Coexpression cluster: Cluster_771 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:2000904 regulation of starch metabolic process 4.23% (3/71) 9.93 0.0 1e-06
GO:0043489 RNA stabilization 4.23% (3/71) 9.21 0.0 2e-06
GO:0005840 ribosome 8.45% (6/71) 5.09 0.0 2e-06
GO:0043036 starch grain 4.23% (3/71) 9.27 0.0 3e-06
GO:0032881 regulation of polysaccharide metabolic process 4.23% (3/71) 8.8 0.0 3e-06
GO:0003735 structural constituent of ribosome 8.45% (6/71) 4.86 0.0 4e-06
GO:0006412 translation 8.45% (6/71) 4.69 0.0 6e-06
GO:1902369 negative regulation of RNA catabolic process 4.23% (3/71) 8.27 0.0 6e-06
GO:0009536 plastid 9.86% (7/71) 3.99 0.0 8e-06
GO:0005982 starch metabolic process 4.23% (3/71) 7.81 0.0 8e-06
GO:0043043 peptide biosynthetic process 8.45% (6/71) 4.56 0.0 8e-06
GO:0031330 negative regulation of cellular catabolic process 4.23% (3/71) 7.86 0.0 8e-06
GO:0006109 regulation of carbohydrate metabolic process 4.23% (3/71) 7.9 0.0 8e-06
GO:0009507 chloroplast 9.86% (7/71) 4.03 0.0 8e-06
GO:0009895 negative regulation of catabolic process 4.23% (3/71) 7.74 0.0 9e-06
GO:0006518 peptide metabolic process 8.45% (6/71) 4.31 1e-06 1.3e-05
GO:0005198 structural molecule activity 8.45% (6/71) 4.15 1e-06 2e-05
GO:0043604 amide biosynthetic process 8.45% (6/71) 4.17 1e-06 2.1e-05
GO:2001070 starch binding 4.23% (3/71) 7.21 1e-06 2.1e-05
GO:0009523 photosystem II 4.23% (3/71) 6.94 2e-06 3.4e-05
GO:0043228 non-membrane-bounded organelle 11.27% (8/71) 3.17 3e-06 4.1e-05
GO:0043232 intracellular non-membrane-bounded organelle 11.27% (8/71) 3.17 3e-06 4.3e-05
GO:1901566 organonitrogen compound biosynthetic process 11.27% (8/71) 3.18 3e-06 4.3e-05
GO:0043603 amide metabolic process 8.45% (6/71) 3.75 6e-06 7.8e-05
GO:0019265 glycine biosynthetic process, by transamination of glyoxylate 2.82% (2/71) 8.96 8e-06 8.9e-05
GO:0004760 serine-pyruvate transaminase activity 2.82% (2/71) 8.96 8e-06 8.9e-05
GO:0043487 regulation of RNA stability 4.23% (3/71) 6.27 9e-06 0.000101
GO:0009532 plastid stroma 5.63% (4/71) 4.91 1.1e-05 0.000104
GO:0009570 chloroplast stroma 5.63% (4/71) 4.91 1.1e-05 0.000104
GO:0048564 photosystem I assembly 2.82% (2/71) 8.76 1e-05 0.000109
GO:0009521 photosystem 4.23% (3/71) 6.19 1.1e-05 0.000111
GO:0015979 photosynthesis 4.23% (3/71) 5.79 2.4e-05 0.000227
GO:0030246 carbohydrate binding 7.04% (5/71) 3.86 2.6e-05 0.00024
GO:0110165 cellular anatomical entity 38.03% (27/71) 1.11 4e-05 0.000353
GO:0044249 cellular biosynthetic process 14.08% (10/71) 2.22 5.3e-05 0.000429
GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity 2.82% (2/71) 7.59 5.2e-05 0.000436
GO:0047938 glucose-6-phosphate 1-epimerase activity 2.82% (2/71) 7.59 5.2e-05 0.000436
GO:0008453 alanine-glyoxylate transaminase activity 2.82% (2/71) 7.52 5.7e-05 0.000452
GO:0031329 regulation of cellular catabolic process 4.23% (3/71) 5.35 6e-05 0.000463
GO:0051253 negative regulation of RNA metabolic process 4.23% (3/71) 5.1 9.9e-05 0.000746
GO:1901576 organic substance biosynthetic process 14.08% (10/71) 2.1 0.000106 0.000773
GO:0006545 glycine biosynthetic process 2.82% (2/71) 7.0 0.000118 0.000842
GO:0005575 cellular_component 39.44% (28/71) 0.98 0.000131 0.000912
GO:0009058 biosynthetic process 14.08% (10/71) 2.03 0.000161 0.001049
GO:0043226 organelle 22.54% (16/71) 1.47 0.000158 0.001053
GO:0043229 intracellular organelle 22.54% (16/71) 1.47 0.000158 0.001076
GO:0006544 glycine metabolic process 2.82% (2/71) 6.66 0.000188 0.001202
GO:0009654 photosystem II oxygen evolving complex 2.82% (2/71) 6.64 0.000195 0.00122
GO:0010027 thylakoid membrane organization 2.82% (2/71) 6.5 0.000236 0.001388
GO:0009668 plastid membrane organization 2.82% (2/71) 6.5 0.000236 0.001388
GO:0045934 negative regulation of nucleobase-containing compound metabolic process 4.23% (3/71) 4.69 0.00023 0.001405
GO:0009767 photosynthetic electron transport chain 2.82% (2/71) 6.47 0.000246 0.00142
GO:0030247 polysaccharide binding 4.23% (3/71) 4.59 0.000281 0.001588
GO:0009059 macromolecule biosynthetic process 8.45% (6/71) 2.74 0.000288 0.001597
GO:0009894 regulation of catabolic process 4.23% (3/71) 4.45 0.00037 0.002018
GO:0090391 granum assembly 1.41% (1/71) 11.05 0.000473 0.002531
GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives 2.82% (2/71) 5.85 0.000576 0.00303
GO:0008150 biological_process 46.48% (33/71) 0.74 0.000614 0.003176
GO:0019898 extrinsic component of membrane 2.82% (2/71) 5.78 0.00064 0.003253
GO:0044271 cellular nitrogen compound biosynthetic process 8.45% (6/71) 2.47 0.00076 0.003737
GO:0016854 racemase and epimerase activity 2.82% (2/71) 5.65 0.000755 0.003775
GO:0003723 RNA binding 9.86% (7/71) 2.16 0.000976 0.004646
GO:0051172 negative regulation of nitrogen compound metabolic process 4.23% (3/71) 3.98 0.000961 0.004651
GO:0010608 post-transcriptional regulation of gene expression 4.23% (3/71) 3.85 0.001234 0.005782
GO:0044042 glucan metabolic process 4.23% (3/71) 3.84 0.001262 0.005824
GO:0009070 serine family amino acid biosynthetic process 2.82% (2/71) 5.18 0.001439 0.006542
GO:0009069 serine family amino acid metabolic process 2.82% (2/71) 4.94 0.002007 0.008986
GO:0008483 transaminase activity 2.82% (2/71) 4.83 0.002332 0.010139
GO:0016769 transferase activity, transferring nitrogenous groups 2.82% (2/71) 4.83 0.002332 0.010139
GO:0009055 electron transfer activity 2.82% (2/71) 4.75 0.002599 0.01114
GO:0010346 shoot axis formation 1.41% (1/71) 8.35 0.003067 0.011503
GO:1905393 plant organ formation 1.41% (1/71) 8.35 0.003067 0.011503
GO:0010223 secondary shoot formation 1.41% (1/71) 8.35 0.003067 0.011503
GO:0005854 nascent polypeptide-associated complex 1.41% (1/71) 8.4 0.00295 0.011643
GO:0022900 electron transport chain 2.82% (2/71) 4.65 0.002948 0.011793
GO:0051484 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process 1.41% (1/71) 8.46 0.002832 0.011799
GO:0030604 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity 1.41% (1/71) 8.46 0.002832 0.011799
GO:0008152 metabolic process 29.58% (21/71) 0.88 0.003062 0.01193
GO:0065008 regulation of biological quality 4.23% (3/71) 3.41 0.002946 0.011943
GO:0009658 chloroplast organization 2.82% (2/71) 4.66 0.00294 0.012081
GO:0005976 polysaccharide metabolic process 4.23% (3/71) 3.35 0.003263 0.012084
GO:0009657 plastid organization 2.82% (2/71) 4.57 0.003309 0.012106
GO:0048646 anatomical structure formation involved in morphogenesis 1.41% (1/71) 8.0 0.003892 0.014066
GO:0001763 morphogenesis of a branching structure 1.41% (1/71) 7.96 0.004009 0.014319
GO:1990204 oxidoreductase complex 2.82% (2/71) 4.39 0.004189 0.014785
GO:0005777 peroxisome 2.82% (2/71) 4.37 0.004321 0.014901
GO:0005975 carbohydrate metabolic process 7.04% (5/71) 2.24 0.004292 0.014972
GO:1901600 strigolactone metabolic process 1.41% (1/71) 7.76 0.004598 0.015498
GO:1901601 strigolactone biosynthetic process 1.41% (1/71) 7.76 0.004598 0.015498
GO:0080090 regulation of primary metabolic process 9.86% (7/71) 1.76 0.00471 0.015699
GO:1901336 lactone biosynthetic process 1.41% (1/71) 7.52 0.005421 0.01787
GO:0016106 sesquiterpenoid biosynthetic process 1.41% (1/71) 7.49 0.005538 0.018059
GO:0016853 isomerase activity 4.23% (3/71) 3.05 0.005905 0.019049
GO:0006714 sesquiterpenoid metabolic process 1.41% (1/71) 7.24 0.006595 0.021049
GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway 1.41% (1/71) 7.14 0.007065 0.02231
GO:0009987 cellular process 30.99% (22/71) 0.75 0.007348 0.022962
GO:0003729 mRNA binding 4.23% (3/71) 2.91 0.007664 0.023462
GO:0030042 actin filament depolymerization 1.41% (1/71) 7.02 0.007651 0.023664
GO:0009368 endopeptidase Clp complex 1.41% (1/71) 6.88 0.008472 0.025672
GO:0042579 microbody 2.82% (2/71) 3.85 0.008653 0.025959
GO:0010605 negative regulation of macromolecule metabolic process 4.23% (3/71) 2.82 0.008962 0.026619
GO:0031324 negative regulation of cellular metabolic process 4.23% (3/71) 2.8 0.009359 0.027258
GO:0070402 NADPH binding 1.41% (1/71) 6.74 0.009292 0.027328
GO:0009892 negative regulation of metabolic process 4.23% (3/71) 2.79 0.009498 0.027398
GO:1901334 lactone metabolic process 1.41% (1/71) 6.65 0.009877 0.028219
GO:0008299 isoprenoid biosynthetic process 2.82% (2/71) 3.71 0.010374 0.029359
GO:0060255 regulation of macromolecule metabolic process 9.86% (7/71) 1.54 0.010472 0.029361
GO:0016043 cellular component organization 8.45% (6/71) 1.68 0.011334 0.031483
GO:0019222 regulation of metabolic process 9.86% (7/71) 1.48 0.012679 0.034897
GO:0098796 membrane protein complex 4.23% (3/71) 2.6 0.013702 0.03737
GO:0051117 ATPase binding 1.41% (1/71) 6.1 0.01443 0.038309
GO:0009240 isopentenyl diphosphate biosynthetic process 1.41% (1/71) 6.1 0.01443 0.038309
GO:0046490 isopentenyl diphosphate metabolic process 1.41% (1/71) 6.1 0.01443 0.038309
GO:1901607 alpha-amino acid biosynthetic process 2.82% (2/71) 3.45 0.01458 0.038368
GO:0019682 glyceraldehyde-3-phosphate metabolic process 1.41% (1/71) 6.05 0.015012 0.039161
GO:0008652 amino acid biosynthetic process 2.82% (2/71) 3.34 0.016877 0.043648
GO:0061024 membrane organization 2.82% (2/71) 3.3 0.017817 0.045685
GO:1901259 chloroplast rRNA processing 1.41% (1/71) 5.71 0.018962 0.046628
GO:0048523 negative regulation of cellular process 4.23% (3/71) 2.42 0.018833 0.046693
GO:0071840 cellular component organization or biogenesis 8.45% (6/71) 1.52 0.018445 0.046894
GO:0006720 isoprenoid metabolic process 2.82% (2/71) 3.26 0.018798 0.046996
GO:0071704 organic substance metabolic process 25.35% (18/71) 0.73 0.018749 0.047266
GO:0022607 cellular component assembly 4.23% (3/71) 2.39 0.019832 0.047596
GO:0008154 actin polymerization or depolymerization 1.41% (1/71) 5.65 0.019773 0.047838
GO:0048519 negative regulation of biological process 4.23% (3/71) 2.4 0.019725 0.04811
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (71) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms