Coexpression cluster: Cluster_388 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016192 vesicle-mediated transport 26.15% (17/65) 5.0 0.0 0.0
GO:0098796 membrane protein complex 23.08% (15/65) 5.05 0.0 0.0
GO:0006897 endocytosis 13.85% (9/65) 6.84 0.0 0.0
GO:0006886 intracellular protein transport 18.46% (12/65) 5.11 0.0 0.0
GO:0030117 membrane coat 13.85% (9/65) 6.41 0.0 0.0
GO:0098657 import into cell 13.85% (9/65) 6.47 0.0 0.0
GO:0015031 protein transport 18.46% (12/65) 4.77 0.0 0.0
GO:0033036 macromolecule localization 20.0% (13/65) 4.42 0.0 0.0
GO:0070727 cellular macromolecule localization 20.0% (13/65) 4.42 0.0 0.0
GO:0008104 protein localization 20.0% (13/65) 4.42 0.0 0.0
GO:0045184 establishment of protein localization 18.46% (12/65) 4.46 0.0 0.0
GO:0046907 intracellular transport 18.46% (12/65) 4.31 0.0 0.0
GO:0051649 establishment of localization in cell 18.46% (12/65) 4.26 0.0 0.0
GO:0051641 cellular localization 20.0% (13/65) 3.92 0.0 0.0
GO:0030276 clathrin binding 9.23% (6/65) 7.3 0.0 0.0
GO:0032051 clathrin light chain binding 6.15% (4/65) 9.89 0.0 0.0
GO:0071439 clathrin complex 6.15% (4/65) 9.89 0.0 0.0
GO:0071705 nitrogen compound transport 18.46% (12/65) 4.04 0.0 0.0
GO:0006810 transport 27.69% (18/65) 2.9 0.0 0.0
GO:0051234 establishment of localization 27.69% (18/65) 2.83 0.0 0.0
GO:0051179 localization 27.69% (18/65) 2.78 0.0 0.0
GO:0071702 organic substance transport 18.46% (12/65) 3.71 0.0 0.0
GO:0032991 protein-containing complex 27.69% (18/65) 2.58 0.0 0.0
GO:0006099 tricarboxylic acid cycle 7.69% (5/65) 6.73 0.0 0.0
GO:0006898 receptor-mediated endocytosis 6.15% (4/65) 6.76 0.0 1e-06
GO:0005575 cellular_component 49.23% (32/65) 1.3 0.0 1e-06
GO:0009507 chloroplast 10.77% (7/65) 4.15 0.0 1e-06
GO:0009536 plastid 10.77% (7/65) 4.11 0.0 1e-06
GO:0008289 lipid binding 9.23% (6/65) 4.5 0.0 2e-06
GO:0030131 clathrin adaptor complex 4.62% (3/65) 7.82 0.0 3e-06
GO:0008964 phosphoenolpyruvate carboxylase activity 4.62% (3/65) 7.78 0.0 3e-06
GO:0015977 carbon fixation 4.62% (3/65) 7.68 0.0 3e-06
GO:0005783 endoplasmic reticulum 9.23% (6/65) 4.32 1e-06 4e-06
GO:0008250 oligosaccharyltransferase complex 4.62% (3/65) 7.45 1e-06 5e-06
GO:0004611 phosphoenolpyruvate carboxykinase activity 4.62% (3/65) 7.39 1e-06 6e-06
GO:0018279 protein N-linked glycosylation via asparagine 4.62% (3/65) 7.37 1e-06 6e-06
GO:0048366 leaf development 4.62% (3/65) 7.31 1e-06 6e-06
GO:0048827 phyllome development 4.62% (3/65) 7.31 1e-06 6e-06
GO:0030119 AP-type membrane coat adaptor complex 4.62% (3/65) 7.28 1e-06 6e-06
GO:0006106 fumarate metabolic process 3.08% (2/65) 10.09 2e-06 9e-06
GO:0004333 fumarate hydratase activity 3.08% (2/65) 10.09 2e-06 9e-06
GO:0043231 intracellular membrane-bounded organelle 26.15% (17/65) 1.9 2e-06 9e-06
GO:0043227 membrane-bounded organelle 26.15% (17/65) 1.89 2e-06 1e-05
GO:0030120 vesicle coat 6.15% (4/65) 5.52 2e-06 1.1e-05
GO:0043226 organelle 27.69% (18/65) 1.76 3e-06 1.5e-05
GO:0043229 intracellular organelle 27.69% (18/65) 1.76 3e-06 1.5e-05
GO:0005911 cell-cell junction 6.15% (4/65) 5.16 5e-06 2.6e-05
GO:0009506 plasmodesma 6.15% (4/65) 5.17 5e-06 2.6e-05
GO:0070161 anchoring junction 6.15% (4/65) 5.15 6e-06 2.6e-05
GO:0030054 cell junction 6.15% (4/65) 5.14 6e-06 2.6e-05
GO:0030130 clathrin coat of trans-Golgi network vesicle 3.08% (2/65) 9.05 7e-06 3e-05
GO:0030132 clathrin coat of coated pit 3.08% (2/65) 9.05 7e-06 3e-05
GO:0008150 biological_process 53.85% (35/65) 0.95 9e-06 3.8e-05
GO:0048046 apoplast 4.62% (3/65) 6.26 9e-06 3.9e-05
GO:0099402 plant organ development 4.62% (3/65) 6.1 1.3e-05 5.3e-05
GO:0006487 protein N-linked glycosylation 4.62% (3/65) 5.83 2.2e-05 9.1e-05
GO:0016829 lyase activity 7.69% (5/65) 3.87 2.6e-05 0.000103
GO:0030125 clathrin vesicle coat 3.08% (2/65) 7.67 4.7e-05 0.000182
GO:0030118 clathrin coat 3.08% (2/65) 7.67 4.7e-05 0.000182
GO:0016831 carboxy-lyase activity 4.62% (3/65) 5.16 8.9e-05 0.000339
GO:0045239 tricarboxylic acid cycle enzyme complex 3.08% (2/65) 7.16 9.4e-05 0.000354
GO:0009987 cellular process 38.46% (25/65) 1.06 0.000123 0.000446
GO:0140534 endoplasmic reticulum protein-containing complex 4.62% (3/65) 5.0 0.000122 0.000452
GO:0005794 Golgi apparatus 6.15% (4/65) 3.87 0.000172 0.000617
GO:0110165 cellular anatomical entity 36.92% (24/65) 1.06 0.000179 0.000631
GO:0005515 protein binding 21.54% (14/65) 1.52 0.000275 0.000953
GO:0005198 structural molecule activity 6.15% (4/65) 3.69 0.000279 0.000953
GO:0006108 malate metabolic process 3.08% (2/65) 6.32 0.000304 0.001023
GO:0016830 carbon-carbon lyase activity 4.62% (3/65) 4.48 0.00035 0.001163
GO:0032574 5'-3' RNA helicase activity 1.54% (1/65) 11.17 0.000433 0.001415
GO:0043413 macromolecule glycosylation 4.62% (3/65) 4.36 0.000445 0.001416
GO:0006486 protein glycosylation 4.62% (3/65) 4.36 0.000445 0.001416
GO:0005576 extracellular region 4.62% (3/65) 4.32 0.00048 0.001505
GO:0070085 glycosylation 4.62% (3/65) 4.27 0.000537 0.001661
GO:0048856 anatomical structure development 4.62% (3/65) 4.24 0.000563 0.001719
GO:0098797 plasma membrane protein complex 3.08% (2/65) 5.52 0.000912 0.002748
GO:0030126 COPI vesicle coat 3.08% (2/65) 5.38 0.001099 0.003267
GO:0048193 Golgi vesicle transport 4.62% (3/65) 3.85 0.001229 0.003608
GO:0035194 regulatory ncRNA-mediated post-transcriptional gene silencing 3.08% (2/65) 5.27 0.001276 0.003651
GO:0016441 post-transcriptional gene silencing 3.08% (2/65) 5.27 0.001276 0.003651
GO:0007010 cytoskeleton organization 4.62% (3/65) 3.76 0.001485 0.004198
GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum 3.08% (2/65) 5.11 0.00158 0.004412
GO:0032502 developmental process 4.62% (3/65) 3.63 0.001887 0.005207
GO:0006891 intra-Golgi vesicle-mediated transport 3.08% (2/65) 4.87 0.002212 0.00603
GO:0043186 P granule 1.54% (1/65) 8.78 0.002269 0.006113
GO:0005483 soluble NSF attachment protein activity 1.54% (1/65) 8.72 0.002377 0.006329
GO:0005488 binding 38.46% (25/65) 0.77 0.002827 0.00744
GO:0016836 hydro-lyase activity 3.08% (2/65) 4.65 0.002945 0.007663
GO:0035494 SNARE complex disassembly 1.54% (1/65) 7.97 0.003994 0.010278
GO:1902494 catalytic complex 7.69% (5/65) 2.23 0.004333 0.010784
GO:0031047 regulatory ncRNA-mediated gene silencing 3.08% (2/65) 4.37 0.004312 0.010851
GO:0043648 dicarboxylic acid metabolic process 3.08% (2/65) 4.37 0.004303 0.010948
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport 3.08% (2/65) 4.16 0.005758 0.014178
GO:0008092 cytoskeletal protein binding 4.62% (3/65) 2.95 0.007064 0.017209
GO:0003674 molecular_function 50.77% (33/65) 0.52 0.007682 0.018519
GO:0016835 carbon-oxygen lyase activity 3.08% (2/65) 3.88 0.00827 0.019728
GO:0051014 actin filament severing 1.54% (1/65) 6.29 0.012684 0.029945
GO:0005829 cytosol 6.15% (4/65) 2.12 0.013813 0.032277
GO:0010608 post-transcriptional regulation of gene expression 3.08% (2/65) 3.39 0.015766 0.036469
GO:0008017 microtubule binding 3.08% (2/65) 3.21 0.020085 0.045995
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (65) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms