52 0.003546 0.013689
GO:0016102 diterpenoid biosynthetic process 0.83% (2/241) 4.5 0.003675 0.014069
GO:0044248 cellular catabolic process 3.32% (8/241) 1.7 0.003661 0.014074
GO:0034243 regulation of transcription elongation by RNA polymerase II 0.83% (2/241) 4.47 0.003805 0.01451
GO:0033565 ESCRT-0 complex 0.41% (1/241) 7.96 0.004003 0.015081
GO:0019774 proteasome core complex, beta-subunit complex 0.41% (1/241) 7.96 0.004003 0.015081
GO:0019219 regulation of nucleobase-containing compound metabolic process 5.81% (14/241) 1.19 0.003978 0.015108
GO:0090304 nucleic acid metabolic process 7.88% (19/241) 0.98 0.00409 0.015347
GO:0048731 system development 0.83% (2/241) 4.4 0.004175 0.015603
GO:0009259 ribonucleotide metabolic process 2.07% (5/241) 2.25 0.004319 0.016013
GO:0097526 spliceosomal tri-snRNP complex 0.83% (2/241) 4.38 0.004314 0.016057
GO:0033290 eukaryotic 48S preinitiation complex 0.41% (1/241) 7.82 0.004403 0.016259
GO:0043175 RNA polymerase core enzyme binding 0.83% (2/241) 4.35 0.00449 0.016515
GO:0006085 acetyl-CoA biosynthetic process 0.83% (2/241) 4.33 0.004597 0.016844
GO:0000902 cell morphogenesis 0.83% (2/241) 4.3 0.004815 0.017371
GO:0009756 carbohydrate mediated signaling 0.41% (1/241) 7.7 0.004802 0.017391
GO:0010182 sugar mediated signaling pathway 0.41% (1/241) 7.7 0.004802 0.017391
GO:0042802 identical protein binding 0.83% (2/241) 4.3 0.004778 0.01744
GO:0009134 nucleoside diphosphate catabolic process 1.24% (3/241) 3.13 0.005095 0.017635
GO:0009191 ribonucleoside diphosphate catabolic process 1.24% (3/241) 3.13 0.005095 0.017635
GO:0071616 acyl-CoA biosynthetic process 0.83% (2/241) 4.28 0.004926 0.017635
GO:0035384 thioester biosynthetic process 0.83% (2/241) 4.28 0.004926 0.017635
GO:0043021 ribonucleoprotein complex binding 1.24% (3/241) 3.13 0.005128 0.017684
GO:0046031 ADP metabolic process 1.24% (3/241) 3.14 0.005078 0.017708
GO:0009137 purine nucleoside diphosphate catabolic process 1.24% (3/241) 3.14 0.005078 0.017708
GO:0009135 purine nucleoside diphosphate metabolic process 1.24% (3/241) 3.14 0.005078 0.017708
GO:0046032 ADP catabolic process 1.24% (3/241) 3.14 0.005078 0.017708
GO:0009179 purine ribonucleoside diphosphate metabolic process 1.24% (3/241) 3.14 0.005078 0.017708
GO:0006096 glycolytic process 1.24% (3/241) 3.14 0.005078 0.017708
GO:0009181 purine ribonucleoside diphosphate catabolic process 1.24% (3/241) 3.14 0.005078 0.017708
GO:0019364 pyridine nucleotide catabolic process 1.24% (3/241) 3.12 0.005228 0.017831
GO:0008234 cysteine-type peptidase activity 1.66% (4/241) 2.55 0.005194 0.017846
GO:0043412 macromolecule modification 9.96% (24/241) 0.82 0.005214 0.017849
GO:0000291 nuclear-transcribed mRNA catabolic process, exonucleolytic 0.83% (2/241) 4.22 0.005303 0.018024
GO:0072526 pyridine-containing compound catabolic process 1.24% (3/241) 3.11 0.005379 0.018217
GO:0000956 nuclear-transcribed mRNA catabolic process 1.24% (3/241) 3.08 0.005621 0.018966
GO:0006367 transcription initiation at RNA polymerase II promoter 0.83% (2/241) 4.17 0.005694 0.019143
GO:0070063 RNA polymerase binding 0.83% (2/241) 4.15 0.005814 0.019475
GO:0141047 molecular tag activity 0.83% (2/241) 4.12 0.006097 0.020138
GO:0031386 protein tag activity 0.83% (2/241) 4.12 0.006097 0.020138
GO:0009261 ribonucleotide catabolic process 1.24% (3/241) 3.04 0.006068 0.020184
GO:0009154 purine ribonucleotide catabolic process 1.24% (3/241) 3.04 0.00605 0.020195
GO:0042273 ribosomal large subunit biogenesis 0.83% (2/241) 4.1 0.006221 0.020473
GO:0016101 diterpenoid metabolic process 0.83% (2/241) 4.08 0.006387 0.020947
GO:0006195 purine nucleotide catabolic process 1.24% (3/241) 3.01 0.006479 0.021175
GO:0009185 ribonucleoside diphosphate metabolic process 1.24% (3/241) 3.0 0.006555 0.02135
GO:0009132 nucleoside diphosphate metabolic process 1.24% (3/241) 2.99 0.006651 0.021588
GO:0004660 protein farnesyltransferase activity 0.41% (1/241) 7.2 0.006796 0.021757
GO:0005965 protein farnesyltransferase complex 0.41% (1/241) 7.2 0.006796 0.021757
GO:0018343 protein farnesylation 0.41% (1/241) 7.2 0.006796 0.021757
GO:0019637 organophosphate metabolic process 3.32% (8/241) 1.55 0.006821 0.021763
GO:0009628 response to abiotic stimulus 1.66% (4/241) 2.43 0.006862 0.021819
GO:0009166 nucleotide catabolic process 1.24% (3/241) 2.99 0.006749 0.021828
GO:1901292 nucleoside phosphate catabolic process 1.24% (3/241) 2.96 0.007125 0.022579
GO:0051247 positive regulation of protein metabolic process 1.24% (3/241) 2.94 0.007431 0.022929
GO:0031401 positive regulation of protein modification process 0.83% (2/241) 3.98 0.007382 0.02293
GO:0000027 ribosomal large subunit assembly 0.83% (2/241) 3.98 0.007382 0.02293
GO:0098796 membrane protein complex 2.49% (6/241) 1.83 0.007411 0.022944
GO:0045893 positive regulation of DNA-templated transcription 1.66% (4/241) 2.4 0.007345 0.022965
GO:1902680 positive regulation of RNA biosynthetic process 1.66% (4/241) 2.4 0.007345 0.022965
GO:0018105 peptidyl-serine phosphorylation 1.24% (3/241) 2.93 0.007535 0.023097
GO:0018209 peptidyl-serine modification 1.24% (3/241) 2.93 0.007535 0.023097
GO:0001098 basal transcription machinery binding 0.83% (2/241) 3.98 0.007338 0.023097
GO:0001099 basal RNA polymerase II transcription machinery binding 0.83% (2/241) 3.98 0.007338 0.023097
GO:0044272 sulfur compound biosynthetic process 1.24% (3/241) 2.92 0.007639 0.023341
GO:0000247 C-8 sterol isomerase activity 0.41% (1/241) 6.96 0.007991 0.023644
GO:0004769 steroid delta-isomerase activity 0.41% (1/241) 6.96 0.007991 0.023644
GO:0047750 cholestenol delta-isomerase activity 0.41% (1/241) 6.96 0.007991 0.023644
GO:0070993 translation preinitiation complex 0.41% (1/241) 6.96 0.007991 0.023644
GO:0071821 FANCM-MHF complex 0.41% (1/241) 6.96 0.007991 0.023644
GO:0009653 anatomical structure morphogenesis 0.83% (2/241) 3.91 0.00802 0.023658
GO:0070727 cellular macromolecule localization 2.9% (7/241) 1.64 0.008084 0.02377
GO:0006996 organelle organization 3.73% (9/241) 1.4 0.007873 0.023899
GO:0046907 intracellular transport 2.9% (7/241) 1.64 0.00785 0.023906
GO:0006084 acetyl-CoA metabolic process 0.83% (2/241) 3.92 0.007928 0.023911
GO:0033036 macromolecule localization 2.9% (7/241) 1.63 0.008166 0.023936
GO:0032446 protein modification by small protein conjugation 2.49% (6/241) 1.81 0.007923 0.023972
GO:0008104 protein localization 2.9% (7/241) 1.64 0.007988 0.024016
GO:0019783 ubiquitin-like protein peptidase activity 1.24% (3/241) 2.88 0.008241 0.02408
GO:0004662 CAAX-protein geranylgeranyltransferase activity 0.41% (1/241) 6.89 0.008388 0.02436
GO:0005953 CAAX-protein geranylgeranyltransferase complex 0.41% (1/241) 6.89 0.008388 0.02436
GO:0006898 receptor-mediated endocytosis 0.83% (2/241) 3.87 0.008539 0.02472
GO:0032786 positive regulation of DNA-templated transcription, elongation 0.83% (2/241) 3.85 0.008682 0.025059
GO:0006446 regulation of translational initiation 0.41% (1/241) 6.82 0.008786 0.025203
GO:1990726 Lsm1-7-Pat1 complex 0.41% (1/241) 6.82 0.008786 0.025203
GO:0072523 purine-containing compound catabolic process 1.24% (3/241) 2.84 0.008823 0.025232
GO:0030276 clathrin binding 0.83% (2/241) 3.82 0.009071 0.025863
GO:0051649 establishment of localization in cell 2.9% (7/241) 1.59 0.009342 0.026553
GO:1905368 peptidase complex 0.83% (2/241) 3.75 0.009923 0.028036
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process 0.83% (2/241) 3.75 0.009923 0.028036
GO:0046034 ATP metabolic process 1.24% (3/241) 2.77 0.010084 0.028404
GO:0006402 mRNA catabolic process 1.24% (3/241) 2.77 0.010133 0.028458
GO:0033866 nucleoside bisphosphate biosynthetic process 0.83% (2/241) 3.72 0.010388 0.028828
GO:0034030 ribonucleoside bisphosphate biosynthetic process 0.83% (2/241) 3.72 0.010388 0.028828
GO:0034033 purine nucleoside bisphosphate biosynthetic process 0.83% (2/241) 3.72 0.010388 0.028828
GO:0002182 cytoplasmic translational elongation 0.41% (1/241) 6.58 0.010375 0.029051
GO:0000287 magnesium ion binding 1.24% (3/241) 2.74 0.010738 0.029713
GO:0008023 transcription elongation factor complex 0.83% (2/241) 3.68 0.010969 0.030261
GO:1903008 organelle disassembly 0.83% (2/241) 3.67 0.011076 0.030467
GO:0006164 purine nucleotide biosynthetic process 1.24% (3/241) 2.7 0.011604 0.031826
GO:0009205 purine ribonucleoside triphosphate metabolic process 1.24% (3/241) 2.69 0.011685 0.031954
GO:0005688 U6 snRNP 0.41% (1/241) 6.38 0.011962 0.032428
GO:0098799 outer mitochondrial membrane protein complex 0.41% (1/241) 6.38 0.011962 0.032428
GO:0005742 mitochondrial outer membrane translocase complex 0.41% (1/241) 6.38 0.011962 0.032428
GO:0009144 purine nucleoside triphosphate metabolic process 1.24% (3/241) 2.68 0.012065 0.032614
GO:0051246 regulation of protein metabolic process 1.66% (4/241) 2.17 0.012701 0.034235
GO:0032784 regulation of DNA-templated transcription elongation 0.83% (2/241) 3.56 0.012738 0.034236
GO:0004830 tryptophan-tRNA ligase activity 0.41% (1/241) 6.24 0.01315 0.035042
GO:0071020 post-spliceosomal complex 0.41% (1/241) 6.24 0.01315 0.035042
GO:0006436 tryptophanyl-tRNA aminoacylation 0.41% (1/241) 6.24 0.01315 0.035042
GO:0005654 nucleoplasm 0.83% (2/241) 3.53 0.013256 0.035225
GO:0044281 small molecule metabolic process 4.98% (12/241) 1.07 0.013476 0.035709
GO:0000350 generation of catalytic spliceosome for second transesterification step 0.41% (1/241) 6.2 0.013546 0.035792
GO:0016071 mRNA metabolic process 2.07% (5/241) 1.85 0.013598 0.035827
GO:0004430 1-phosphatidylinositol 4-kinase activity 0.41% (1/241) 6.15 0.013942 0.036427
GO:0031510 SUMO activating enzyme complex 0.41% (1/241) 6.15 0.013942 0.036427
GO:0019948 SUMO activating enzyme activity 0.41% (1/241) 6.15 0.013942 0.036427
GO:0031625 ubiquitin protein ligase binding 0.83% (2/241) 3.49 0.014081 0.036689
GO:0072522 purine-containing compound biosynthetic process 1.24% (3/241) 2.59 0.014224 0.036756
GO:0010857 calcium-dependent protein kinase activity 0.83% (2/241) 3.48 0.014201 0.036796
GO:0009931 calcium-dependent protein serine/threonine kinase activity 0.83% (2/241) 3.48 0.014201 0.036796
GO:0004683 calmodulin-dependent protein kinase activity 0.83% (2/241) 3.47 0.014441 0.037214
GO:0044389 ubiquitin-like protein ligase binding 0.83% (2/241) 3.45 0.014744 0.037891
GO:0009070 serine family amino acid biosynthetic process 0.83% (2/241) 3.42 0.015359 0.039148
GO:0032787 monocarboxylic acid metabolic process 2.07% (5/241) 1.8 0.015285 0.039174
GO:0046390 ribose phosphate biosynthetic process 1.24% (3/241) 2.54 0.015334 0.039191
GO:0032051 clathrin light chain binding 0.41% (1/241) 6.0 0.015523 0.039352
GO:0071439 clathrin complex 0.41% (1/241) 6.0 0.015523 0.039352
GO:0032501 multicellular organismal process 1.24% (3/241) 2.53 0.01581 0.039972
GO:0006401 RNA catabolic process 1.24% (3/241) 2.53 0.015874 0.040026
GO:0009299 mRNA transcription 0.41% (1/241) 5.96 0.015918 0.040028
GO:0051382 kinetochore assembly 0.41% (1/241) 5.89 0.016707 0.041567
GO:0019264 glycine biosynthetic process from serine 0.41% (1/241) 5.89 0.016707 0.041567
GO:0070905 serine binding 0.41% (1/241) 5.89 0.016707 0.041567
GO:0004372 glycine hydroxymethyltransferase activity 0.41% (1/241) 5.89 0.016707 0.041567
GO:0050815 phosphoserine residue binding 0.41% (1/241) 5.86 0.017101 0.041992
GO:0071618 lysophosphatidylethanolamine acyltransferase activity 0.41% (1/241) 5.86 0.017101 0.041992
GO:0051383 kinetochore organization 0.41% (1/241) 5.86 0.017101 0.041992
GO:1990269 RNA polymerase II C-terminal domain phosphoserine binding 0.41% (1/241) 5.86 0.017101 0.041992
GO:0099122 RNA polymerase II C-terminal domain binding 0.41% (1/241) 5.86 0.017101 0.041992
GO:0046391 5-phosphoribose 1-diphosphate metabolic process 0.41% (1/241) 5.82 0.017495 0.042078
GO:0006015 5-phosphoribose 1-diphosphate biosynthetic process 0.41% (1/241) 5.82 0.017495 0.042078
GO:0004749 ribose phosphate diphosphokinase activity 0.41% (1/241) 5.82 0.017495 0.042078
GO:0002189 ribose phosphate diphosphokinase complex 0.41% (1/241) 5.82 0.017495 0.042078
GO:0051219 phosphoprotein binding 0.41% (1/241) 5.82 0.017495 0.042078
GO:0045309 protein phosphorylated amino acid binding 0.41% (1/241) 5.82 0.017495 0.042078
GO:0003006 developmental process involved in reproduction 0.83% (2/241) 3.32 0.017397 0.042606
GO:0009199 ribonucleoside triphosphate metabolic process 1.24% (3/241) 2.47 0.01749 0.042724
GO:0010629 negative regulation of gene expression 1.66% (4/241) 2.01 0.01812 0.043468
GO:0000338 protein deneddylation 0.41% (1/241) 5.76 0.018283 0.043749
GO:0004197 cysteine-type endopeptidase activity 0.83% (2/241) 3.28 0.018389 0.043892
GO:0009141 nucleoside triphosphate metabolic process 1.24% (3/241) 2.43 0.018911 0.045022
GO:0006637 acyl-CoA metabolic process 0.83% (2/241) 3.25 0.019133 0.045319
GO:0035383 thioester metabolic process 0.83% (2/241) 3.25 0.019133 0.045319
GO:0005794 Golgi apparatus 1.66% (4/241) 1.98 0.01956 0.046215
GO:0016860 intramolecular oxidoreductase activity 0.83% (2/241) 3.23 0.019612 0.046221
GO:0000307 cyclin-dependent protein kinase holoenzyme complex 0.83% (2/241) 3.23 0.01975 0.046429
GO:0006565 L-serine catabolic process 0.41% (1/241) 5.64 0.019857 0.046565
GO:0000932 P-body 0.83% (2/241) 3.22 0.020026 0.046845
GO:0005850 eukaryotic translation initiation factor 2 complex 0.41% (1/241) 5.61 0.02025 0.047017
GO:0004661 protein geranylgeranyltransferase activity 0.41% (1/241) 5.61 0.02025 0.047017
GO:0046434 organophosphate catabolic process 1.24% (3/241) 2.39 0.020173 0.047071
GO:0046496 nicotinamide nucleotide metabolic process 1.24% (3/241) 2.37 0.020877 0.048352
GO:0019362 pyridine nucleotide metabolic process 1.24% (3/241) 2.37 0.021102 0.048634
GO:0009069 serine family amino acid metabolic process 0.83% (2/241) 3.18 0.02108 0.048701
GO:1903311 regulation of mRNA metabolic process 0.83% (2/241) 3.17 0.021293 0.048953
GO:0044843 cell cycle G1/S phase transition 0.41% (1/241) 5.5 0.021821 0.049923
GO:0000082 G1/S transition of mitotic cell cycle 0.41% (1/241) 5.5 0.021821 0.049923
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (241) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms