Coexpression cluster: Cluster_258 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0110165 cellular anatomical entity 52.0% (39/75) 1.56 0.0 0.0
GO:0019318 hexose metabolic process 9.33% (7/75) 5.76 0.0 0.0
GO:0005996 monosaccharide metabolic process 9.33% (7/75) 5.41 0.0 0.0
GO:0005575 cellular_component 52.0% (39/75) 1.38 0.0 0.0
GO:0005777 peroxisome 8.0% (6/75) 5.88 0.0 0.0
GO:0016491 oxidoreductase activity 20.0% (15/75) 2.84 0.0 0.0
GO:0042579 microbody 8.0% (6/75) 5.36 0.0 0.0
GO:0006006 glucose metabolic process 6.67% (5/75) 5.9 0.0 1e-06
GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity 4.0% (3/75) 8.53 0.0 3e-06
GO:0043226 organelle 29.33% (22/75) 1.85 0.0 3e-06
GO:0043229 intracellular organelle 29.33% (22/75) 1.85 0.0 3e-06
GO:0005986 sucrose biosynthetic process 4.0% (3/75) 8.01 0.0 7e-06
GO:0015979 photosynthesis 5.33% (4/75) 6.13 0.0 1e-05
GO:0006000 fructose metabolic process 4.0% (3/75) 7.58 1e-06 1.5e-05
GO:0043231 intracellular membrane-bounded organelle 25.33% (19/75) 1.85 1e-06 1.6e-05
GO:0043227 membrane-bounded organelle 25.33% (19/75) 1.84 1e-06 1.7e-05
GO:0050308 sugar-phosphatase activity 4.0% (3/75) 7.49 1e-06 1.7e-05
GO:0030388 fructose 1,6-bisphosphate metabolic process 4.0% (3/75) 7.36 1e-06 1.8e-05
GO:0006002 fructose 6-phosphate metabolic process 4.0% (3/75) 7.11 2e-06 2.9e-05
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor 4.0% (3/75) 6.94 2e-06 4e-05
GO:2000026 regulation of multicellular organismal development 4.0% (3/75) 6.66 4e-06 6.4e-05
GO:0048580 regulation of post-embryonic development 4.0% (3/75) 6.67 4e-06 6.6e-05
GO:0010218 response to far red light 2.67% (2/75) 9.27 5e-06 7e-05
GO:0071489 cellular response to red or far red light 2.67% (2/75) 9.27 5e-06 7e-05
GO:0010017 red or far-red light signaling pathway 2.67% (2/75) 9.27 5e-06 7e-05
GO:0006094 gluconeogenesis 4.0% (3/75) 6.5 6e-06 7e-05
GO:0019319 hexose biosynthetic process 4.0% (3/75) 6.5 6e-06 7e-05
GO:0030288 outer membrane-bounded periplasmic space 2.67% (2/75) 9.21 5e-06 7.3e-05
GO:0055035 plastid thylakoid membrane 5.33% (4/75) 5.11 6e-06 7.4e-05
GO:0009535 chloroplast thylakoid membrane 5.33% (4/75) 5.11 6e-06 7.4e-05
GO:0046364 monosaccharide biosynthetic process 4.0% (3/75) 6.33 8e-06 9.1e-05
GO:0042651 thylakoid membrane 5.33% (4/75) 4.99 9e-06 9.4e-05
GO:0034357 photosynthetic membrane 5.33% (4/75) 4.99 9e-06 9.4e-05
GO:0010114 response to red light 2.67% (2/75) 8.84 9e-06 9.4e-05
GO:0051239 regulation of multicellular organismal process 4.0% (3/75) 6.24 1e-05 9.7e-05
GO:0042597 periplasmic space 2.67% (2/75) 8.76 1e-05 0.0001
GO:0010181 FMN binding 4.0% (3/75) 6.19 1.1e-05 0.000102
GO:0005829 cytosol 10.67% (8/75) 2.91 1.2e-05 0.000107
GO:0044281 small molecule metabolic process 13.33% (10/75) 2.49 1.2e-05 0.000107
GO:0046351 disaccharide biosynthetic process 4.0% (3/75) 6.03 1.5e-05 0.000131
GO:0005985 sucrose metabolic process 4.0% (3/75) 6.01 1.5e-05 0.000132
GO:0009312 oligosaccharide biosynthetic process 4.0% (3/75) 5.96 1.7e-05 0.000144
GO:0010099 regulation of photomorphogenesis 2.67% (2/75) 8.35 1.8e-05 0.000147
GO:0019203 carbohydrate phosphatase activity 4.0% (3/75) 5.75 2.7e-05 0.000214
GO:0042170 plastid membrane 5.33% (4/75) 4.49 3.3e-05 0.00026
GO:2000030 regulation of response to red or far red light 2.67% (2/75) 7.78 4e-05 0.000307
GO:0031968 organelle outer membrane 5.33% (4/75) 4.38 4.6e-05 0.000342
GO:0071482 cellular response to light stimulus 2.67% (2/75) 7.63 4.9e-05 0.000363
GO:0019867 outer membrane 5.33% (4/75) 4.31 5.5e-05 0.000395
GO:0050793 regulation of developmental process 4.0% (3/75) 5.32 6.4e-05 0.000448
GO:0003824 catalytic activity 37.33% (28/75) 1.04 6.6e-05 0.000459
GO:0071478 cellular response to radiation 2.67% (2/75) 7.37 7.1e-05 0.000481
GO:0005984 disaccharide metabolic process 4.0% (3/75) 5.1 9.9e-05 0.000614
GO:0071214 cellular response to abiotic stimulus 2.67% (2/75) 7.15 9.6e-05 0.000617
GO:0104004 cellular response to environmental stimulus 2.67% (2/75) 7.15 9.6e-05 0.000617
GO:0003978 UDP-glucose 4-epimerase activity 2.67% (2/75) 7.17 9.3e-05 0.000618
GO:0009507 chloroplast 6.67% (5/75) 3.46 9.9e-05 0.00062
GO:0015035 protein-disulfide reductase activity 2.67% (2/75) 7.09 0.000105 0.000638
GO:0004365 glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity 2.67% (2/75) 7.03 0.000114 0.000659
GO:0043891 glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) activity 2.67% (2/75) 7.03 0.000114 0.000659
GO:0009536 plastid 6.67% (5/75) 3.42 0.000112 0.000667
GO:0009311 oligosaccharide metabolic process 4.0% (3/75) 4.95 0.000137 0.000752
GO:0016651 oxidoreductase activity, acting on NAD(P)H 4.0% (3/75) 4.96 0.000133 0.000753
GO:0005975 carbohydrate metabolic process 9.33% (7/75) 2.64 0.000136 0.00076
GO:0098588 bounding membrane of organelle 6.67% (5/75) 3.3 0.000168 0.000908
GO:0000312 plastid small ribosomal subunit 1.33% (1/75) 11.97 0.00025 0.001331
GO:0019388 galactose catabolic process 2.67% (2/75) 6.39 0.000275 0.001422
GO:0033499 galactose catabolic process via UDP-galactose 2.67% (2/75) 6.39 0.000275 0.001422
GO:0009639 response to red or far red light 2.67% (2/75) 6.34 0.000295 0.001484
GO:0044283 small molecule biosynthetic process 6.67% (5/75) 3.12 0.000295 0.001504
GO:0009523 photosystem II 2.67% (2/75) 6.27 0.000322 0.001598
GO:0046365 monosaccharide catabolic process 2.67% (2/75) 6.16 0.000377 0.001818
GO:0019320 hexose catabolic process 2.67% (2/75) 6.16 0.000377 0.001818
GO:0015036 disulfide oxidoreductase activity 2.67% (2/75) 6.12 0.000401 0.001906
GO:0006012 galactose metabolic process 2.67% (2/75) 6.04 0.000447 0.002097
GO:0016853 isomerase activity 5.33% (4/75) 3.38 0.000623 0.002885
GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives 2.67% (2/75) 5.77 0.000642 0.002936
GO:0016854 racemase and epimerase activity 2.67% (2/75) 5.58 0.000842 0.003799
GO:0009521 photosystem 2.67% (2/75) 5.53 0.000902 0.004021
GO:0009579 thylakoid 2.67% (2/75) 5.41 0.001051 0.004568
GO:0031090 organelle membrane 6.67% (5/75) 2.71 0.001048 0.00461
GO:0003935 GTP cyclohydrolase II activity 1.33% (1/75) 9.16 0.001746 0.007495
GO:0003933 GTP cyclohydrolase activity 1.33% (1/75) 8.97 0.001995 0.008461
GO:0016667 oxidoreductase activity, acting on a sulfur group of donors 2.67% (2/75) 4.87 0.002204 0.009236
GO:0009069 serine family amino acid metabolic process 2.67% (2/75) 4.86 0.002236 0.009258
GO:0003755 peptidyl-prolyl cis-trans isomerase activity 2.67% (2/75) 4.73 0.002649 0.010841
GO:0010206 photosystem II repair 1.33% (1/75) 8.51 0.002742 0.011095
GO:0005737 cytoplasm 10.67% (8/75) 1.73 0.002871 0.011105
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor 2.67% (2/75) 4.69 0.002823 0.011166
GO:0044282 small molecule catabolic process 4.0% (3/75) 3.43 0.002803 0.011211
GO:0016630 protochlorophyllide reductase activity 1.33% (1/75) 8.44 0.002867 0.011212
GO:0016051 carbohydrate biosynthetic process 4.0% (3/75) 3.38 0.003121 0.01194
GO:0042549 photosystem II stabilization 1.33% (1/75) 7.92 0.00411 0.014185
GO:0009001 serine O-acetyltransferase activity 1.33% (1/75) 7.92 0.00411 0.014185
GO:0016412 serine O-acyltransferase activity 1.33% (1/75) 7.92 0.00411 0.014185
GO:0019464 glycine decarboxylation via glycine cleavage system 1.33% (1/75) 7.92 0.00411 0.014185
GO:0009249 protein lipoylation 1.33% (1/75) 7.92 0.00411 0.014185
GO:0005960 glycine cleavage complex 1.33% (1/75) 7.92 0.00411 0.014185
GO:0016859 cis-trans isomerase activity 2.67% (2/75) 4.47 0.003795 0.014363
GO:0008379 thioredoxin peroxidase activity 1.33% (1/75) 7.97 0.003986 0.014616
GO:0140824 thioredoxin-dependent peroxiredoxin activity 1.33% (1/75) 7.97 0.003986 0.014616
GO:0006546 glycine catabolic process 1.33% (1/75) 7.84 0.004359 0.014754
GO:0051920 peroxiredoxin activity 1.33% (1/75) 7.84 0.004359 0.014754
GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors 2.67% (2/75) 4.43 0.00398 0.014904
GO:0007165 signal transduction 6.67% (5/75) 2.22 0.004496 0.015073
GO:0030091 protein repair 1.33% (1/75) 7.68 0.004856 0.016126
GO:0051287 NAD binding 2.67% (2/75) 4.25 0.005097 0.016767
GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity 1.33% (1/75) 7.54 0.005353 0.017446
GO:0009416 response to light stimulus 2.67% (2/75) 4.18 0.005611 0.018119
GO:0046983 protein dimerization activity 4.0% (3/75) 3.02 0.006164 0.019723
GO:0009314 response to radiation 2.67% (2/75) 4.06 0.006522 0.020684
GO:0030941 chloroplast targeting sequence binding 1.33% (1/75) 7.24 0.006594 0.020723
GO:0000314 organellar small ribosomal subunit 1.33% (1/75) 7.01 0.007709 0.023803
GO:0005763 mitochondrial small ribosomal subunit 1.33% (1/75) 7.01 0.007709 0.023803
GO:0043467 regulation of generation of precursor metabolites and energy 1.33% (1/75) 6.92 0.008204 0.024896
GO:0042548 regulation of photosynthesis, light reaction 1.33% (1/75) 6.92 0.008204 0.024896
GO:0045944 positive regulation of transcription by RNA polymerase II 2.67% (2/75) 3.87 0.008429 0.02536
GO:0003674 molecular_function 49.33% (37/75) 0.48 0.008905 0.026565
GO:0016791 phosphatase activity 4.0% (3/75) 2.77 0.009957 0.029208
GO:0010109 regulation of photosynthesis 1.33% (1/75) 6.65 0.009936 0.029391
GO:0016560 protein import into peroxisome matrix, docking 1.33% (1/75) 6.58 0.01043 0.030343
GO:0009071 serine family amino acid catabolic process 1.33% (1/75) 6.56 0.010554 0.03045
GO:0019238 cyclohydrolase activity 1.33% (1/75) 6.49 0.011048 0.031616
GO:1990429 peroxisomal importomer complex 1.33% (1/75) 6.48 0.011171 0.031712
GO:0008152 metabolic process 26.67% (20/75) 0.73 0.012997 0.036598
GO:0006771 riboflavin metabolic process 1.33% (1/75) 6.21 0.013391 0.037114
GO:0009231 riboflavin biosynthetic process 1.33% (1/75) 6.21 0.013391 0.037114
GO:0045036 protein targeting to chloroplast 1.33% (1/75) 6.1 0.014498 0.039562
GO:0048583 regulation of response to stimulus 2.67% (2/75) 3.47 0.014389 0.039568
GO:0031359 obsolete integral component of chloroplast outer membrane 1.33% (1/75) 6.09 0.014622 0.039591
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific 2.67% (2/75) 3.38 0.016094 0.042593
GO:0042727 flavin-containing compound biosynthetic process 1.33% (1/75) 5.96 0.015974 0.042597
GO:0042726 flavin-containing compound metabolic process 1.33% (1/75) 5.96 0.015974 0.042597
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (75) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms