Coexpression cluster: Cluster_342 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016592 mediator complex 4.72% (6/127) 5.77 0.0 1e-06
GO:0045944 positive regulation of transcription by RNA polymerase II 4.72% (6/127) 4.7 0.0 2.3e-05
GO:0003713 transcription coactivator activity 3.15% (4/127) 5.75 1e-06 0.000112
GO:0005667 transcription regulator complex 4.72% (6/127) 4.11 2e-06 0.000121
GO:0045893 positive regulation of DNA-templated transcription 4.72% (6/127) 3.91 4e-06 0.000177
GO:1902680 positive regulation of RNA biosynthetic process 4.72% (6/127) 3.91 4e-06 0.000177
GO:1900150 regulation of defense response to fungus 2.36% (3/127) 6.44 6e-06 0.000241
GO:0031490 chromatin DNA binding 3.15% (4/127) 5.16 6e-06 0.000245
GO:0009891 positive regulation of biosynthetic process 4.72% (6/127) 3.62 1.1e-05 0.000258
GO:0010557 positive regulation of macromolecule biosynthetic process 4.72% (6/127) 3.62 1.1e-05 0.000258
GO:0031328 positive regulation of cellular biosynthetic process 4.72% (6/127) 3.62 1.1e-05 0.000258
GO:0045935 positive regulation of nucleobase-containing compound metabolic process 4.72% (6/127) 3.58 1.3e-05 0.00028
GO:0051254 positive regulation of RNA metabolic process 4.72% (6/127) 3.66 1e-05 0.000287
GO:0004046 aminoacylase activity 1.57% (2/127) 8.82 9e-06 0.000311
GO:0002831 regulation of response to biotic stimulus 2.36% (3/127) 5.72 2.9e-05 0.000578
GO:0032101 regulation of response to external stimulus 2.36% (3/127) 5.63 3.4e-05 0.000649
GO:0031325 positive regulation of cellular metabolic process 4.72% (6/127) 3.31 3.7e-05 0.000655
GO:0009893 positive regulation of metabolic process 4.72% (6/127) 3.09 8.5e-05 0.001163
GO:0051173 positive regulation of nitrogen compound metabolic process 4.72% (6/127) 3.11 7.9e-05 0.001186
GO:0048522 positive regulation of cellular process 4.72% (6/127) 3.13 7.2e-05 0.001208
GO:0010604 positive regulation of macromolecule metabolic process 4.72% (6/127) 3.09 8.4e-05 0.001214
GO:0031347 regulation of defense response 2.36% (3/127) 5.23 7.7e-05 0.001225
GO:0048518 positive regulation of biological process 4.72% (6/127) 2.87 0.000191 0.002511
GO:0006357 regulation of transcription by RNA polymerase II 4.72% (6/127) 2.83 0.000221 0.002667
GO:0043024 ribosomal small subunit binding 1.57% (2/127) 6.56 0.000216 0.002723
GO:0003712 transcription coregulator activity 3.15% (4/127) 3.69 0.000289 0.003353
GO:0044877 protein-containing complex binding 4.72% (6/127) 2.69 0.000376 0.0042
GO:0080134 regulation of response to stress 2.36% (3/127) 4.4 0.000422 0.004554
GO:0004843 cysteine-type deubiquitinase activity 2.36% (3/127) 4.13 0.000721 0.007506
GO:2001141 regulation of RNA biosynthetic process 7.87% (10/127) 1.75 0.000844 0.008218
GO:0006355 regulation of DNA-templated transcription 7.87% (10/127) 1.75 0.000844 0.008218
GO:0003682 chromatin binding 3.15% (4/127) 3.23 0.000942 0.008623
GO:0101005 deubiquitinase activity 2.36% (3/127) 4.01 0.000914 0.008629
GO:0051252 regulation of RNA metabolic process 7.87% (10/127) 1.68 0.001226 0.010887
GO:0019783 ubiquitin-like protein peptidase activity 2.36% (3/127) 3.8 0.001374 0.011858
GO:0002181 cytoplasmic translation 1.57% (2/127) 5.17 0.001473 0.012353
GO:0019219 regulation of nucleobase-containing compound metabolic process 7.87% (10/127) 1.62 0.001638 0.013373
GO:0042254 ribosome biogenesis 1.57% (2/127) 5.05 0.001736 0.013446
GO:0003676 nucleic acid binding 14.17% (18/127) 1.11 0.001694 0.013461
GO:0010468 regulation of gene expression 8.66% (11/127) 1.49 0.002009 0.015166
GO:0010556 regulation of macromolecule biosynthetic process 8.66% (11/127) 1.48 0.002117 0.01559
GO:0009889 regulation of biosynthetic process 8.66% (11/127) 1.45 0.002439 0.01713
GO:0031326 regulation of cellular biosynthetic process 8.66% (11/127) 1.45 0.002425 0.017439
GO:0005740 mitochondrial envelope 0.79% (1/127) 8.4 0.002955 0.02028
GO:0048583 regulation of response to stimulus 2.36% (3/127) 3.29 0.003749 0.025158
GO:0051171 regulation of nitrogen compound metabolic process 7.87% (10/127) 1.44 0.003984 0.026158
GO:0080090 regulation of primary metabolic process 7.87% (10/127) 1.43 0.004254 0.026765
GO:0060255 regulation of macromolecule metabolic process 8.66% (11/127) 1.35 0.004208 0.027036
GO:0031323 regulation of cellular metabolic process 8.66% (11/127) 1.34 0.0044 0.027117
GO:0019843 rRNA binding 1.57% (2/127) 4.25 0.005101 0.030809
GO:0019222 regulation of metabolic process 8.66% (11/127) 1.29 0.005546 0.032842
GO:0008234 cysteine-type peptidase activity 2.36% (3/127) 3.06 0.005843 0.033296
GO:0065007 biological regulation 11.81% (15/127) 1.05 0.005832 0.033873
GO:0004784 superoxide dismutase activity 0.79% (1/127) 7.12 0.007161 0.039319
GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor 0.79% (1/127) 7.12 0.007161 0.039319
GO:0050789 regulation of biological process 11.02% (14/127) 1.06 0.00756 0.04077
GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides 1.57% (2/127) 3.9 0.008125 0.043047
GO:0005751 mitochondrial respiratory chain complex IV 0.79% (1/127) 6.82 0.008838 0.043756
GO:0043022 ribosome binding 1.57% (2/127) 3.85 0.008699 0.043784
GO:0022613 ribonucleoprotein complex biogenesis 1.57% (2/127) 3.86 0.008598 0.044008
GO:0022625 cytosolic large ribosomal subunit 1.57% (2/127) 3.87 0.008522 0.044374
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (127) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms