Coexpression cluster: Cluster_530 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003979 UDP-glucose 6-dehydrogenase activity 4.55% (4/88) 9.98 0.0 0.0
GO:0051287 NAD binding 7.95% (7/88) 5.83 0.0 0.0
GO:0006024 glycosaminoglycan biosynthetic process 4.55% (4/88) 8.83 0.0 0.0
GO:0006023 aminoglycan biosynthetic process 4.55% (4/88) 8.83 0.0 0.0
GO:0005459 UDP-galactose transmembrane transporter activity 4.55% (4/88) 8.61 0.0 0.0
GO:0030203 glycosaminoglycan metabolic process 4.55% (4/88) 7.96 0.0 0.0
GO:2000280 regulation of root development 3.41% (3/88) 8.93 0.0 2e-06
GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity 4.55% (4/88) 6.94 0.0 2e-06
GO:0005338 nucleotide-sugar transmembrane transporter activity 4.55% (4/88) 6.63 0.0 3e-06
GO:0006022 aminoglycan metabolic process 4.55% (4/88) 6.7 0.0 3e-06
GO:0010497 plasmodesmata-mediated intercellular transport 3.41% (3/88) 8.46 0.0 3e-06
GO:0009834 plant-type secondary cell wall biogenesis 4.55% (4/88) 6.53 0.0 3e-06
GO:0010496 intercellular transport 3.41% (3/88) 7.98 0.0 6e-06
GO:0042732 D-xylose metabolic process 3.41% (3/88) 7.8 0.0 8e-06
GO:0048040 UDP-glucuronate decarboxylase activity 3.41% (3/88) 7.8 0.0 8e-06
GO:0140527 reciprocal homologous recombination 4.55% (4/88) 5.95 1e-06 1.2e-05
GO:0035825 homologous recombination 4.55% (4/88) 5.95 1e-06 1.2e-05
GO:0007131 reciprocal meiotic recombination 4.55% (4/88) 5.95 1e-06 1.2e-05
GO:0010413 glucuronoxylan metabolic process 3.41% (3/88) 7.14 1e-06 2.4e-05
GO:0010417 glucuronoxylan biosynthetic process 3.41% (3/88) 7.14 1e-06 2.4e-05
GO:0070403 NAD+ binding 3.41% (3/88) 7.01 2e-06 3e-05
GO:1901505 carbohydrate derivative transmembrane transporter activity 4.55% (4/88) 5.5 2e-06 3.2e-05
GO:0015932 nucleobase-containing compound transmembrane transporter activity 4.55% (4/88) 5.39 3e-06 4.1e-05
GO:0004467 long-chain fatty acid-CoA ligase activity 3.41% (3/88) 6.74 3e-06 4.4e-05
GO:0071704 organic substance metabolic process 35.23% (31/88) 1.2 3e-06 4.4e-05
GO:0019321 pentose metabolic process 3.41% (3/88) 6.64 4e-06 5.2e-05
GO:0003824 catalytic activity 38.64% (34/88) 1.09 5e-06 5.8e-05
GO:0000271 polysaccharide biosynthetic process 5.68% (5/88) 4.37 5e-06 5.8e-05
GO:0030145 manganese ion binding 3.41% (3/88) 6.35 8e-06 8.6e-05
GO:0071554 cell wall organization or biogenesis 5.68% (5/88) 4.22 8e-06 9.1e-05
GO:0008152 metabolic process 35.23% (31/88) 1.13 9e-06 9.4e-05
GO:0015645 fatty acid ligase activity 3.41% (3/88) 6.23 1e-05 9.8e-05
GO:0045492 xylan biosynthetic process 3.41% (3/88) 6.18 1.1e-05 0.000107
GO:0009832 plant-type cell wall biogenesis 4.55% (4/88) 4.75 1.7e-05 0.000161
GO:0016878 acid-thiol ligase activity 3.41% (3/88) 5.93 1.8e-05 0.000169
GO:0016051 carbohydrate biosynthetic process 5.68% (5/88) 3.89 2.5e-05 0.000225
GO:0071669 plant-type cell wall organization or biogenesis 4.55% (4/88) 4.54 3e-05 0.00026
GO:0042546 cell wall biogenesis 4.55% (4/88) 4.51 3.2e-05 0.000274
GO:0005976 polysaccharide metabolic process 5.68% (5/88) 3.78 3.5e-05 0.000291
GO:1903046 meiotic cell cycle process 4.55% (4/88) 4.46 3.7e-05 0.000294
GO:0045491 xylan metabolic process 3.41% (3/88) 5.52 4.3e-05 0.00033
GO:0005618 cell wall 4.55% (4/88) 4.4 4.3e-05 0.000337
GO:0030312 external encapsulating structure 4.55% (4/88) 4.35 4.9e-05 0.000366
GO:0005975 carbohydrate metabolic process 9.09% (8/88) 2.6 5.5e-05 0.000405
GO:0044238 primary metabolic process 30.68% (27/88) 1.09 7.4e-05 0.000518
GO:0016405 CoA-ligase activity 3.41% (3/88) 5.26 7.2e-05 0.000518
GO:0016408 C-acyltransferase activity 2.27% (2/88) 7.29 7.9e-05 0.000539
GO:0070592 cell wall polysaccharide biosynthetic process 3.41% (3/88) 5.19 8.5e-05 0.000567
GO:1901564 organonitrogen compound metabolic process 21.59% (19/88) 1.38 9.3e-05 0.000611
GO:0050793 regulation of developmental process 3.41% (3/88) 5.09 0.000103 0.000647
GO:0015297 antiporter activity 4.55% (4/88) 4.08 0.000101 0.000651
GO:0008150 biological_process 46.59% (41/88) 0.74 0.000135 0.000818
GO:0009059 macromolecule biosynthetic process 7.95% (7/88) 2.66 0.000133 0.000823
GO:0010410 hemicellulose metabolic process 3.41% (3/88) 4.92 0.000144 0.00086
GO:0043170 macromolecule metabolic process 25.0% (22/88) 1.2 0.000148 0.000868
GO:0044237 cellular metabolic process 26.14% (23/88) 1.16 0.000157 0.000902
GO:0110165 cellular anatomical entity 34.09% (30/88) 0.95 0.000162 0.000913
GO:0044085 cellular component biogenesis 4.55% (4/88) 3.87 0.000176 0.000975
GO:0003674 molecular_function 54.55% (48/88) 0.63 0.00018 0.000984
GO:0016831 carboxy-lyase activity 3.41% (3/88) 4.72 0.000219 0.001154
GO:0010383 cell wall polysaccharide metabolic process 3.41% (3/88) 4.72 0.000216 0.00116
GO:0022414 reproductive process 4.55% (4/88) 3.78 0.000226 0.001175
GO:0006807 nitrogen compound metabolic process 26.14% (23/88) 1.11 0.00024 0.001227
GO:0006310 DNA recombination 4.55% (4/88) 3.74 0.000248 0.00125
GO:0015291 secondary active transmembrane transporter activity 4.55% (4/88) 3.72 0.000261 0.001295
GO:0016877 ligase activity, forming carbon-sulfur bonds 3.41% (3/88) 4.56 0.000302 0.001472
GO:0009987 cellular process 34.09% (30/88) 0.89 0.000342 0.001642
GO:0044036 cell wall macromolecule metabolic process 3.41% (3/88) 4.49 0.000349 0.001655
GO:0005911 cell-cell junction 3.41% (3/88) 4.31 0.0005 0.002299
GO:0009506 plasmodesma 3.41% (3/88) 4.32 0.000493 0.0023
GO:0070161 anchoring junction 3.41% (3/88) 4.3 0.000508 0.002305
GO:0030054 cell junction 3.41% (3/88) 4.29 0.000521 0.00233
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 4.55% (4/88) 3.43 0.000557 0.002425
GO:0005794 Golgi apparatus 4.55% (4/88) 3.43 0.00055 0.002426
GO:0030554 adenyl nucleotide binding 17.05% (15/88) 1.37 0.000597 0.002561
GO:0005575 cellular_component 35.23% (31/88) 0.82 0.000624 0.002642
GO:1901137 carbohydrate derivative biosynthetic process 4.55% (4/88) 3.31 0.00075 0.003135
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors 4.55% (4/88) 3.29 0.000786 0.003243
GO:0044242 cellular lipid catabolic process 3.41% (3/88) 4.04 0.000852 0.003428
GO:0016830 carbon-carbon lyase activity 3.41% (3/88) 4.04 0.00085 0.003464
GO:0016042 lipid catabolic process 3.41% (3/88) 3.99 0.000939 0.003733
GO:0005996 monosaccharide metabolic process 3.41% (3/88) 3.96 0.000999 0.003922
GO:0017076 purine nucleotide binding 17.05% (15/88) 1.29 0.001045 0.004053
GO:0043413 macromolecule glycosylation 3.41% (3/88) 3.92 0.001077 0.004079
GO:0006486 protein glycosylation 3.41% (3/88) 3.92 0.001077 0.004079
GO:0043231 intracellular membrane-bounded organelle 17.05% (15/88) 1.28 0.00115 0.004305
GO:0043227 membrane-bounded organelle 17.05% (15/88) 1.27 0.001239 0.004587
GO:0070085 glycosylation 3.41% (3/88) 3.83 0.001295 0.004737
GO:0036211 protein modification process 13.64% (12/88) 1.46 0.001365 0.004939
GO:0022804 active transmembrane transporter activity 5.68% (5/88) 2.6 0.001485 0.005314
GO:0019538 protein metabolic process 15.91% (14/88) 1.29 0.001578 0.005584
GO:0000166 nucleotide binding 17.05% (15/88) 1.23 0.00164 0.005677
GO:1901265 nucleoside phosphate binding 17.05% (15/88) 1.23 0.00164 0.005677
GO:0009395 phospholipid catabolic process 2.27% (2/88) 5.02 0.001801 0.00617
GO:1901363 heterocyclic compound binding 17.05% (15/88) 1.19 0.002137 0.007243
GO:0036094 small molecule binding 17.05% (15/88) 1.18 0.00228 0.007647
GO:0016740 transferase activity 17.05% (15/88) 1.14 0.003037 0.01008
GO:0006805 xenobiotic metabolic process 1.14% (1/88) 8.09 0.003655 0.011768
GO:0010124 phenylacetate catabolic process 1.14% (1/88) 8.09 0.003655 0.011768
GO:0042178 xenobiotic catabolic process 1.14% (1/88) 8.09 0.003655 0.011768
GO:0043412 macromolecule modification 13.64% (12/88) 1.27 0.003864 0.01232
GO:0022402 cell cycle process 4.55% (4/88) 2.62 0.004272 0.013487
GO:0031211 endoplasmic reticulum palmitoyltransferase complex 1.14% (1/88) 7.74 0.004676 0.01407
GO:0002178 palmitoyltransferase complex 1.14% (1/88) 7.74 0.004676 0.01407
GO:0004758 serine C-palmitoyltransferase activity 1.14% (1/88) 7.74 0.004676 0.01407
GO:0017059 serine C-palmitoyltransferase complex 1.14% (1/88) 7.74 0.004676 0.01407
GO:0016454 C-palmitoyltransferase activity 1.14% (1/88) 7.74 0.004676 0.01407
GO:1901566 organonitrogen compound biosynthetic process 5.68% (5/88) 2.19 0.004937 0.014453
GO:0043226 organelle 17.05% (15/88) 1.06 0.004893 0.014454
GO:0043229 intracellular organelle 17.05% (15/88) 1.06 0.004888 0.014575
GO:0044249 cellular biosynthetic process 9.09% (8/88) 1.59 0.00514 0.014912
GO:0006468 protein phosphorylation 9.09% (8/88) 1.57 0.005734 0.016484
GO:0006796 phosphate-containing compound metabolic process 11.36% (10/88) 1.34 0.006064 0.01728
GO:0006793 phosphorus metabolic process 11.36% (10/88) 1.33 0.006307 0.017814
GO:0016310 phosphorylation 9.09% (8/88) 1.52 0.006843 0.01916
GO:0004672 protein kinase activity 9.09% (8/88) 1.52 0.007023 0.019495
GO:0004364 glutathione transferase activity 2.27% (2/88) 3.99 0.007186 0.019777
GO:0009959 negative gravitropism 1.14% (1/88) 7.09 0.007296 0.01991
GO:1901135 carbohydrate derivative metabolic process 4.55% (4/88) 2.38 0.007647 0.020693
GO:0003988 acetyl-CoA C-acyltransferase activity 1.14% (1/88) 6.96 0.008023 0.021528
GO:0005783 endoplasmic reticulum 3.41% (3/88) 2.88 0.008119 0.021605
GO:1901576 organic substance biosynthetic process 9.09% (8/88) 1.47 0.008354 0.022049
GO:0006749 glutathione metabolic process 2.27% (2/88) 3.75 0.009892 0.025895
GO:0140096 catalytic activity, acting on a protein 12.5% (11/88) 1.15 0.010617 0.027132
GO:0070001 aspartic-type peptidase activity 2.27% (2/88) 3.7 0.01059 0.02728
GO:0004190 aspartic-type endopeptidase activity 2.27% (2/88) 3.7 0.01059 0.02728
GO:0055038 recycling endosome membrane 1.14% (1/88) 6.47 0.011214 0.02821
GO:0009058 biosynthetic process 9.09% (8/88) 1.4 0.011186 0.028362
GO:0016829 lyase activity 3.41% (3/88) 2.7 0.011469 0.028629
GO:0016773 phosphotransferase activity, alcohol group as acceptor 9.09% (8/88) 1.36 0.012731 0.031535
GO:0032588 trans-Golgi network membrane 1.14% (1/88) 6.23 0.013239 0.032543
GO:0009629 response to gravity 1.14% (1/88) 5.98 0.015694 0.037995
GO:0009630 gravitropism 1.14% (1/88) 5.98 0.015694 0.037995
GO:0016301 kinase activity 9.09% (8/88) 1.3 0.016035 0.038532
GO:0046434 organophosphate catabolic process 2.27% (2/88) 3.26 0.018774 0.044781
GO:0046513 ceramide biosynthetic process 1.14% (1/88) 5.63 0.020009 0.047376
GO:0016874 ligase activity 3.41% (3/88) 2.38 0.020454 0.048075
GO:0016174 NAD(P)H oxidase H2O2-forming activity 1.14% (1/88) 5.57 0.020871 0.048698
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (88) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms