Coexpression cluster: Cluster_571 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005575 cellular_component 48.15% (65/135) 1.27 0.0 0.0
GO:0009987 cellular process 43.7% (59/135) 1.25 0.0 0.0
GO:0032991 protein-containing complex 20.74% (28/135) 2.16 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 20.74% (28/135) 1.96 0.0 0.0
GO:0043226 organelle 25.93% (35/135) 1.67 0.0 0.0
GO:0110165 cellular anatomical entity 40.0% (54/135) 1.18 0.0 0.0
GO:0090304 nucleic acid metabolic process 17.78% (24/135) 2.15 0.0 0.0
GO:0043229 intracellular organelle 25.93% (35/135) 1.67 0.0 0.0
GO:0034198 cellular response to amino acid starvation 2.96% (4/135) 8.08 0.0 0.0
GO:1990928 response to amino acid starvation 2.96% (4/135) 8.08 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 18.52% (25/135) 1.98 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 19.26% (26/135) 1.86 0.0 1e-06
GO:0043228 non-membrane-bounded organelle 9.63% (13/135) 2.95 0.0 1e-06
GO:0046483 heterocycle metabolic process 18.52% (25/135) 1.88 0.0 1e-06
GO:0043232 intracellular non-membrane-bounded organelle 9.63% (13/135) 2.95 0.0 1e-06
GO:0006725 cellular aromatic compound metabolic process 18.52% (25/135) 1.85 0.0 1e-06
GO:0008150 biological_process 49.63% (67/135) 0.84 0.0 3e-06
GO:0016070 RNA metabolic process 11.85% (16/135) 2.29 0.0 9e-06
GO:0005730 nucleolus 5.19% (7/135) 3.9 1e-06 2.1e-05
GO:0044237 cellular metabolic process 27.41% (37/135) 1.22 1e-06 2.1e-05
GO:0033554 cellular response to stress 8.15% (11/135) 2.75 1e-06 3.1e-05
GO:0031668 cellular response to extracellular stimulus 2.96% (4/135) 5.77 1e-06 3.2e-05
GO:0071496 cellular response to external stimulus 2.96% (4/135) 5.72 1e-06 3.2e-05
GO:0007154 cell communication 2.96% (4/135) 5.72 1e-06 3.2e-05
GO:0031669 cellular response to nutrient levels 2.96% (4/135) 5.77 1e-06 3.3e-05
GO:0009267 cellular response to starvation 2.96% (4/135) 5.77 1e-06 3.3e-05
GO:0042594 response to starvation 2.96% (4/135) 5.68 1e-06 3.4e-05
GO:0003674 molecular_function 55.56% (75/135) 0.65 1e-06 3.4e-05
GO:0051716 cellular response to stimulus 8.15% (11/135) 2.71 1e-06 3.5e-05
GO:0043170 macromolecule metabolic process 25.19% (34/135) 1.21 2e-06 5.6e-05
GO:0003676 nucleic acid binding 18.52% (25/135) 1.49 2e-06 5.6e-05
GO:0018107 peptidyl-threonine phosphorylation 2.22% (3/135) 6.57 5e-06 0.000108
GO:0018210 peptidyl-threonine modification 2.22% (3/135) 6.57 5e-06 0.000108
GO:0009991 response to extracellular stimulus 2.96% (4/135) 5.17 5e-06 0.000112
GO:0031667 response to nutrient levels 2.96% (4/135) 5.18 5e-06 0.000114
GO:0006396 RNA processing 7.41% (10/135) 2.62 6e-06 0.000129
GO:0006807 nitrogen compound metabolic process 25.93% (35/135) 1.1 8e-06 0.000162
GO:0070545 PeBoW complex 1.48% (2/135) 8.66 1.2e-05 0.000219
GO:0140640 catalytic activity, acting on a nucleic acid 8.89% (12/135) 2.14 2.1e-05 0.000388
GO:0019887 protein kinase regulator activity 2.96% (4/135) 4.66 2.2e-05 0.00039
GO:0019207 kinase regulator activity 2.96% (4/135) 4.61 2.5e-05 0.000436
GO:0005488 binding 37.78% (51/135) 0.74 4.8e-05 0.000824
GO:0010608 post-transcriptional regulation of gene expression 3.7% (5/135) 3.66 5.4e-05 0.000906
GO:0034248 regulation of amide metabolic process 2.96% (4/135) 4.3 5.7e-05 0.000914
GO:0006417 regulation of translation 2.96% (4/135) 4.3 5.7e-05 0.000914
GO:0009059 macromolecule biosynthetic process 6.67% (9/135) 2.4 6.1e-05 0.000956
GO:0022402 cell cycle process 5.19% (7/135) 2.81 7.4e-05 0.001129
GO:0006281 DNA repair 5.19% (7/135) 2.73 0.000102 0.001497
GO:0007062 sister chromatid cohesion 2.22% (3/135) 5.1 0.000101 0.001522
GO:1990072 TRAPPIII protein complex 1.48% (2/135) 7.08 0.000106 0.001535
GO:0051315 attachment of mitotic spindle microtubules to kinetochore 1.48% (2/135) 7.01 0.000116 0.001613
GO:0008608 attachment of spindle microtubules to kinetochore 1.48% (2/135) 7.01 0.000116 0.001613
GO:0044238 primary metabolic process 26.67% (36/135) 0.89 0.000141 0.00192
GO:0005634 nucleus 11.11% (15/135) 1.59 0.000153 0.002047
GO:0051246 regulation of protein metabolic process 3.7% (5/135) 3.33 0.000158 0.002075
GO:0043231 intracellular membrane-bounded organelle 16.3% (22/135) 1.22 0.000185 0.002295
GO:0006974 DNA damage response 5.19% (7/135) 2.6 0.000179 0.002299
GO:0008080 N-acetyltransferase activity 2.22% (3/135) 4.81 0.000182 0.002303
GO:0003677 DNA binding 9.63% (13/135) 1.71 0.000193 0.002354
GO:0006364 rRNA processing 3.7% (5/135) 3.24 0.000206 0.00244
GO:0043227 membrane-bounded organelle 16.3% (22/135) 1.21 0.000205 0.002465
GO:0071704 organic substance metabolic process 27.41% (37/135) 0.84 0.000218 0.00253
GO:0140535 intracellular protein-containing complex 5.19% (7/135) 2.53 0.000235 0.002691
GO:0016410 N-acyltransferase activity 2.22% (3/135) 4.65 0.000254 0.002857
GO:0008152 metabolic process 28.15% (38/135) 0.81 0.00027 0.002992
GO:0005216 monoatomic ion channel activity 2.96% (4/135) 3.69 0.000288 0.003143
GO:0016072 rRNA metabolic process 3.7% (5/135) 3.13 0.000296 0.003182
GO:0005247 voltage-gated chloride channel activity 1.48% (2/135) 6.2 0.000357 0.003789
GO:0006384 transcription initiation at RNA polymerase III promoter 1.48% (2/135) 6.08 0.000425 0.00444
GO:0034470 ncRNA processing 4.44% (6/135) 2.63 0.000471 0.004533
GO:0030008 TRAPP complex 1.48% (2/135) 6.04 0.000444 0.004576
GO:0106068 SUMO ligase complex 1.48% (2/135) 6.0 0.000471 0.004588
GO:0030915 Smc5-Smc6 complex 1.48% (2/135) 6.0 0.000471 0.004588
GO:0051276 chromosome organization 3.7% (5/135) 2.99 0.000458 0.004653
GO:0034660 ncRNA metabolic process 5.19% (7/135) 2.37 0.000465 0.004654
GO:0005254 chloride channel activity 1.48% (2/135) 5.83 0.000592 0.005617
GO:0006821 chloride transport 1.48% (2/135) 5.76 0.000654 0.006122
GO:0071840 cellular component organization or biogenesis 8.89% (12/135) 1.59 0.0007 0.006388
GO:0000127 transcription factor TFIIIC complex 1.48% (2/135) 5.72 0.000694 0.006414
GO:0005829 cytosol 5.93% (8/135) 2.06 0.000737 0.006644
GO:0015267 channel activity 2.96% (4/135) 3.32 0.000759 0.006669
GO:0022803 passive transmembrane transporter activity 2.96% (4/135) 3.32 0.000759 0.006669
GO:0033047 regulation of mitotic sister chromatid segregation 1.48% (2/135) 5.5 0.00094 0.006844
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 1.48% (2/135) 5.51 0.00093 0.006845
GO:0033048 negative regulation of mitotic sister chromatid segregation 1.48% (2/135) 5.51 0.000921 0.006846
GO:0045841 negative regulation of mitotic metaphase/anaphase transition 1.48% (2/135) 5.51 0.000921 0.006846
GO:0051985 negative regulation of chromosome segregation 1.48% (2/135) 5.51 0.000921 0.006846
GO:0033046 negative regulation of sister chromatid segregation 1.48% (2/135) 5.51 0.000921 0.006846
GO:0045839 negative regulation of mitotic nuclear division 1.48% (2/135) 5.51 0.000921 0.006846
GO:2000816 negative regulation of mitotic sister chromatid separation 1.48% (2/135) 5.51 0.000921 0.006846
GO:1905819 negative regulation of chromosome separation 1.48% (2/135) 5.51 0.000921 0.006846
GO:1902100 negative regulation of metaphase/anaphase transition of cell cycle 1.48% (2/135) 5.51 0.000921 0.006846
GO:0015108 chloride transmembrane transporter activity 1.48% (2/135) 5.45 0.000997 0.007189
GO:0000776 kinetochore 1.48% (2/135) 5.44 0.001017 0.007257
GO:0071174 mitotic spindle checkpoint signaling 1.48% (2/135) 5.53 0.000902 0.00731
GO:0071173 spindle assembly checkpoint signaling 1.48% (2/135) 5.53 0.000902 0.00731
GO:0031577 spindle checkpoint signaling 1.48% (2/135) 5.53 0.000902 0.00731
GO:0007094 mitotic spindle assembly checkpoint signaling 1.48% (2/135) 5.53 0.000902 0.00731
GO:0051784 negative regulation of nuclear division 1.48% (2/135) 5.41 0.001056 0.007466
GO:0003723 RNA binding 7.41% (10/135) 1.75 0.000871 0.007562
GO:0007064 mitotic sister chromatid cohesion 1.48% (2/135) 5.54 0.000893 0.007576
GO:0006325 chromatin organization 2.96% (4/135) 3.25 0.000891 0.007651
GO:0000785 chromatin 2.22% (3/135) 3.91 0.001126 0.007807
GO:0044271 cellular nitrogen compound biosynthetic process 5.93% (8/135) 1.96 0.001146 0.007869
GO:0005515 protein binding 15.56% (21/135) 1.05 0.001125 0.007878
GO:0042393 histone binding 2.22% (3/135) 3.89 0.001159 0.007883
GO:0005635 nuclear envelope 1.48% (2/135) 5.32 0.0012 0.008013
GO:0016071 mRNA metabolic process 3.7% (5/135) 2.68 0.001192 0.008032
GO:0030234 enzyme regulator activity 3.7% (5/135) 2.65 0.00133 0.008798
GO:0090576 RNA polymerase III transcription regulator complex 1.48% (2/135) 5.21 0.001387 0.009093
GO:2001251 negative regulation of chromosome organization 1.48% (2/135) 5.2 0.001422 0.009234
GO:0006397 mRNA processing 2.96% (4/135) 3.06 0.001446 0.009308
GO:0018105 peptidyl-serine phosphorylation 2.22% (3/135) 3.76 0.00149 0.009424
GO:0018209 peptidyl-serine modification 2.22% (3/135) 3.76 0.00149 0.009424
GO:0007088 regulation of mitotic nuclear division 1.48% (2/135) 5.11 0.001599 0.00969
GO:1902099 regulation of metaphase/anaphase transition of cell cycle 1.48% (2/135) 5.11 0.001599 0.00969
GO:0010965 regulation of mitotic sister chromatid separation 1.48% (2/135) 5.11 0.001599 0.00969
GO:0030071 regulation of mitotic metaphase/anaphase transition 1.48% (2/135) 5.11 0.001599 0.00969
GO:1905818 regulation of chromosome separation 1.48% (2/135) 5.11 0.001599 0.00969
GO:0006259 DNA metabolic process 5.93% (8/135) 1.88 0.001628 0.00978
GO:0006811 monoatomic ion transport 3.7% (5/135) 2.55 0.001765 0.010181
GO:0098772 molecular function regulator activity 3.7% (5/135) 2.55 0.001757 0.010216
GO:0008308 voltage-gated monoatomic anion channel activity 1.48% (2/135) 5.04 0.001749 0.010251
GO:0004402 histone acetyltransferase activity 1.48% (2/135) 5.04 0.001749 0.010251
GO:1990234 transferase complex 4.44% (6/135) 2.26 0.001727 0.010292
GO:0061733 peptide-lysine-N-acetyltransferase activity 1.48% (2/135) 5.0 0.001865 0.010672
GO:0042254 ribosome biogenesis 1.48% (2/135) 4.96 0.001958 0.011029
GO:0004386 helicase activity 2.96% (4/135) 2.94 0.001945 0.011043
GO:0010639 negative regulation of organelle organization 1.48% (2/135) 4.95 0.001998 0.011084
GO:0004722 protein serine/threonine phosphatase activity 2.22% (3/135) 3.62 0.001987 0.011104
GO:0071824 protein-DNA complex organization 2.96% (4/135) 2.93 0.002028 0.011163
GO:0034212 peptide N-acetyltransferase activity 1.48% (2/135) 4.9 0.002122 0.011592
GO:0005253 monoatomic anion channel activity 1.48% (2/135) 4.87 0.002221 0.012041
GO:0072686 mitotic spindle 1.48% (2/135) 4.86 0.00225 0.012105
GO:0051129 negative regulation of cellular component organization 1.48% (2/135) 4.82 0.002366 0.012636
GO:0031491 nucleosome binding 1.48% (2/135) 4.8 0.002425 0.012856
GO:0097159 organic cyclic compound binding 23.7% (32/135) 0.72 0.00258 0.013579
GO:0033045 regulation of sister chromatid segregation 1.48% (2/135) 4.73 0.002684 0.014023
GO:0006820 monoatomic anion transport 1.48% (2/135) 4.71 0.002747 0.014248
GO:0000470 maturation of LSU-rRNA 1.48% (2/135) 4.64 0.003021 0.015449
GO:0051783 regulation of nuclear division 1.48% (2/135) 4.64 0.003021 0.015449
GO:0097036 regulation of plasma membrane sterol distribution 0.74% (1/135) 8.31 0.003141 0.015616
GO:0032541 cortical endoplasmic reticulum 0.74% (1/135) 8.31 0.003141 0.015616
GO:0008509 monoatomic anion transmembrane transporter activity 1.48% (2/135) 4.62 0.003121 0.015737
GO:0016407 acetyltransferase activity 2.22% (3/135) 3.37 0.003192 0.015762
GO:0051983 regulation of chromosome segregation 1.48% (2/135) 4.62 0.003104 0.015762
GO:0016043 cellular component organization 7.41% (10/135) 1.49 0.003295 0.016163
GO:0050896 response to stimulus 9.63% (13/135) 1.25 0.003429 0.016704
GO:0006950 response to stress 8.89% (12/135) 1.31 0.003549 0.017176
GO:0032774 RNA biosynthetic process 2.96% (4/135) 2.69 0.003681 0.017693
GO:0004721 phosphoprotein phosphatase activity 2.22% (3/135) 3.26 0.003994 0.01907
GO:0015075 monoatomic ion transmembrane transporter activity 3.7% (5/135) 2.26 0.004127 0.019449
GO:0018193 peptidyl-amino acid modification 2.96% (4/135) 2.64 0.00411 0.019495
GO:0032993 protein-DNA complex 2.22% (3/135) 3.23 0.004195 0.019642
GO:0008176 tRNA (guanine(46)-N7)-methyltransferase activity 0.74% (1/135) 7.87 0.00426 0.019815
GO:0140513 nuclear protein-containing complex 5.19% (7/135) 1.8 0.004329 0.020008
GO:0140034 methylation-dependent protein binding 0.74% (1/135) 7.73 0.004707 0.021212
GO:0035064 methylated histone binding 0.74% (1/135) 7.73 0.004707 0.021212
GO:0046983 protein dimerization activity 2.96% (4/135) 2.59 0.004637 0.021294
GO:0005840 ribosome 2.22% (3/135) 3.16 0.004783 0.021421
GO:1901991 negative regulation of mitotic cell cycle phase transition 1.48% (2/135) 4.31 0.004698 0.021436
GO:0015698 inorganic anion transport 1.48% (2/135) 4.29 0.004861 0.021636
GO:0005244 voltage-gated monoatomic ion channel activity 1.48% (2/135) 4.2 0.005477 0.024078
GO:0022832 voltage-gated channel activity 1.48% (2/135) 4.2 0.005477 0.024078
GO:0000822 inositol hexakisphosphate binding 0.74% (1/135) 7.48 0.005601 0.024476
GO:0051880 G-quadruplex DNA binding 0.74% (1/135) 7.37 0.006048 0.026269
GO:0031969 chloroplast membrane 1.48% (2/135) 4.11 0.006149 0.026547
GO:0015103 inorganic anion transmembrane transporter activity 1.48% (2/135) 4.1 0.006241 0.026786
GO:0034654 nucleobase-containing compound biosynthetic process 3.7% (5/135) 2.11 0.006369 0.027171
GO:0007093 mitotic cell cycle checkpoint signaling 1.48% (2/135) 4.05 0.006688 0.028367
GO:0033044 regulation of chromosome organization 1.48% (2/135) 4.02 0.006978 0.029083
GO:0007009 plasma membrane organization 0.74% (1/135) 7.17 0.006941 0.029095
GO:0005819 spindle 1.48% (2/135) 4.02 0.00693 0.029217
GO:1902494 catalytic complex 5.19% (7/135) 1.66 0.007151 0.029632
GO:0006302 double-strand break repair 2.22% (3/135) 2.93 0.007421 0.030228
GO:0000722 telomere maintenance via recombination 0.74% (1/135) 7.08 0.007387 0.030262
GO:0003735 structural constituent of ribosome 2.22% (3/135) 2.94 0.007352 0.030289
GO:1901990 regulation of mitotic cell cycle phase transition 1.48% (2/135) 3.95 0.007651 0.030989
GO:0044249 cellular biosynthetic process 7.41% (10/135) 1.3 0.008005 0.032243
GO:0043966 histone H3 acetylation 0.74% (1/135) 6.95 0.008056 0.032269
GO:0005694 chromosome 1.48% (2/135) 3.85 0.008725 0.034376
GO:0045930 negative regulation of mitotic cell cycle 1.48% (2/135) 3.86 0.008644 0.034434
GO:0090305 obsolete nucleic acid phosphodiester bond hydrolysis 0.74% (1/135) 6.83 0.008724 0.034562
GO:0071782 endoplasmic reticulum tubular network 0.74% (1/135) 6.8 0.008947 0.034869
GO:0098827 endoplasmic reticulum subcompartment 0.74% (1/135) 6.8 0.008947 0.034869
GO:0006352 DNA-templated transcription initiation 1.48% (2/135) 3.78 0.009608 0.036847
GO:0022613 ribonucleoprotein complex biogenesis 1.48% (2/135) 3.77 0.009664 0.036867
GO:0022625 cytosolic large ribosomal subunit 1.48% (2/135) 3.78 0.00958 0.036935
GO:0140657 ATP-dependent activity 5.19% (7/135) 1.58 0.009574 0.03711
GO:0032366 intracellular sterol transport 0.74% (1/135) 6.6 0.010282 0.038814
GO:0006412 translation 2.22% (3/135) 2.76 0.010262 0.03894
GO:1990882 rRNA acetylation 0.74% (1/135) 6.48 0.011171 0.040886
GO:1904812 rRNA acetylation involved in maturation of SSU-rRNA 0.74% (1/135) 6.48 0.011171 0.040886
GO:0031204 post-translational protein targeting to membrane, translocation 0.74% (1/135) 6.48 0.011171 0.040886
GO:1990884 RNA acetylation 0.74% (1/135) 6.48 0.011171 0.040886
GO:1990883 rRNA cytidine N-acetyltransferase activity 0.74% (1/135) 6.48 0.011171 0.040886
GO:0003682 chromatin binding 2.22% (3/135) 2.73 0.010901 0.040936
GO:0000075 cell cycle checkpoint signaling 1.48% (2/135) 3.65 0.011335 0.041274
GO:0004482 mRNA 5'-cap (guanine-N7-)-methyltransferase activity 0.74% (1/135) 6.42 0.011616 0.041875
GO:0006398 mRNA 3'-end processing by stem-loop binding and cleavage 0.74% (1/135) 6.42 0.011616 0.041875
GO:0043527 tRNA methyltransferase complex 0.74% (1/135) 6.39 0.011838 0.042463
GO:1990745 EARP complex 0.74% (1/135) 6.31 0.012504 0.043763
GO:0009648 photoperiodism 0.74% (1/135) 6.31 0.012504 0.043763
GO:0032922 circadian regulation of gene expression 0.74% (1/135) 6.31 0.012504 0.043763
GO:0043153 entrainment of circadian clock by photoperiod 0.74% (1/135) 6.31 0.012504 0.043763
GO:0008174 mRNA methyltransferase activity 0.74% (1/135) 6.34 0.012282 0.043837
GO:0036265 RNA (guanine-N7)-methylation 0.74% (1/135) 6.29 0.012726 0.044324
GO:0043043 peptide biosynthetic process 2.22% (3/135) 2.63 0.012924 0.044799
GO:0010948 negative regulation of cell cycle process 1.48% (2/135) 3.52 0.013415 0.04541
GO:1901988 negative regulation of cell cycle phase transition 1.48% (2/135) 3.52 0.013415 0.04541
GO:0032561 guanyl ribonucleotide binding 2.22% (3/135) 2.62 0.013294 0.045643
GO:0005525 GTP binding 2.22% (3/135) 2.62 0.013294 0.045643
GO:0003691 double-stranded telomeric DNA binding 0.74% (1/135) 6.21 0.013391 0.045757
GO:0070125 mitochondrial translational elongation 0.74% (1/135) 6.17 0.013834 0.046392
GO:1901576 organic substance biosynthetic process 7.41% (10/135) 1.18 0.013788 0.046455
GO:0015934 large ribosomal subunit 1.48% (2/135) 3.49 0.013943 0.04654
GO:0008173 RNA methyltransferase activity 1.48% (2/135) 3.49 0.014009 0.046547
GO:0009649 entrainment of circadian clock 0.74% (1/135) 6.12 0.014277 0.047219
GO:0019001 guanyl nucleotide binding 2.22% (3/135) 2.58 0.014389 0.047373
GO:2000028 regulation of photoperiodism, flowering 0.74% (1/135) 6.1 0.014499 0.047516
GO:0007346 regulation of mitotic cell cycle 1.48% (2/135) 3.46 0.014615 0.047679
GO:0030870 Mre11 complex 0.74% (1/135) 6.05 0.014941 0.048526
GO:0045786 negative regulation of cell cycle 1.48% (2/135) 3.43 0.015196 0.049133
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (135) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms