Coexpression cluster: Cluster_763 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003924 GTPase activity 10.17% (6/59) 4.87 0.0 2.3e-05
GO:0004794 L-threonine ammonia-lyase activity 3.39% (2/59) 11.31 0.0 4.6e-05
GO:0018117 protein adenylylation 3.39% (2/59) 10.61 1e-06 5.2e-05
GO:0070733 AMPylase activity 3.39% (2/59) 10.61 1e-06 5.2e-05
GO:0018175 protein nucleotidylation 3.39% (2/59) 10.61 1e-06 5.2e-05
GO:0003941 L-serine ammonia-lyase activity 3.39% (2/59) 9.61 3e-06 0.000179
GO:0009097 isoleucine biosynthetic process 3.39% (2/59) 8.56 1.4e-05 0.000364
GO:0006549 isoleucine metabolic process 3.39% (2/59) 8.56 1.4e-05 0.000364
GO:0016817 hydrolase activity, acting on acid anhydrides 11.86% (7/59) 3.29 8e-06 0.000377
GO:0006566 threonine metabolic process 3.39% (2/59) 8.64 1.2e-05 0.000383
GO:0006565 L-serine catabolic process 3.39% (2/59) 8.67 1.2e-05 0.000405
GO:0009068 aspartate family amino acid catabolic process 3.39% (2/59) 8.7 1.1e-05 0.000432
GO:0006567 threonine catabolic process 3.39% (2/59) 8.7 1.1e-05 0.000432
GO:0009071 serine family amino acid catabolic process 3.39% (2/59) 7.9 3.4e-05 0.000841
GO:0017111 ribonucleoside triphosphate phosphatase activity 10.17% (6/59) 3.2 4.9e-05 0.001147
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 10.17% (6/59) 3.08 7.8e-05 0.001439
GO:0032991 protein-containing complex 18.64% (11/59) 2.01 7.4e-05 0.001445
GO:0016462 pyrophosphatase activity 10.17% (6/59) 3.11 7.1e-05 0.001465
GO:0009082 branched-chain amino acid biosynthetic process 3.39% (2/59) 7.41 6.7e-05 0.001469
GO:0016841 ammonia-lyase activity 3.39% (2/59) 7.09 0.000105 0.001836
GO:0031976 plastid thylakoid 3.39% (2/59) 6.57 0.000213 0.00339
GO:0009534 chloroplast thylakoid 3.39% (2/59) 6.57 0.000213 0.00339
GO:0003746 translation elongation factor activity 3.39% (2/59) 6.3 0.000309 0.004704
GO:0006563 L-serine metabolic process 3.39% (2/59) 6.27 0.000324 0.004719
GO:0044249 cellular biosynthetic process 13.56% (8/59) 2.17 0.000382 0.005342
GO:0070566 adenylyltransferase activity 3.39% (2/59) 6.01 0.000462 0.006224
GO:0016840 carbon-nitrogen lyase activity 3.39% (2/59) 5.96 0.000498 0.006453
GO:0098876 vesicle-mediated transport to the plasma membrane 3.39% (2/59) 5.75 0.000663 0.00725
GO:1901576 organic substance biosynthetic process 13.56% (8/59) 2.05 0.000662 0.007478
GO:0006414 translational elongation 3.39% (2/59) 5.75 0.000659 0.007693
GO:0008652 amino acid biosynthetic process 5.08% (3/59) 4.19 0.000619 0.007738
GO:0009579 thylakoid 3.39% (2/59) 5.76 0.000652 0.007875
GO:0009081 branched-chain amino acid metabolic process 3.39% (2/59) 5.57 0.000847 0.008981
GO:0009058 biosynthetic process 13.56% (8/59) 1.97 0.000926 0.009533
GO:0044283 small molecule biosynthetic process 6.78% (4/59) 3.14 0.00113 0.011305
GO:0005525 GTP binding 5.08% (3/59) 3.81 0.00132 0.012484
GO:0032561 guanyl ribonucleotide binding 5.08% (3/59) 3.81 0.00132 0.012484
GO:0009069 serine family amino acid metabolic process 3.39% (2/59) 5.21 0.001392 0.01282
GO:0019001 guanyl nucleotide binding 5.08% (3/59) 3.77 0.001437 0.012897
GO:0009066 aspartate family amino acid metabolic process 3.39% (2/59) 5.08 0.001645 0.014395
GO:0120114 Sm-like protein family complex 3.39% (2/59) 5.05 0.001732 0.014436
GO:1990904 ribonucleoprotein complex 6.78% (4/59) 2.98 0.0017 0.014508
GO:0035266 meristem growth 1.69% (1/59) 8.99 0.001962 0.015605
GO:0043022 ribosome binding 3.39% (2/59) 4.96 0.001954 0.015901
GO:0004399 histidinol dehydrogenase activity 1.69% (1/59) 8.79 0.002256 0.016113
GO:0071922 regulation of cohesin loading 1.69% (1/59) 8.79 0.002256 0.016113
GO:1905634 regulation of protein localization to chromatin 1.69% (1/59) 8.79 0.002256 0.016113
GO:0007063 regulation of sister chromatid cohesion 1.69% (1/59) 8.79 0.002256 0.016113
GO:0048280 vesicle fusion with Golgi apparatus 1.69% (1/59) 8.79 0.002256 0.016113
GO:0006887 exocytosis 3.39% (2/59) 4.8 0.002408 0.016858
GO:0045025 mitochondrial degradosome 1.69% (1/59) 8.51 0.002745 0.018479
GO:1901606 alpha-amino acid catabolic process 3.39% (2/59) 4.71 0.002721 0.01867
GO:0009063 amino acid catabolic process 3.39% (2/59) 4.61 0.003109 0.02053
GO:0032940 secretion by cell 3.39% (2/59) 4.57 0.003316 0.021101
GO:0043021 ribonucleoprotein complex binding 3.39% (2/59) 4.58 0.003271 0.021201
GO:0042255 ribosome assembly 1.69% (1/59) 8.07 0.003724 0.021725
GO:0046903 secretion 3.39% (2/59) 4.51 0.003568 0.021909
GO:0000811 GINS complex 1.69% (1/59) 8.03 0.003822 0.02193
GO:0046394 carboxylic acid biosynthetic process 5.08% (3/59) 3.29 0.003706 0.021984
GO:0016053 organic acid biosynthetic process 5.08% (3/59) 3.29 0.003706 0.021984
GO:0042256 cytosolic ribosome assembly 1.69% (1/59) 8.14 0.003529 0.022054
GO:0008135 translation factor activity, RNA binding 3.39% (2/59) 4.4 0.004156 0.023091
GO:0090079 translation regulator activity, nucleic acid binding 3.39% (2/59) 4.4 0.004156 0.023091
GO:0032880 regulation of protein localization 1.69% (1/59) 7.82 0.004409 0.02411
GO:0140352 export from cell 3.39% (2/59) 4.34 0.004523 0.024353
GO:0005769 early endosome 1.69% (1/59) 7.76 0.004604 0.024417
GO:0034715 pICln-Sm protein complex 1.69% (1/59) 7.61 0.005093 0.026604
GO:0045182 translation regulator activity 3.39% (2/59) 4.22 0.005289 0.026827
GO:0055037 recycling endosome 1.69% (1/59) 7.56 0.005288 0.027219
GO:0072546 EMC complex 1.69% (1/59) 7.48 0.005581 0.027906
GO:0022618 protein-RNA complex assembly 3.39% (2/59) 4.12 0.006031 0.029729
GO:1901566 organonitrogen compound biosynthetic process 6.78% (4/59) 2.45 0.006295 0.03018
GO:0071826 protein-RNA complex organization 3.39% (2/59) 4.08 0.006393 0.030237
GO:0043014 alpha-tubulin binding 1.69% (1/59) 7.31 0.006265 0.030453
GO:0009059 macromolecule biosynthetic process 6.78% (4/59) 2.42 0.006664 0.030687
GO:0034975 protein folding in endoplasmic reticulum 1.69% (1/59) 7.23 0.006655 0.031056
GO:0051668 localization within membrane 3.39% (2/59) 3.98 0.007276 0.033071
GO:0031261 DNA replication preinitiation complex 1.69% (1/59) 7.07 0.007435 0.033361
GO:0000965 mitochondrial RNA 3'-end processing 1.69% (1/59) 6.97 0.007922 0.034659
GO:0051641 cellular localization 6.78% (4/59) 2.36 0.007859 0.03482
GO:0071203 WASH complex 1.69% (1/59) 6.73 0.009382 0.040541
GO:0043015 gamma-tubulin binding 1.69% (1/59) 6.59 0.010355 0.041183
GO:1901607 alpha-amino acid biosynthetic process 3.39% (2/59) 3.72 0.010244 0.041213
GO:0000105 histidine biosynthetic process 1.69% (1/59) 6.61 0.01016 0.04135
GO:0006547 histidine metabolic process 1.69% (1/59) 6.61 0.01016 0.04135
GO:0060341 regulation of cellular localization 1.69% (1/59) 6.64 0.009966 0.041524
GO:0005681 spliceosomal complex 3.39% (2/59) 3.76 0.009769 0.041698
GO:0005829 cytosol 6.78% (4/59) 2.26 0.009923 0.041845
GO:0016054 organic acid catabolic process 3.39% (2/59) 3.66 0.011041 0.042465
GO:0046395 carboxylic acid catabolic process 3.39% (2/59) 3.66 0.011041 0.042465
GO:0006520 amino acid metabolic process 5.08% (3/59) 2.72 0.010813 0.042522
GO:2000762 regulation of phenylpropanoid metabolic process 1.69% (1/59) 6.46 0.011326 0.043088
GO:0032456 endocytic recycling 1.69% (1/59) 6.43 0.01152 0.043355
GO:0140513 nuclear protein-containing complex 6.78% (4/59) 2.18 0.01174 0.043714
GO:0006376 mRNA splice site recognition 1.69% (1/59) 6.34 0.012297 0.044369
GO:0016192 vesicle-mediated transport 5.08% (3/59) 2.63 0.012696 0.044435
GO:0043455 regulation of secondary metabolic process 1.69% (1/59) 6.35 0.0122 0.044477
GO:0030662 coated vesicle membrane 1.69% (1/59) 6.3 0.012587 0.044501
GO:0012507 ER to Golgi transport vesicle membrane 1.69% (1/59) 6.3 0.012587 0.044501
GO:0022607 cellular component assembly 5.08% (3/59) 2.66 0.012106 0.044603
GO:0048589 developmental growth 1.69% (1/59) 6.25 0.013072 0.044855
GO:0030658 transport vesicle membrane 1.69% (1/59) 6.26 0.012975 0.044964
GO:0140053 mitochondrial gene expression 1.69% (1/59) 6.05 0.015009 0.04864
GO:0034314 Arp2/3 complex-mediated actin nucleation 1.69% (1/59) 6.05 0.015009 0.04864
GO:0010467 gene expression 1.69% (1/59) 6.05 0.015009 0.04864
GO:0000963 mitochondrial RNA processing 1.69% (1/59) 6.11 0.014331 0.048699
GO:0045292 mRNA cis splicing, via spliceosome 1.69% (1/59) 6.06 0.014912 0.049707
GO:0048193 Golgi vesicle transport 3.39% (2/59) 3.41 0.015491 0.04974
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (59) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms