Coexpression cluster: Cluster_319 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0004791 thioredoxin-disulfide reductase (NADP) activity 5.38% (5/93) 8.89 0.0 0.0
GO:0016668 oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor 5.38% (5/93) 7.66 0.0 0.0
GO:0031262 Ndc80 complex 4.3% (4/93) 8.73 0.0 0.0
GO:1905202 methylcrotonoyl-CoA carboxylase complex 3.23% (3/93) 10.54 0.0 0.0
GO:0016667 oxidoreductase activity, acting on a sulfur group of donors 5.38% (5/93) 5.88 0.0 2e-06
GO:0007059 chromosome segregation 4.3% (4/93) 6.56 0.0 7e-06
GO:0004485 methylcrotonoyl-CoA carboxylase activity 3.23% (3/93) 8.38 0.0 8e-06
GO:0006552 leucine catabolic process 3.23% (3/93) 8.24 0.0 8e-06
GO:0015811 L-cystine transport 2.15% (2/93) 10.34 1e-06 2.7e-05
GO:0000101 sulfur amino acid transport 2.15% (2/93) 10.34 1e-06 2.7e-05
GO:0000099 sulfur amino acid transmembrane transporter activity 2.15% (2/93) 10.34 1e-06 2.7e-05
GO:0015184 L-cystine transmembrane transporter activity 2.15% (2/93) 10.34 1e-06 2.7e-05
GO:0006551 leucine metabolic process 3.23% (3/93) 7.5 1e-06 3.2e-05
GO:0016885 ligase activity, forming carbon-carbon bonds 3.23% (3/93) 7.34 1e-06 3.4e-05
GO:0016421 CoA carboxylase activity 3.23% (3/93) 7.36 1e-06 3.5e-05
GO:0019216 regulation of lipid metabolic process 3.23% (3/93) 7.4 1e-06 3.6e-05
GO:0015804 neutral amino acid transport 2.15% (2/93) 10.07 2e-06 3.8e-05
GO:0004750 D-ribulose-phosphate 3-epimerase activity 2.15% (2/93) 9.96 2e-06 4.2e-05
GO:0016209 antioxidant activity 5.38% (5/93) 4.41 4e-06 9.8e-05
GO:0009083 branched-chain amino acid catabolic process 3.23% (3/93) 6.23 1e-05 0.000206
GO:0015807 L-amino acid transport 2.15% (2/93) 8.7 1.1e-05 0.000216
GO:0072349 modified amino acid transmembrane transporter activity 2.15% (2/93) 8.3 1.9e-05 0.000363
GO:0072337 modified amino acid transport 2.15% (2/93) 8.27 2e-05 0.000365
GO:0032991 protein-containing complex 16.13% (15/93) 1.8 2.4e-05 0.0004
GO:0044262 obsolete cellular carbohydrate metabolic process 2.15% (2/93) 8.17 2.3e-05 0.000402
GO:0009052 pentose-phosphate shunt, non-oxidative branch 2.15% (2/93) 8.07 2.7e-05 0.000423
GO:0009081 branched-chain amino acid metabolic process 3.23% (3/93) 5.5 4.5e-05 0.000684
GO:0005739 mitochondrion 6.45% (6/93) 3.14 6.9e-05 0.001014
GO:0072348 sulfur compound transport 2.15% (2/93) 7.34 7.4e-05 0.001058
GO:0045037 protein import into chloroplast stroma 2.15% (2/93) 7.1 0.000103 0.001413
GO:0046395 carboxylic acid catabolic process 4.3% (4/93) 4.01 0.000123 0.001585
GO:0016054 organic acid catabolic process 4.3% (4/93) 4.01 0.000123 0.001585
GO:2000762 regulation of phenylpropanoid metabolic process 2.15% (2/93) 6.8 0.000156 0.001955
GO:0043455 regulation of secondary metabolic process 2.15% (2/93) 6.69 0.000181 0.002203
GO:0019682 glyceraldehyde-3-phosphate metabolic process 2.15% (2/93) 6.66 0.00019 0.002244
GO:1901606 alpha-amino acid catabolic process 3.23% (3/93) 4.64 0.000256 0.002939
GO:0009063 amino acid catabolic process 3.23% (3/93) 4.54 0.000313 0.003491
GO:0044282 small molecule catabolic process 4.3% (4/93) 3.54 0.00042 0.004569
GO:0072596 establishment of protein localization to chloroplast 2.15% (2/93) 5.94 0.000514 0.005443
GO:0072598 protein localization to chloroplast 2.15% (2/93) 5.71 0.000702 0.007251
GO:1901682 sulfur compound transmembrane transporter activity 2.15% (2/93) 5.53 0.0009 0.009065
GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives 2.15% (2/93) 5.46 0.000984 0.009239
GO:0009987 cellular process 32.26% (30/93) 0.81 0.000968 0.009298
GO:0032511 late endosome to vacuole transport via multivesicular body sorting pathway 2.15% (2/93) 5.48 0.000958 0.009419
GO:0015179 L-amino acid transmembrane transporter activity 2.15% (2/93) 5.35 0.00115 0.010551
GO:0016854 racemase and epimerase activity 2.15% (2/93) 5.27 0.001289 0.011576
GO:0071985 multivesicular body sorting pathway 2.15% (2/93) 5.18 0.001445 0.012177
GO:0032509 endosome transport via multivesicular body sorting pathway 2.15% (2/93) 5.18 0.001445 0.012177
GO:0045038 protein import into chloroplast thylakoid membrane 1.08% (1/93) 9.49 0.001392 0.012232
GO:0008380 RNA splicing 3.23% (3/93) 3.61 0.002009 0.016596
GO:0045324 late endosome to vacuole transport 2.15% (2/93) 4.87 0.002219 0.017968
GO:0044237 cellular metabolic process 22.58% (21/93) 0.95 0.002267 0.018004
GO:0008150 biological_process 41.94% (39/93) 0.59 0.002371 0.018479
GO:0061656 SUMO conjugating enzyme activity 1.08% (1/93) 8.57 0.002628 0.020097
GO:0034719 SMN-Sm protein complex 1.08% (1/93) 8.41 0.002936 0.02205
GO:0016592 mediator complex 2.15% (2/93) 4.63 0.003046 0.022071
GO:0006081 cellular aldehyde metabolic process 2.15% (2/93) 4.61 0.003161 0.022128
GO:0006796 phosphate-containing compound metabolic process 11.83% (11/93) 1.4 0.00301 0.022198
GO:0043186 P granule 1.08% (1/93) 8.27 0.003245 0.022336
GO:0006793 phosphorus metabolic process 11.83% (11/93) 1.39 0.003145 0.022393
GO:0045901 positive regulation of translational elongation 1.08% (1/93) 8.2 0.003399 0.023015
GO:0051013 microtubule severing 1.08% (1/93) 8.07 0.003708 0.024306
GO:0071806 protein transmembrane transport 2.15% (2/93) 4.49 0.003703 0.024669
GO:0071705 nitrogen compound transport 5.38% (5/93) 2.26 0.004123 0.026608
GO:0072594 establishment of protein localization to organelle 3.23% (3/93) 3.17 0.004665 0.029638
GO:0019789 SUMO transferase activity 1.08% (1/93) 7.57 0.005249 0.031877
GO:0005774 vacuolar membrane 2.15% (2/93) 4.25 0.005109 0.031972
GO:0022402 cell cycle process 4.3% (4/93) 2.54 0.005196 0.032031
GO:0007034 vacuolar transport 2.15% (2/93) 4.14 0.005875 0.034662
GO:0033365 protein localization to organelle 3.23% (3/93) 3.06 0.0058 0.034719
GO:0045905 positive regulation of translational termination 1.08% (1/93) 7.27 0.00648 0.037167
GO:0043243 positive regulation of protein-containing complex disassembly 1.08% (1/93) 7.27 0.00648 0.037167
GO:0006449 regulation of translational termination 1.08% (1/93) 7.2 0.006787 0.037374
GO:0006448 regulation of translational elongation 1.08% (1/93) 7.2 0.006787 0.037374
GO:0004609 phosphatidylserine decarboxylase activity 1.08% (1/93) 7.17 0.006941 0.037718
GO:0005575 cellular_component 31.18% (29/93) 0.64 0.00705 0.037815
GO:1901605 alpha-amino acid metabolic process 3.23% (3/93) 2.98 0.006776 0.038337
GO:0000340 RNA 7-methylguanosine cap binding 1.08% (1/93) 6.99 0.007863 0.041632
GO:0033540 fatty acid beta-oxidation using acyl-CoA oxidase 1.08% (1/93) 6.93 0.00817 0.042176
GO:0051641 cellular localization 5.38% (5/93) 2.02 0.008099 0.042341
GO:0003997 acyl-CoA oxidase activity 1.08% (1/93) 6.9 0.008323 0.042438
GO:0016197 endosomal transport 2.15% (2/93) 3.87 0.008426 0.042441
GO:0018205 peptidyl-lysine modification 2.15% (2/93) 3.8 0.009286 0.046207
GO:0004672 protein kinase activity 8.6% (8/93) 1.44 0.009693 0.047657
GO:0090079 translation regulator activity, nucleic acid binding 2.15% (2/93) 3.74 0.010025 0.048141
GO:0008135 translation factor activity, RNA binding 2.15% (2/93) 3.74 0.010025 0.048141
GO:0005687 U4 snRNP 1.08% (1/93) 6.57 0.01047 0.049137
GO:0071702 organic substance transport 5.38% (5/93) 1.93 0.010439 0.049556
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (93) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms