Coexpression cluster: Cluster_817 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0042721 TIM22 mitochondrial import inner membrane insertion complex 4.11% (3/73) 9.69 0.0 3e-06
GO:0045039 protein insertion into mitochondrial inner membrane 4.11% (3/73) 9.07 0.0 6e-06
GO:0007007 inner mitochondrial membrane organization 4.11% (3/73) 7.71 0.0 2.2e-05
GO:0007006 mitochondrial membrane organization 4.11% (3/73) 7.65 1e-06 2.3e-05
GO:0045036 protein targeting to chloroplast 4.11% (3/73) 7.72 0.0 2.4e-05
GO:0043226 organelle 28.77% (21/73) 1.82 0.0 2.5e-05
GO:0005575 cellular_component 46.58% (34/73) 1.22 0.0 2.5e-05
GO:0007005 mitochondrion organization 5.48% (4/73) 6.1 0.0 2.6e-05
GO:0090151 establishment of protein localization to mitochondrial membrane 4.11% (3/73) 7.8 0.0 2.8e-05
GO:0043229 intracellular organelle 28.77% (21/73) 1.82 0.0 3.3e-05
GO:0032991 protein-containing complex 20.55% (15/73) 2.15 1e-06 4.3e-05
GO:0022884 macromolecule transmembrane transporter activity 4.11% (3/73) 7.12 2e-06 4.9e-05
GO:0140318 protein transporter activity 4.11% (3/73) 7.12 2e-06 5.2e-05
GO:0008320 protein transmembrane transporter activity 4.11% (3/73) 7.12 2e-06 5.2e-05
GO:0072596 establishment of protein localization to chloroplast 4.11% (3/73) 6.87 3e-06 7.2e-05
GO:0005634 nucleus 17.81% (13/73) 2.27 3e-06 7.6e-05
GO:0072598 protein localization to chloroplast 4.11% (3/73) 6.64 4e-06 0.000108
GO:0018205 peptidyl-lysine modification 5.48% (4/73) 5.15 6e-06 0.000138
GO:0072655 establishment of protein localization to mitochondrion 4.11% (3/73) 6.37 7e-06 0.000161
GO:0070585 protein localization to mitochondrion 4.11% (3/73) 6.37 7e-06 0.000161
GO:0110165 cellular anatomical entity 39.73% (29/73) 1.17 8e-06 0.000164
GO:1990841 promoter-specific chromatin binding 2.74% (2/73) 8.8 1e-05 0.000185
GO:0043231 intracellular membrane-bounded organelle 23.29% (17/73) 1.73 9e-06 0.000187
GO:0043227 membrane-bounded organelle 23.29% (17/73) 1.72 1e-05 0.000189
GO:0071782 endoplasmic reticulum tubular network 2.74% (2/73) 8.69 1.1e-05 0.000191
GO:0098827 endoplasmic reticulum subcompartment 2.74% (2/73) 8.69 1.1e-05 0.000191
GO:0051983 regulation of chromosome segregation 4.11% (3/73) 6.09 1.3e-05 0.000212
GO:0016570 histone modification 5.48% (4/73) 4.77 1.6e-05 0.000245
GO:0071786 endoplasmic reticulum tubular network organization 2.74% (2/73) 8.33 1.8e-05 0.00028
GO:0016560 protein import into peroxisome matrix, docking 2.74% (2/73) 7.61 5e-05 0.000738
GO:1990429 peroxisomal importomer complex 2.74% (2/73) 7.52 5.8e-05 0.00082
GO:0006839 mitochondrial transport 4.11% (3/73) 5.23 7.7e-05 0.001058
GO:0098800 inner mitochondrial membrane protein complex 4.11% (3/73) 5.16 8.9e-05 0.00119
GO:0090150 establishment of protein localization to membrane 4.11% (3/73) 5.1 9.9e-05 0.001282
GO:0003682 chromatin binding 5.48% (4/73) 4.03 0.000115 0.001437
GO:0009526 plastid envelope 4.11% (3/73) 4.86 0.000162 0.001876
GO:0009941 chloroplast envelope 4.11% (3/73) 4.86 0.000162 0.001876
GO:0043687 post-translational protein modification 8.22% (6/73) 2.9 0.000159 0.001941
GO:0008150 biological_process 47.95% (35/73) 0.79 0.000202 0.002166
GO:0003723 RNA binding 10.96% (8/73) 2.31 0.000208 0.002177
GO:0070461 SAGA-type complex 2.74% (2/73) 6.61 0.000202 0.002212
GO:0000124 SAGA complex 2.74% (2/73) 6.63 0.000197 0.002215
GO:0072657 protein localization to membrane 4.11% (3/73) 4.7 0.000228 0.002324
GO:0097250 mitochondrial respirasome assembly 1.37% (1/73) 12.01 0.000243 0.002424
GO:0003676 nucleic acid binding 19.18% (14/73) 1.54 0.000257 0.002511
GO:0006605 protein targeting 4.11% (3/73) 4.56 0.000302 0.002882
GO:0098798 mitochondrial protein-containing complex 4.11% (3/73) 4.5 0.000336 0.003008
GO:0031967 organelle envelope 4.11% (3/73) 4.51 0.000333 0.003047
GO:0031975 envelope 4.11% (3/73) 4.51 0.000333 0.003047
GO:0009987 cellular process 35.62% (26/73) 0.95 0.000383 0.003359
GO:0043604 amide biosynthetic process 5.48% (4/73) 3.54 0.000408 0.003513
GO:0005198 structural molecule activity 5.48% (4/73) 3.52 0.000435 0.003534
GO:1990904 ribonucleoprotein complex 6.85% (5/73) 3.0 0.000432 0.003577
GO:0018193 peptidyl-amino acid modification 5.48% (4/73) 3.53 0.000426 0.003599
GO:0007029 endoplasmic reticulum organization 2.74% (2/73) 6.02 0.000458 0.003659
GO:0033036 macromolecule localization 6.85% (5/73) 2.87 0.000638 0.003782
GO:0070727 cellular macromolecule localization 6.85% (5/73) 2.87 0.000632 0.003801
GO:0004055 argininosuccinate synthase activity 1.37% (1/73) 10.69 0.000607 0.003808
GO:0000053 argininosuccinate metabolic process 1.37% (1/73) 10.69 0.000607 0.003808
GO:0032447 protein urmylation 1.37% (1/73) 10.69 0.000607 0.003808
GO:0000050 urea cycle 1.37% (1/73) 10.69 0.000607 0.003808
GO:0008104 protein localization 6.85% (5/73) 2.88 0.000625 0.003814
GO:0016251 RNA polymerase II general transcription initiation factor activity 2.74% (2/73) 5.8 0.000621 0.003839
GO:0016573 histone acetylation 2.74% (2/73) 5.87 0.00056 0.003842
GO:0018393 internal peptidyl-lysine acetylation 2.74% (2/73) 5.87 0.00056 0.003842
GO:0018394 peptidyl-lysine acetylation 2.74% (2/73) 5.87 0.00056 0.003842
GO:0006475 internal protein amino acid acetylation 2.74% (2/73) 5.87 0.00056 0.003842
GO:0044391 ribosomal subunit 4.11% (3/73) 4.23 0.00058 0.003917
GO:0006996 organelle organization 8.22% (6/73) 2.54 0.000602 0.004005
GO:0034968 histone lysine methylation 2.74% (2/73) 5.88 0.000556 0.00407
GO:0005669 transcription factor TFIID complex 2.74% (2/73) 5.92 0.000521 0.004087
GO:0051668 localization within membrane 4.11% (3/73) 4.26 0.00055 0.004092
GO:0006367 transcription initiation at RNA polymerase II promoter 2.74% (2/73) 5.89 0.000544 0.004121
GO:0010564 regulation of cell cycle process 4.11% (3/73) 4.27 0.000541 0.00417
GO:0046488 phosphatidylinositol metabolic process 4.11% (3/73) 4.08 0.000779 0.004444
GO:0046030 inositol trisphosphate phosphatase activity 2.74% (2/73) 5.63 0.000779 0.004501
GO:0004445 inositol-polyphosphate 5-phosphatase activity 2.74% (2/73) 5.63 0.000779 0.004501
GO:0034485 phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity 2.74% (2/73) 5.58 0.000831 0.004678
GO:0044271 cellular nitrogen compound biosynthetic process 8.22% (6/73) 2.43 0.00088 0.004771
GO:0034594 phosphatidylinositol trisphosphate phosphatase activity 2.74% (2/73) 5.54 0.00088 0.004827
GO:0140223 general transcription initiation factor activity 2.74% (2/73) 5.55 0.00087 0.004834
GO:0052745 inositol phosphate phosphatase activity 2.74% (2/73) 5.51 0.000919 0.004922
GO:1905368 peptidase complex 2.74% (2/73) 5.48 0.000965 0.005105
GO:0031903 microbody membrane 2.74% (2/73) 5.46 0.000991 0.005119
GO:0005778 peroxisomal membrane 2.74% (2/73) 5.46 0.000991 0.005119
GO:0106019 phosphatidylinositol-4,5-bisphosphate phosphatase activity 2.74% (2/73) 5.39 0.001082 0.005396
GO:0004439 phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity 2.74% (2/73) 5.39 0.001082 0.005396
GO:0018022 peptidyl-lysine methylation 2.74% (2/73) 5.4 0.001076 0.005494
GO:0006473 protein acetylation 2.74% (2/73) 5.35 0.001154 0.00569
GO:0035859 Seh1-associated complex 1.37% (1/73) 9.69 0.001214 0.005731
GO:1903432 regulation of TORC1 signaling 1.37% (1/73) 9.69 0.001214 0.005731
GO:1904263 positive regulation of TORC1 signaling 1.37% (1/73) 9.69 0.001214 0.005731
GO:0061024 membrane organization 4.11% (3/73) 3.85 0.00125 0.005775
GO:0016571 histone methylation 2.74% (2/73) 5.29 0.001239 0.005788
GO:0043603 amide metabolic process 5.48% (4/73) 3.12 0.001205 0.005876
GO:0032008 positive regulation of TOR signaling 1.37% (1/73) 9.55 0.001335 0.005922
GO:0032006 regulation of TOR signaling 1.37% (1/73) 9.55 0.001335 0.005922
GO:0003735 structural constituent of ribosome 4.11% (3/73) 3.82 0.001302 0.005955
GO:1990351 transporter complex 2.74% (2/73) 5.24 0.001334 0.006037
GO:0042054 histone methyltransferase activity 2.74% (2/73) 5.18 0.001451 0.006369
GO:0006650 glycerophospholipid metabolic process 4.11% (3/73) 3.76 0.001482 0.006441
GO:0051726 regulation of cell cycle 4.11% (3/73) 3.74 0.001543 0.00664
GO:0019627 urea metabolic process 1.37% (1/73) 9.31 0.001578 0.006726
GO:0034595 phosphatidylinositol phosphate 5-phosphatase activity 2.74% (2/73) 5.11 0.001598 0.006747
GO:0000123 histone acetyltransferase complex 2.74% (2/73) 5.05 0.001726 0.007014
GO:0019843 rRNA binding 2.74% (2/73) 5.05 0.001726 0.007014
GO:0034593 phosphatidylinositol bisphosphate phosphatase activity 2.74% (2/73) 5.06 0.001712 0.00709
GO:0033185 dolichol-phosphate-mannose synthase complex 1.37% (1/73) 9.2 0.001699 0.007105
GO:0006412 translation 4.11% (3/73) 3.65 0.001849 0.007448
GO:1902533 positive regulation of intracellular signal transduction 1.37% (1/73) 9.01 0.001942 0.00775
GO:0046856 phosphatidylinositol dephosphorylation 2.74% (2/73) 4.92 0.002045 0.008017
GO:0046839 phospholipid dephosphorylation 2.74% (2/73) 4.92 0.002045 0.008017
GO:0044877 protein-containing complex binding 5.48% (4/73) 2.9 0.0021 0.008157
GO:0046486 glycerolipid metabolic process 4.11% (3/73) 3.55 0.002221 0.008551
GO:0052866 phosphatidylinositol phosphate phosphatase activity 2.74% (2/73) 4.85 0.00225 0.008587
GO:0009059 macromolecule biosynthetic process 6.85% (5/73) 2.44 0.002366 0.008656
GO:0043043 peptide biosynthetic process 4.11% (3/73) 3.52 0.00236 0.008707
GO:0072594 establishment of protein localization to organelle 4.11% (3/73) 3.52 0.002357 0.008769
GO:0031248 protein acetyltransferase complex 2.74% (2/73) 4.82 0.002351 0.008822
GO:1902493 acetyltransferase complex 2.74% (2/73) 4.82 0.002351 0.008822
GO:0051179 localization 12.33% (9/73) 1.61 0.002625 0.009524
GO:0033365 protein localization to organelle 4.11% (3/73) 3.41 0.002944 0.010256
GO:0043543 protein acylation 2.74% (2/73) 4.66 0.002926 0.010278
GO:0006352 DNA-templated transcription initiation 2.74% (2/73) 4.66 0.002918 0.010329
GO:0022625 cytosolic large ribosomal subunit 2.74% (2/73) 4.66 0.002909 0.010382
GO:0051641 cellular localization 6.85% (5/73) 2.37 0.002905 0.010453
GO:0008213 protein alkylation 2.74% (2/73) 4.52 0.003542 0.012147
GO:0006479 protein methylation 2.74% (2/73) 4.52 0.003542 0.012147
GO:0006518 peptide metabolic process 4.11% (3/73) 3.27 0.003876 0.013189
GO:0004860 protein kinase inhibitor activity 1.37% (1/73) 7.96 0.004001 0.013511
GO:0015934 large ribosomal subunit 2.74% (2/73) 4.38 0.004274 0.014324
GO:0071941 nitrogen cycle metabolic process 1.37% (1/73) 7.8 0.004485 0.014804
GO:0090575 RNA polymerase II transcription regulator complex 2.74% (2/73) 4.35 0.004465 0.01485
GO:0036080 purine nucleotide-sugar transmembrane transporter activity 1.37% (1/73) 7.76 0.004606 0.014868
GO:0005457 GDP-fucose transmembrane transporter activity 1.37% (1/73) 7.76 0.004606 0.014868
GO:0005777 peroxisome 2.74% (2/73) 4.33 0.004562 0.014945
GO:0006644 phospholipid metabolic process 4.11% (3/73) 3.16 0.00479 0.015239
GO:0140513 nuclear protein-containing complex 6.85% (5/73) 2.2 0.004783 0.015326
GO:0008276 protein methyltransferase activity 2.74% (2/73) 4.27 0.004958 0.01566
GO:0034641 cellular nitrogen compound metabolic process 13.7% (10/73) 1.36 0.005383 0.01688
GO:0034227 tRNA thio-modification 1.37% (1/73) 7.45 0.005694 0.017727
GO:0003677 DNA binding 9.59% (7/73) 1.7 0.00574 0.017746
GO:0071840 cellular component organization or biogenesis 9.59% (7/73) 1.7 0.005787 0.017766
GO:0031501 mannosyltransferase complex 1.37% (1/73) 7.33 0.006177 0.018831
GO:0044249 cellular biosynthetic process 9.59% (7/73) 1.67 0.006469 0.019584
GO:0019210 kinase inhibitor activity 1.37% (1/73) 7.15 0.007022 0.021113
GO:0006886 intracellular protein transport 4.11% (3/73) 2.94 0.007251 0.021655
GO:0034457 Mpp10 complex 1.37% (1/73) 7.01 0.007745 0.02282
GO:0005488 binding 35.62% (26/73) 0.66 0.007735 0.022944
GO:0034198 cellular response to amino acid starvation 1.37% (1/73) 6.96 0.007986 0.023219
GO:1990928 response to amino acid starvation 1.37% (1/73) 6.96 0.007986 0.023219
GO:0008097 5S rRNA binding 1.37% (1/73) 6.9 0.008348 0.02411
GO:0016070 RNA metabolic process 8.22% (6/73) 1.76 0.008693 0.024942
GO:0042579 microbody 2.74% (2/73) 3.81 0.009127 0.02536
GO:0033673 negative regulation of kinase activity 1.37% (1/73) 6.78 0.009071 0.025363
GO:0001933 negative regulation of protein phosphorylation 1.37% (1/73) 6.78 0.009071 0.025363
GO:0006469 negative regulation of protein kinase activity 1.37% (1/73) 6.78 0.009071 0.025363
GO:0042326 negative regulation of phosphorylation 1.37% (1/73) 6.78 0.009071 0.025363
GO:0140993 histone modifying activity 2.74% (2/73) 3.76 0.009776 0.026992
GO:0010647 positive regulation of cell communication 1.37% (1/73) 6.61 0.010154 0.027346
GO:0009967 positive regulation of signal transduction 1.37% (1/73) 6.61 0.010154 0.027346
GO:0023056 positive regulation of signaling 1.37% (1/73) 6.61 0.010154 0.027346
GO:1901576 organic substance biosynthetic process 9.59% (7/73) 1.55 0.010011 0.027466
GO:0030258 lipid modification 2.74% (2/73) 3.69 0.010779 0.028854
GO:0031080 nuclear pore outer ring 1.37% (1/73) 6.42 0.011596 0.030852
GO:0006396 RNA processing 5.48% (4/73) 2.19 0.011853 0.031346
GO:0006526 arginine biosynthetic process 1.37% (1/73) 6.35 0.012196 0.03206
GO:0045936 negative regulation of phosphate metabolic process 1.37% (1/73) 6.29 0.012676 0.032734
GO:0010563 negative regulation of phosphorus metabolic process 1.37% (1/73) 6.29 0.012676 0.032734
GO:0042274 ribosomal small subunit biogenesis 1.37% (1/73) 6.31 0.012556 0.03281
GO:0089701 U2AF complex 1.37% (1/73) 6.27 0.012916 0.032966
GO:0009058 biosynthetic process 9.59% (7/73) 1.47 0.013025 0.033051
GO:0016043 cellular component organization 8.22% (6/73) 1.64 0.012889 0.033091
GO:1901566 organonitrogen compound biosynthetic process 5.48% (4/73) 2.14 0.01314 0.033153
GO:0043228 non-membrane-bounded organelle 5.48% (4/73) 2.13 0.0134 0.033424
GO:0015031 protein transport 4.11% (3/73) 2.6 0.013518 0.033529
GO:0043232 intracellular non-membrane-bounded organelle 5.48% (4/73) 2.13 0.013394 0.0336
GO:0030684 preribosome 2.74% (2/73) 3.48 0.014099 0.034773
GO:0005840 ribosome 2.74% (2/73) 3.47 0.014371 0.035245
GO:0030628 pre-mRNA 3'-splice site binding 1.37% (1/73) 6.1 0.014474 0.0353
GO:0050789 regulation of biological process 12.33% (9/73) 1.22 0.014818 0.035742
GO:0098796 membrane protein complex 4.11% (3/73) 2.56 0.014759 0.035796
GO:0034470 ncRNA processing 4.11% (3/73) 2.51 0.015935 0.038227
GO:0003690 double-stranded DNA binding 4.11% (3/73) 2.48 0.016831 0.03994
GO:0006525 arginine metabolic process 1.37% (1/73) 5.89 0.016747 0.039955
GO:0005667 transcription regulator complex 2.74% (2/73) 3.33 0.017249 0.040711
GO:0051348 negative regulation of transferase activity 1.37% (1/73) 5.84 0.017344 0.040716
GO:0031984 organelle subcompartment 2.74% (2/73) 3.3 0.017803 0.041573
GO:0003674 molecular_function 47.95% (35/73) 0.44 0.018063 0.041955
GO:0016311 dephosphorylation 2.74% (2/73) 3.27 0.018487 0.042715
GO:0006810 transport 9.59% (7/73) 1.37 0.018661 0.042891
GO:0019538 protein metabolic process 13.7% (10/73) 1.08 0.019308 0.044148
GO:0043414 macromolecule methylation 2.74% (2/73) 3.2 0.020328 0.046001
GO:0019901 protein kinase binding 1.37% (1/73) 5.6 0.020444 0.046024
GO:0031400 negative regulation of protein modification process 1.37% (1/73) 5.61 0.020324 0.04623
GO:0003725 double-stranded RNA binding 1.37% (1/73) 5.56 0.02092 0.046856
GO:0000460 maturation of 5.8S rRNA 1.37% (1/73) 5.56 0.021039 0.046883
GO:0065007 biological regulation 12.33% (9/73) 1.12 0.0224 0.049666
GO:0072350 tricarboxylic acid metabolic process 1.37% (1/73) 5.45 0.022584 0.049821
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (73) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms