Coexpression cluster: Cluster_560 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0031492 nucleosomal DNA binding 10.2% (5/49) 9.88 0.0 0.0
GO:0045910 negative regulation of DNA recombination 10.2% (5/49) 9.3 0.0 0.0
GO:0000018 regulation of DNA recombination 10.2% (5/49) 9.03 0.0 0.0
GO:0051053 negative regulation of DNA metabolic process 10.2% (5/49) 7.97 0.0 0.0
GO:0000786 nucleosome 10.2% (5/49) 7.98 0.0 0.0
GO:0006334 nucleosome assembly 10.2% (5/49) 8.02 0.0 0.0
GO:0030261 chromosome condensation 10.2% (5/49) 7.84 0.0 0.0
GO:0034728 nucleosome organization 10.2% (5/49) 7.65 0.0 0.0
GO:0031491 nucleosome binding 10.2% (5/49) 7.59 0.0 0.0
GO:0031490 chromatin DNA binding 10.2% (5/49) 6.85 0.0 0.0
GO:0051052 regulation of DNA metabolic process 10.2% (5/49) 6.68 0.0 0.0
GO:0005372 water transmembrane transporter activity 8.16% (4/49) 7.76 0.0 0.0
GO:0015250 water channel activity 8.16% (4/49) 7.76 0.0 0.0
GO:0065004 protein-DNA complex assembly 10.2% (5/49) 6.45 0.0 0.0
GO:0045934 negative regulation of nucleobase-containing compound metabolic process 10.2% (5/49) 5.96 0.0 0.0
GO:0032993 protein-DNA complex 10.2% (5/49) 5.43 0.0 1e-06
GO:0008374 O-acyltransferase activity 10.2% (5/49) 5.39 0.0 1e-06
GO:0051172 negative regulation of nitrogen compound metabolic process 10.2% (5/49) 5.25 0.0 2e-06
GO:0006338 chromatin remodeling 10.2% (5/49) 5.16 0.0 3e-06
GO:0006325 chromatin organization 10.2% (5/49) 5.04 0.0 4e-06
GO:0003682 chromatin binding 10.2% (5/49) 4.93 1e-06 5e-06
GO:0071824 protein-DNA complex organization 10.2% (5/49) 4.71 1e-06 1e-05
GO:0003690 double-stranded DNA binding 12.24% (6/49) 4.06 2e-06 1.1e-05
GO:0051276 chromosome organization 10.2% (5/49) 4.45 4e-06 2.2e-05
GO:0065003 protein-containing complex assembly 10.2% (5/49) 4.24 7e-06 4.4e-05
GO:0045735 nutrient reservoir activity 4.08% (2/49) 8.75 1e-05 6.1e-05
GO:0010605 negative regulation of macromolecule metabolic process 10.2% (5/49) 4.1 1.2e-05 6.5e-05
GO:0009892 negative regulation of metabolic process 10.2% (5/49) 4.07 1.3e-05 6.7e-05
GO:0031324 negative regulation of cellular metabolic process 10.2% (5/49) 4.07 1.2e-05 6.8e-05
GO:0022803 passive transmembrane transporter activity 8.16% (4/49) 4.78 1.5e-05 7.3e-05
GO:0015267 channel activity 8.16% (4/49) 4.78 1.5e-05 7.3e-05
GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups 10.2% (5/49) 3.93 2e-05 9.5e-05
GO:0016413 O-acetyltransferase activity 6.12% (3/49) 5.83 2.2e-05 0.000102
GO:0009415 response to water 4.08% (2/49) 8.07 2.7e-05 0.000115
GO:0009414 response to water deprivation 4.08% (2/49) 8.09 2.6e-05 0.000116
GO:0044877 protein-containing complex binding 10.2% (5/49) 3.8 3.1e-05 0.00013
GO:0048523 negative regulation of cellular process 10.2% (5/49) 3.69 4.4e-05 0.000179
GO:0022607 cellular component assembly 10.2% (5/49) 3.66 4.8e-05 0.000186
GO:0048519 negative regulation of biological process 10.2% (5/49) 3.67 4.7e-05 0.000189
GO:0000774 adenyl-nucleotide exchange factor activity 4.08% (2/49) 7.54 5.6e-05 0.000213
GO:0043933 protein-containing complex organization 10.2% (5/49) 3.5 8.1e-05 0.000302
GO:1901702 salt transmembrane transporter activity 8.16% (4/49) 4.13 8.6e-05 0.00031
GO:0043231 intracellular membrane-bounded organelle 24.49% (12/49) 1.8 0.000112 0.000396
GO:0001101 response to acid chemical 4.08% (2/49) 6.98 0.000121 0.000408
GO:0043227 membrane-bounded organelle 24.49% (12/49) 1.79 0.00012 0.000416
GO:0060590 ATPase regulator activity 4.08% (2/49) 6.9 0.000136 0.00045
GO:0050821 protein stabilization 4.08% (2/49) 6.77 0.000162 0.000525
GO:0016407 acetyltransferase activity 6.12% (3/49) 4.84 0.000168 0.000532
GO:0031647 regulation of protein stability 4.08% (2/49) 6.62 0.000199 0.000616
GO:1902074 response to salt 4.08% (2/49) 6.48 0.000242 0.000735
GO:0016746 acyltransferase activity 10.2% (5/49) 3.08 0.000318 0.000948
GO:0110165 cellular anatomical entity 38.78% (19/49) 1.13 0.0004 0.001169
GO:0015318 inorganic molecular entity transmembrane transporter activity 8.16% (4/49) 3.52 0.000415 0.00119
GO:0055085 transmembrane transport 12.24% (6/49) 2.59 0.000461 0.001252
GO:0043226 organelle 24.49% (12/49) 1.59 0.000454 0.001256
GO:0043229 intracellular organelle 24.49% (12/49) 1.59 0.000454 0.001278
GO:0006996 organelle organization 10.2% (5/49) 2.85 0.000639 0.001705
GO:0051087 protein-folding chaperone binding 4.08% (2/49) 5.55 0.000862 0.002259
GO:0005794 Golgi apparatus 6.12% (3/49) 3.86 0.001186 0.003055
GO:0010035 response to inorganic substance 4.08% (2/49) 5.29 0.001245 0.003154
GO:0060255 regulation of macromolecule metabolic process 14.29% (7/49) 2.07 0.001289 0.003212
GO:0031323 regulation of cellular metabolic process 14.29% (7/49) 2.06 0.001334 0.003271
GO:0009812 flavonoid metabolic process 2.04% (1/49) 9.33 0.001548 0.003565
GO:0045430 chalcone isomerase activity 2.04% (1/49) 9.33 0.001548 0.003565
GO:0009813 flavonoid biosynthetic process 2.04% (1/49) 9.33 0.001548 0.003565
GO:0019222 regulation of metabolic process 14.29% (7/49) 2.02 0.001599 0.003574
GO:0065007 biological regulation 18.37% (9/49) 1.69 0.001598 0.003626
GO:0019219 regulation of nucleobase-containing compound metabolic process 12.24% (6/49) 2.26 0.001513 0.00365
GO:0022857 transmembrane transporter activity 12.24% (6/49) 2.2 0.001857 0.00409
GO:0005575 cellular_component 38.78% (19/49) 0.96 0.001901 0.004129
GO:0005634 nucleus 14.29% (7/49) 1.95 0.002072 0.004437
GO:0005215 transporter activity 12.24% (6/49) 2.13 0.002357 0.004976
GO:1901700 response to oxygen-containing compound 4.08% (2/49) 4.69 0.002778 0.005783
GO:0051171 regulation of nitrogen compound metabolic process 12.24% (6/49) 2.08 0.002821 0.005795
GO:0080090 regulation of primary metabolic process 12.24% (6/49) 2.07 0.002956 0.005991
GO:0003677 DNA binding 12.24% (6/49) 2.06 0.003081 0.006163
GO:0070161 anchoring junction 4.08% (2/49) 4.56 0.003334 0.006415
GO:0005911 cell-cell junction 4.08% (2/49) 4.57 0.003297 0.006424
GO:0030054 cell junction 4.08% (2/49) 4.55 0.00339 0.006442
GO:0009506 plasmodesma 4.08% (2/49) 4.58 0.003266 0.006447
GO:0005773 vacuole 4.08% (2/49) 4.37 0.004311 0.008089
GO:0006833 water transport 2.04% (1/49) 7.03 0.007636 0.013985
GO:0042044 fluid transport 2.04% (1/49) 7.03 0.007636 0.013985
GO:0003674 molecular_function 53.06% (26/49) 0.59 0.008332 0.015076
GO:0016872 intramolecular lyase activity 2.04% (1/49) 6.81 0.00885 0.015825
GO:0016043 cellular component organization 10.2% (5/49) 1.95 0.009397 0.016418
GO:0006810 transport 12.24% (6/49) 1.72 0.009296 0.01643
GO:0009628 response to abiotic stimulus 4.08% (2/49) 3.73 0.01009 0.017428
GO:0050794 regulation of cellular process 14.29% (7/49) 1.5 0.011031 0.01884
GO:0051234 establishment of localization 12.24% (6/49) 1.66 0.011426 0.019298
GO:0051179 localization 12.24% (6/49) 1.6 0.013504 0.022557
GO:0050789 regulation of biological process 14.29% (7/49) 1.43 0.014174 0.023418
GO:0071840 cellular component organization or biogenesis 10.2% (5/49) 1.79 0.014512 0.023718
GO:0010033 response to organic substance 4.08% (2/49) 3.42 0.015099 0.024159
GO:0030527 structural constituent of chromatin 2.04% (1/49) 6.04 0.015055 0.024344
GO:0065008 regulation of biological quality 4.08% (2/49) 3.36 0.016469 0.026076
GO:0042221 response to chemical 4.08% (2/49) 3.06 0.024186 0.0379
GO:0009705 plant-type vacuole membrane 2.04% (1/49) 5.26 0.025843 0.040083
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (49) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms