Coexpression cluster: Cluster_840 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0009832 plant-type cell wall biogenesis 7.29% (7/96) 5.43 0.0 0.0
GO:0042546 cell wall biogenesis 7.29% (7/96) 5.19 0.0 0.0
GO:0071669 plant-type cell wall organization or biogenesis 7.29% (7/96) 5.22 0.0 0.0
GO:0000774 adenyl-nucleotide exchange factor activity 4.17% (4/96) 7.57 0.0 0.0
GO:0030136 clathrin-coated vesicle 4.17% (4/96) 7.24 0.0 0.0
GO:0005905 clathrin-coated pit 4.17% (4/96) 7.4 0.0 0.0
GO:0032050 clathrin heavy chain binding 4.17% (4/96) 7.25 0.0 0.0
GO:0048268 clathrin coat assembly 4.17% (4/96) 7.27 0.0 1e-06
GO:0005545 1-phosphatidylinositol binding 4.17% (4/96) 7.27 0.0 1e-06
GO:0071554 cell wall organization or biogenesis 7.29% (7/96) 4.58 0.0 1e-06
GO:0044085 cellular component biogenesis 7.29% (7/96) 4.55 0.0 1e-06
GO:0000271 polysaccharide biosynthetic process 7.29% (7/96) 4.73 0.0 1e-06
GO:0060590 ATPase regulator activity 4.17% (4/96) 6.93 0.0 1e-06
GO:0098590 plasma membrane region 4.17% (4/96) 6.93 0.0 1e-06
GO:0050821 protein stabilization 4.17% (4/96) 6.8 0.0 1e-06
GO:0031647 regulation of protein stability 4.17% (4/96) 6.65 0.0 1e-06
GO:0072583 clathrin-dependent endocytosis 4.17% (4/96) 6.59 0.0 1e-06
GO:0016051 carbohydrate biosynthetic process 7.29% (7/96) 4.24 0.0 2e-06
GO:0045492 xylan biosynthetic process 4.17% (4/96) 6.47 0.0 2e-06
GO:0071840 cellular component organization or biogenesis 15.62% (15/96) 2.41 0.0 2e-06
GO:0006900 vesicle budding from membrane 4.17% (4/96) 6.39 0.0 2e-06
GO:0005976 polysaccharide metabolic process 7.29% (7/96) 4.14 0.0 2e-06
GO:0009834 plant-type secondary cell wall biogenesis 4.17% (4/96) 6.4 0.0 2e-06
GO:0016788 hydrolase activity, acting on ester bonds 12.5% (12/96) 2.78 0.0 2e-06
GO:0030135 coated vesicle 4.17% (4/96) 6.28 0.0 3e-06
GO:0006898 receptor-mediated endocytosis 4.17% (4/96) 6.19 0.0 3e-06
GO:0030276 clathrin binding 4.17% (4/96) 6.15 0.0 3e-06
GO:0045491 xylan metabolic process 4.17% (4/96) 5.8 1e-06 8e-06
GO:0034647 histone H3K4me/H3K4me2/H3K4me3 demethylase activity 3.12% (3/96) 7.13 2e-06 1.3e-05
GO:0051087 protein-folding chaperone binding 4.17% (4/96) 5.58 2e-06 1.4e-05
GO:0032453 histone H3K4 demethylase activity 3.12% (3/96) 7.05 2e-06 1.4e-05
GO:0005975 carbohydrate metabolic process 10.42% (10/96) 2.8 2e-06 1.5e-05
GO:0070592 cell wall polysaccharide biosynthetic process 4.17% (4/96) 5.47 2e-06 1.7e-05
GO:0043933 protein-containing complex organization 8.33% (8/96) 3.21 3e-06 2e-05
GO:0005546 phosphatidylinositol-4,5-bisphosphate binding 4.17% (4/96) 5.37 3e-06 2.2e-05
GO:1902936 phosphatidylinositol bisphosphate binding 4.17% (4/96) 5.25 4e-06 2.9e-05
GO:0010410 hemicellulose metabolic process 4.17% (4/96) 5.21 5e-06 3.2e-05
GO:1901981 phosphatidylinositol phosphate binding 4.17% (4/96) 5.14 6e-06 3.8e-05
GO:0006897 endocytosis 4.17% (4/96) 5.11 6e-06 4e-05
GO:0000149 SNARE binding 4.17% (4/96) 5.03 8e-06 4.8e-05
GO:0010383 cell wall polysaccharide metabolic process 4.17% (4/96) 5.01 8e-06 4.9e-05
GO:0016050 vesicle organization 4.17% (4/96) 4.95 1e-05 5.8e-05
GO:0044042 glucan metabolic process 5.21% (5/96) 4.14 1.1e-05 6.1e-05
GO:0044036 cell wall macromolecule metabolic process 4.17% (4/96) 4.78 1.6e-05 8.7e-05
GO:0141052 histone H3 demethylase activity 3.12% (3/96) 5.99 1.6e-05 8.7e-05
GO:0098657 import into cell 4.17% (4/96) 4.73 1.8e-05 9.3e-05
GO:0140457 protein demethylase activity 3.12% (3/96) 5.89 2e-05 9.8e-05
GO:0032452 histone demethylase activity 3.12% (3/96) 5.89 2e-05 9.8e-05
GO:0035091 phosphatidylinositol binding 4.17% (4/96) 4.71 1.9e-05 9.9e-05
GO:1990937 xylan acetylation 2.08% (2/96) 8.06 2.7e-05 0.000132
GO:0005543 phospholipid binding 4.17% (4/96) 4.17 8e-05 0.000383
GO:0032451 demethylase activity 3.12% (3/96) 5.12 9.7e-05 0.000455
GO:0016706 2-oxoglutarate-dependent dioxygenase activity 3.12% (3/96) 4.93 0.000143 0.000654
GO:0061024 membrane organization 4.17% (4/96) 3.87 0.000179 0.000807
GO:0016760 cellulose synthase (UDP-forming) activity 3.12% (3/96) 4.75 0.000206 0.000893
GO:0009833 plant-type primary cell wall biogenesis 3.12% (3/96) 4.76 0.000203 0.000897
GO:0016787 hydrolase activity 15.62% (15/96) 1.51 0.000231 0.000953
GO:0009059 macromolecule biosynthetic process 7.29% (7/96) 2.53 0.000229 0.000958
GO:0016759 cellulose synthase activity 3.12% (3/96) 4.7 0.000227 0.000968
GO:0010417 glucuronoxylan biosynthetic process 2.08% (2/96) 6.43 0.00026 0.001018
GO:0010413 glucuronoxylan metabolic process 2.08% (2/96) 6.43 0.00026 0.001018
GO:0016174 NAD(P)H oxidase H2O2-forming activity 2.08% (2/96) 6.44 0.000256 0.001038
GO:0097708 intracellular vesicle 4.17% (4/96) 3.65 0.000316 0.001198
GO:0031410 cytoplasmic vesicle 4.17% (4/96) 3.65 0.000316 0.001198
GO:0030243 cellulose metabolic process 3.12% (3/96) 4.51 0.000331 0.00122
GO:0030244 cellulose biosynthetic process 3.12% (3/96) 4.52 0.00033 0.001235
GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor 2.08% (2/96) 6.13 0.000395 0.001433
GO:0000785 chromatin 3.12% (3/96) 4.4 0.000419 0.001497
GO:0065008 regulation of biological quality 4.17% (4/96) 3.39 0.000623 0.002162
GO:0031982 vesicle 4.17% (4/96) 3.39 0.000619 0.002179
GO:0051273 beta-glucan metabolic process 3.12% (3/96) 4.18 0.000646 0.00218
GO:0051274 beta-glucan biosynthetic process 3.12% (3/96) 4.18 0.000644 0.002205
GO:0008289 lipid binding 4.17% (4/96) 3.35 0.000683 0.002272
GO:0010411 xyloglucan metabolic process 2.08% (2/96) 5.51 0.000918 0.002975
GO:0051213 dioxygenase activity 3.12% (3/96) 4.01 0.000915 0.003003
GO:0140993 histone modifying activity 3.12% (3/96) 3.95 0.001026 0.003282
GO:0009250 glucan biosynthetic process 3.12% (3/96) 3.82 0.001326 0.004184
GO:0032993 protein-DNA complex 3.12% (3/96) 3.72 0.0016 0.004986
GO:0005802 trans-Golgi network 3.12% (3/96) 3.65 0.001838 0.005652
GO:0065003 protein-containing complex assembly 4.17% (4/96) 2.95 0.001911 0.005805
GO:0098791 Golgi apparatus subcompartment 3.12% (3/96) 3.53 0.002359 0.007076
GO:0031984 organelle subcompartment 3.12% (3/96) 3.49 0.002525 0.007483
GO:0006338 chromatin remodeling 3.12% (3/96) 3.45 0.002716 0.007953
GO:0098772 molecular function regulator activity 4.17% (4/96) 2.72 0.003318 0.009599
GO:0006325 chromatin organization 3.12% (3/96) 3.33 0.003455 0.009878
GO:0016043 cellular component organization 8.33% (8/96) 1.66 0.004038 0.01141
GO:0008194 UDP-glycosyltransferase activity 4.17% (4/96) 2.63 0.004121 0.01151
GO:0035251 UDP-glucosyltransferase activity 3.12% (3/96) 3.07 0.005718 0.01579
GO:0016757 glycosyltransferase activity 5.21% (5/96) 2.13 0.005986 0.016343
GO:0005464 UDP-xylose transmembrane transporter activity 1.04% (1/96) 7.36 0.006053 0.016343
GO:0071824 protein-DNA complex organization 3.12% (3/96) 3.0 0.006445 0.017209
GO:0016758 hexosyltransferase activity 4.17% (4/96) 2.42 0.006925 0.018095
GO:0016651 oxidoreductase activity, acting on NAD(P)H 2.08% (2/96) 4.02 0.006921 0.018281
GO:1903047 mitotic cell cycle process 3.12% (3/96) 2.92 0.007517 0.019433
GO:1900034 regulation of cellular response to heat 1.04% (1/96) 7.03 0.00764 0.019541
GO:0022607 cellular component assembly 4.17% (4/96) 2.37 0.007738 0.019587
GO:0005794 Golgi apparatus 3.12% (3/96) 2.89 0.007945 0.019903
GO:0016192 vesicle-mediated transport 4.17% (4/96) 2.35 0.008224 0.020393
GO:0046527 glucosyltransferase activity 3.12% (3/96) 2.79 0.009721 0.023861
GO:0003824 catalytic activity 28.12% (27/96) 0.64 0.010424 0.02533
GO:0006996 organelle organization 5.21% (5/96) 1.88 0.011914 0.028664
GO:0008352 katanin complex 1.04% (1/96) 6.25 0.013016 0.031009
GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity 1.04% (1/96) 6.06 0.014907 0.035169
GO:0016407 acetyltransferase activity 2.08% (2/96) 3.28 0.018324 0.042814
GO:0007019 microtubule depolymerization 1.04% (1/96) 5.63 0.019931 0.046126
GO:0042285 xylosyltransferase activity 1.04% (1/96) 5.61 0.020244 0.046409
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (96) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms