Coexpression cluster: Cluster_864 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0070274 RES complex 3.37% (3/89) 9.98 0.0 2e-06
GO:0005840 ribosome 6.74% (6/89) 4.76 0.0 2.4e-05
GO:0032991 protein-containing complex 19.1% (17/89) 2.04 1e-06 9e-05
GO:0009987 cellular process 39.33% (35/89) 1.09 3e-06 0.000356
GO:0005575 cellular_component 40.45% (36/89) 1.02 8e-06 0.00048
GO:0003735 structural constituent of ribosome 5.62% (5/89) 4.28 7e-06 0.000489
GO:0003674 molecular_function 57.3% (51/89) 0.7 2e-05 0.000491
GO:0004663 Rab geranylgeranyltransferase activity 2.25% (2/89) 8.81 9e-06 0.000499
GO:0043043 peptide biosynthetic process 5.62% (5/89) 3.97 1.9e-05 0.0005
GO:0034641 cellular nitrogen compound metabolic process 17.98% (16/89) 1.75 1.9e-05 0.000525
GO:0043170 macromolecule metabolic process 28.09% (25/89) 1.37 6e-06 0.000527
GO:1990904 ribonucleoprotein complex 7.87% (7/89) 3.19 1.3e-05 0.000543
GO:0016071 mRNA metabolic process 6.74% (6/89) 3.55 1.4e-05 0.000548
GO:0043228 non-membrane-bounded organelle 8.99% (8/89) 2.85 1.7e-05 0.000555
GO:0009059 macromolecule biosynthetic process 8.99% (8/89) 2.83 1.8e-05 0.000556
GO:0006412 translation 5.62% (5/89) 4.1 1.3e-05 0.000589
GO:0043232 intracellular non-membrane-bounded organelle 8.99% (8/89) 2.85 1.7e-05 0.000601
GO:0005968 Rab-protein geranylgeranyltransferase complex 2.25% (2/89) 8.05 2.8e-05 0.000614
GO:0004661 protein geranylgeranyltransferase activity 2.25% (2/89) 8.05 2.8e-05 0.000614
GO:0006807 nitrogen compound metabolic process 28.09% (25/89) 1.22 3.7e-05 0.000774
GO:0006518 peptide metabolic process 5.62% (5/89) 3.72 4.4e-05 0.000882
GO:0018344 protein geranylgeranylation 2.25% (2/89) 7.55 5.5e-05 0.001061
GO:0043604 amide biosynthetic process 5.62% (5/89) 3.58 6.8e-05 0.001111
GO:0005684 U2-type spliceosomal complex 3.37% (3/89) 5.34 6.2e-05 0.001143
GO:0008318 protein prenyltransferase activity 2.25% (2/89) 7.4 6.8e-05 0.001154
GO:0005198 structural molecule activity 5.62% (5/89) 3.56 7.4e-05 0.001157
GO:0008150 biological_process 47.19% (42/89) 0.76 7.8e-05 0.001184
GO:0044271 cellular nitrogen compound biosynthetic process 8.99% (8/89) 2.56 6.7e-05 0.001192
GO:0005546 phosphatidylinositol-4,5-bisphosphate binding 3.37% (3/89) 5.06 0.000109 0.001493
GO:0097354 prenylation 2.25% (2/89) 7.06 0.000108 0.001533
GO:0018342 protein prenylation 2.25% (2/89) 7.06 0.000108 0.001533
GO:0022625 cytosolic large ribosomal subunit 3.37% (3/89) 4.96 0.000133 0.001761
GO:1902936 phosphatidylinositol bisphosphate binding 3.37% (3/89) 4.94 0.000138 0.001778
GO:0000145 exocyst 3.37% (3/89) 4.9 0.00015 0.001876
GO:1901981 phosphatidylinositol phosphate binding 3.37% (3/89) 4.83 0.000174 0.002112
GO:0006887 exocytosis 3.37% (3/89) 4.79 0.000188 0.002209
GO:0044238 primary metabolic process 29.21% (26/89) 1.02 0.000241 0.002688
GO:0015934 large ribosomal subunit 3.37% (3/89) 4.68 0.000237 0.002717
GO:0043603 amide metabolic process 5.62% (5/89) 3.16 0.000263 0.00286
GO:0032940 secretion by cell 3.37% (3/89) 4.56 0.000303 0.003208
GO:0016070 RNA metabolic process 10.11% (9/89) 2.06 0.000322 0.003332
GO:0005267 potassium channel activity 2.25% (2/89) 6.21 0.000351 0.003383
GO:0046903 secretion 3.37% (3/89) 4.5 0.000338 0.003409
GO:0005249 voltage-gated potassium channel activity 2.25% (2/89) 6.22 0.000347 0.003424
GO:0000993 RNA polymerase II complex binding 2.25% (2/89) 6.08 0.000423 0.003903
GO:0035091 phosphatidylinositol binding 3.37% (3/89) 4.4 0.000415 0.003914
GO:0022843 voltage-gated monoatomic cation channel activity 2.25% (2/89) 5.97 0.000489 0.004145
GO:0044237 cellular metabolic process 24.72% (22/89) 1.08 0.000502 0.004175
GO:0031976 plastid thylakoid 2.25% (2/89) 5.98 0.000484 0.004191
GO:0009534 chloroplast thylakoid 2.25% (2/89) 5.98 0.000484 0.004191
GO:0140352 export from cell 3.37% (3/89) 4.33 0.000481 0.004342
GO:0006368 transcription elongation by RNA polymerase II 2.25% (2/89) 5.87 0.000564 0.004509
GO:0008152 metabolic process 30.34% (27/89) 0.92 0.000556 0.004537
GO:0043175 RNA polymerase core enzyme binding 2.25% (2/89) 5.78 0.000633 0.004795
GO:0071704 organic substance metabolic process 29.21% (26/89) 0.93 0.000625 0.004815
GO:0006354 DNA-templated transcription elongation 2.25% (2/89) 5.8 0.000623 0.004892
GO:0002181 cytoplasmic translation 2.25% (2/89) 5.68 0.000729 0.00542
GO:0000398 mRNA splicing, via spliceosome 3.37% (3/89) 4.09 0.000767 0.005609
GO:0070063 RNA polymerase binding 2.25% (2/89) 5.59 0.000825 0.005927
GO:0090304 nucleic acid metabolic process 12.36% (11/89) 1.63 0.000854 0.005937
GO:0099023 vesicle tethering complex 3.37% (3/89) 4.04 0.000848 0.005993
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 3.37% (3/89) 4.02 0.000896 0.006131
GO:0070585 protein localization to mitochondrion 2.25% (2/89) 5.5 0.000933 0.00618
GO:0072655 establishment of protein localization to mitochondrion 2.25% (2/89) 5.5 0.000933 0.00618
GO:0004659 prenyltransferase activity 2.25% (2/89) 5.41 0.001054 0.006571
GO:0001098 basal transcription machinery binding 2.25% (2/89) 5.42 0.001047 0.006627
GO:0001099 basal RNA polymerase II transcription machinery binding 2.25% (2/89) 5.42 0.001047 0.006627
GO:0044391 ribosomal subunit 3.37% (3/89) 3.95 0.001032 0.006731
GO:0000375 RNA splicing, via transesterification reactions 3.37% (3/89) 3.9 0.001124 0.006908
GO:0006626 protein targeting to mitochondrion 1.12% (1/89) 9.72 0.001184 0.007173
GO:0005543 phospholipid binding 3.37% (3/89) 3.86 0.001214 0.007251
GO:0016282 eukaryotic 43S preinitiation complex 1.12% (1/89) 9.55 0.001332 0.007737
GO:0045038 protein import into chloroplast thylakoid membrane 1.12% (1/89) 9.55 0.001332 0.007737
GO:0044249 cellular biosynthetic process 10.11% (9/89) 1.75 0.001481 0.008261
GO:0140096 catalytic activity, acting on a protein 14.61% (13/89) 1.37 0.001452 0.008319
GO:0009579 thylakoid 2.25% (2/89) 5.17 0.001475 0.008338
GO:0005681 spliceosomal complex 3.37% (3/89) 3.75 0.001519 0.008366
GO:0008023 transcription elongation factor complex 2.25% (2/89) 5.11 0.001585 0.008615
GO:0008380 RNA splicing 3.37% (3/89) 3.67 0.001772 0.009393
GO:0019538 protein metabolic process 15.73% (14/89) 1.28 0.001762 0.009459
GO:0000381 regulation of alternative mRNA splicing, via spliceosome 1.12% (1/89) 8.91 0.002071 0.010843
GO:0043226 organelle 17.98% (16/89) 1.14 0.002145 0.010959
GO:0043229 intracellular organelle 17.98% (16/89) 1.14 0.002143 0.011081
GO:0140513 nuclear protein-containing complex 6.74% (6/89) 2.18 0.002224 0.011224
GO:0042788 polysomal ribosome 1.12% (1/89) 8.72 0.002367 0.011807
GO:0022832 voltage-gated channel activity 2.25% (2/89) 4.8 0.00243 0.011842
GO:0005244 voltage-gated monoatomic ion channel activity 2.25% (2/89) 4.8 0.00243 0.011842
GO:0006457 protein folding 3.37% (3/89) 3.5 0.00246 0.011855
GO:1901576 organic substance biosynthetic process 10.11% (9/89) 1.63 0.002608 0.012423
GO:0070993 translation preinitiation complex 1.12% (1/89) 8.4 0.002958 0.013935
GO:0032451 demethylase activity 2.25% (2/89) 4.64 0.003008 0.014015
GO:0006139 nucleobase-containing compound metabolic process 12.36% (11/89) 1.4 0.003049 0.014051
GO:0035241 protein-arginine omega-N monomethyltransferase activity 1.12% (1/89) 8.2 0.003401 0.015505
GO:0005261 monoatomic cation channel activity 2.25% (2/89) 4.52 0.003526 0.015905
GO:0009058 biosynthetic process 10.11% (9/89) 1.55 0.003668 0.016372
GO:0006397 mRNA processing 3.37% (3/89) 3.25 0.004036 0.017824
GO:0072594 establishment of protein localization to organelle 3.37% (3/89) 3.24 0.004125 0.018033
GO:0017095 heparan sulfate 6-O-sulfotransferase activity 1.12% (1/89) 7.81 0.004434 0.01843
GO:0015015 heparan sulfate proteoglycan biosynthetic process, enzymatic modification 1.12% (1/89) 7.81 0.004434 0.01843
GO:0006029 proteoglycan metabolic process 1.12% (1/89) 7.81 0.004434 0.01843
GO:0030201 heparan sulfate proteoglycan metabolic process 1.12% (1/89) 7.81 0.004434 0.01843
GO:0034483 heparan sulfate sulfotransferase activity 1.12% (1/89) 7.81 0.004434 0.01843
GO:0004366 glycerol-3-phosphate O-acyltransferase activity 1.12% (1/89) 7.68 0.004876 0.020072
GO:0090150 establishment of protein localization to membrane 2.25% (2/89) 4.23 0.005211 0.020459
GO:1901566 organonitrogen compound biosynthetic process 5.62% (5/89) 2.18 0.005178 0.02052
GO:0033365 protein localization to organelle 3.37% (3/89) 3.12 0.005135 0.020538
GO:0046483 heterocycle metabolic process 12.36% (11/89) 1.3 0.005106 0.020618
GO:0110165 cellular anatomical entity 29.21% (26/89) 0.73 0.005101 0.020796
GO:0003676 nucleic acid binding 14.61% (13/89) 1.15 0.005408 0.021037
GO:0008289 lipid binding 3.37% (3/89) 3.05 0.005942 0.022905
GO:0006725 cellular aromatic compound metabolic process 12.36% (11/89) 1.26 0.006041 0.023074
GO:0016192 vesicle-mediated transport 4.49% (4/89) 2.46 0.006322 0.023932
GO:1901360 organic cyclic compound metabolic process 12.36% (11/89) 1.22 0.007443 0.027929
GO:0051234 establishment of localization 10.11% (9/89) 1.38 0.007747 0.028814
GO:0051082 unfolded protein binding 2.25% (2/89) 3.91 0.007998 0.029487
GO:0005737 cytoplasm 8.99% (8/89) 1.48 0.008109 0.029641
GO:0032774 RNA biosynthetic process 3.37% (3/89) 2.87 0.008252 0.029904
GO:0080009 mRNA methylation 1.12% (1/89) 6.89 0.008407 0.029956
GO:0005783 endoplasmic reticulum 3.37% (3/89) 2.86 0.008374 0.030088
GO:1901702 salt transmembrane transporter activity 3.37% (3/89) 2.85 0.008612 0.030428
GO:0072657 protein localization to membrane 2.25% (2/89) 3.82 0.00898 0.030459
GO:0032978 protein insertion into membrane from inner side 1.12% (1/89) 6.81 0.008848 0.0305
GO:0051204 protein insertion into mitochondrial membrane 1.12% (1/89) 6.81 0.008848 0.0305
GO:0032979 protein insertion into mitochondrial inner membrane from matrix 1.12% (1/89) 6.81 0.008848 0.0305
GO:0004842 ubiquitin-protein transferase activity 3.37% (3/89) 2.83 0.008922 0.030506
GO:0051179 localization 10.11% (9/89) 1.33 0.009716 0.032439
GO:0019787 ubiquitin-like protein transferase activity 3.37% (3/89) 2.78 0.009809 0.032493
GO:0008237 metallopeptidase activity 2.25% (2/89) 3.74 0.010051 0.032531
GO:0015079 potassium ion transmembrane transporter activity 2.25% (2/89) 3.77 0.009713 0.032684
GO:0042797 tRNA transcription by RNA polymerase III 1.12% (1/89) 6.63 0.010022 0.032687
GO:0009304 tRNA transcription 1.12% (1/89) 6.63 0.010022 0.032687
GO:0006813 potassium ion transport 2.25% (2/89) 3.73 0.010222 0.032834
GO:0016755 aminoacyltransferase activity 3.37% (3/89) 2.75 0.010438 0.033275
GO:0005488 binding 33.71% (30/89) 0.58 0.010691 0.03383
GO:0010207 photosystem II assembly 1.12% (1/89) 6.51 0.010901 0.034238
GO:0022836 gated channel activity 2.25% (2/89) 3.65 0.011375 0.035463
GO:0006402 mRNA catabolic process 2.25% (2/89) 3.62 0.011738 0.036327
GO:0009725 response to hormone 2.25% (2/89) 3.6 0.012023 0.036941
GO:0017038 protein import 1.12% (1/89) 6.25 0.013097 0.039949
GO:0045037 protein import into chloroplast stroma 1.12% (1/89) 6.17 0.013827 0.041877
GO:0032977 membrane insertase activity 1.12% (1/89) 6.14 0.01412 0.04216
GO:0003723 RNA binding 6.74% (6/89) 1.61 0.014047 0.042242
GO:1901564 organonitrogen compound metabolic process 15.73% (14/89) 0.92 0.014747 0.043724
GO:0009719 response to endogenous stimulus 2.25% (2/89) 3.44 0.014931 0.043964
GO:0005832 chaperonin-containing T-complex 1.12% (1/89) 5.99 0.015579 0.045555
GO:0051668 localization within membrane 2.25% (2/89) 3.39 0.015961 0.046352
GO:0006401 RNA catabolic process 2.25% (2/89) 3.38 0.016147 0.046574
GO:0090151 establishment of protein localization to mitochondrial membrane 1.12% (1/89) 5.93 0.016308 0.04672
GO:0140597 protein carrier chaperone 1.12% (1/89) 5.86 0.017036 0.048479
GO:0007007 inner mitochondrial membrane organization 1.12% (1/89) 5.84 0.017327 0.048654
GO:0101031 protein folding chaperone complex 1.12% (1/89) 5.84 0.017327 0.048654
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (89) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms