Coexpression cluster: Cluster_569 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0044391 ribosomal subunit 8.16% (12/147) 5.22 0.0 0.0
GO:0003735 structural constituent of ribosome 8.84% (13/147) 4.93 0.0 0.0
GO:0005198 structural molecule activity 8.84% (13/147) 4.21 0.0 0.0
GO:0006518 peptide metabolic process 8.16% (12/147) 4.26 0.0 0.0
GO:0006412 translation 7.48% (11/147) 4.51 0.0 0.0
GO:0022625 cytosolic large ribosomal subunit 5.44% (8/147) 5.66 0.0 0.0
GO:0043043 peptide biosynthetic process 7.48% (11/147) 4.39 0.0 0.0
GO:0015934 large ribosomal subunit 5.44% (8/147) 5.37 0.0 0.0
GO:1990904 ribonucleoprotein complex 9.52% (14/147) 3.47 0.0 0.0
GO:0043604 amide biosynthetic process 7.48% (11/147) 3.99 0.0 0.0
GO:0005840 ribosome 6.12% (9/147) 4.63 0.0 0.0
GO:0043603 amide metabolic process 8.16% (12/147) 3.7 0.0 0.0
GO:0003676 nucleic acid binding 21.77% (32/147) 1.73 0.0 0.0
GO:0003723 RNA binding 12.24% (18/147) 2.47 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 9.52% (14/147) 2.94 0.0 0.0
GO:0002181 cytoplasmic translation 3.4% (5/147) 6.28 0.0 0.0
GO:0016174 NAD(P)H oxidase H2O2-forming activity 2.72% (4/147) 6.83 0.0 2e-06
GO:0032991 protein-containing complex 16.33% (24/147) 1.82 0.0 2e-06
GO:0043226 organelle 22.45% (33/147) 1.46 0.0 2e-06
GO:0044271 cellular nitrogen compound biosynthetic process 9.52% (14/147) 2.65 0.0 2e-06
GO:0043229 intracellular organelle 22.45% (33/147) 1.46 0.0 2e-06
GO:0034641 cellular nitrogen compound metabolic process 17.69% (26/147) 1.73 0.0 2e-06
GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor 2.72% (4/147) 6.51 0.0 3e-06
GO:0009059 macromolecule biosynthetic process 8.16% (12/147) 2.69 0.0 1e-05
GO:0005575 cellular_component 37.41% (55/147) 0.9 1e-06 1.6e-05
GO:0042752 regulation of circadian rhythm 2.04% (3/147) 6.53 5e-06 0.000106
GO:0015935 small ribosomal subunit 2.72% (4/147) 4.96 1e-05 0.000177
GO:0005634 nucleus 12.24% (18/147) 1.73 9e-06 0.000178
GO:0051171 regulation of nitrogen compound metabolic process 10.2% (15/147) 1.82 2.7e-05 0.000475
GO:0080090 regulation of primary metabolic process 10.2% (15/147) 1.8 3e-05 0.000511
GO:0016651 oxidoreductase activity, acting on NAD(P)H 2.72% (4/147) 4.41 4.3e-05 0.000696
GO:0044249 cellular biosynthetic process 10.2% (15/147) 1.76 4.2e-05 0.000702
GO:0015074 DNA integration 4.08% (6/147) 3.21 5.4e-05 0.000839
GO:0043231 intracellular membrane-bounded organelle 16.33% (24/147) 1.22 9.4e-05 0.001417
GO:0043228 non-membrane-bounded organelle 6.12% (9/147) 2.29 0.000108 0.001464
GO:0019219 regulation of nucleobase-containing compound metabolic process 8.84% (13/147) 1.79 0.000113 0.001487
GO:0043232 intracellular non-membrane-bounded organelle 6.12% (9/147) 2.29 0.000108 0.001502
GO:1901576 organic substance biosynthetic process 10.2% (15/147) 1.64 0.000107 0.001532
GO:0043227 membrane-bounded organelle 16.33% (24/147) 1.21 0.000105 0.001544
GO:0022627 cytosolic small ribosomal subunit 2.04% (3/147) 4.97 0.000131 0.001683
GO:0019773 proteasome core complex, alpha-subunit complex 1.36% (2/147) 6.85 0.000146 0.001828
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) 1.36% (2/147) 6.77 0.000163 0.001945
GO:0060255 regulation of macromolecule metabolic process 10.2% (15/147) 1.58 0.000161 0.001967
GO:0031323 regulation of cellular metabolic process 10.2% (15/147) 1.58 0.000172 0.002004
GO:2001141 regulation of RNA biosynthetic process 8.16% (12/147) 1.81 0.000191 0.002089
GO:0006355 regulation of DNA-templated transcription 8.16% (12/147) 1.81 0.000191 0.002089
GO:0009058 biosynthetic process 10.2% (15/147) 1.56 0.000188 0.002146
GO:0019222 regulation of metabolic process 10.2% (15/147) 1.53 0.000241 0.002574
GO:0016593 Cdc73/Paf1 complex 1.36% (2/147) 6.35 0.00029 0.003032
GO:0051252 regulation of RNA metabolic process 8.16% (12/147) 1.73 0.0003 0.003083
GO:0110165 cellular anatomical entity 29.25% (43/147) 0.73 0.000387 0.003898
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain 1.36% (2/147) 5.82 0.000606 0.005982
GO:0010468 regulation of gene expression 8.84% (13/147) 1.52 0.000678 0.006567
GO:0010556 regulation of macromolecule biosynthetic process 8.84% (13/147) 1.51 0.000722 0.006857
GO:0071577 zinc ion transmembrane transport 1.36% (2/147) 5.68 0.000737 0.006875
GO:0009889 regulation of biosynthetic process 8.84% (13/147) 1.48 0.000854 0.007065
GO:0003674 molecular_function 48.3% (71/147) 0.45 0.00085 0.007146
GO:0050789 regulation of biological process 12.24% (18/147) 1.21 0.000822 0.007148
GO:0097159 organic cyclic compound binding 24.49% (36/147) 0.77 0.000782 0.007163
GO:0015986 proton motive force-driven ATP synthesis 1.36% (2/147) 5.6 0.000812 0.00718
GO:0006754 ATP biosynthetic process 1.36% (2/147) 5.6 0.000812 0.00718
GO:0031326 regulation of cellular biosynthetic process 8.84% (13/147) 1.48 0.000848 0.007252
GO:0005385 zinc ion transmembrane transporter activity 1.36% (2/147) 5.37 0.001123 0.009146
GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism 1.36% (2/147) 5.29 0.00125 0.009568
GO:0046961 proton-transporting ATPase activity, rotational mechanism 1.36% (2/147) 5.29 0.00125 0.009568
GO:0042625 ATPase-coupled ion transmembrane transporter activity 1.36% (2/147) 5.29 0.00125 0.009568
GO:0032447 protein urmylation 0.68% (1/147) 9.68 0.001223 0.009799
GO:0006829 zinc ion transport 1.36% (2/147) 5.24 0.001346 0.010004
GO:0006807 nitrogen compound metabolic process 21.09% (31/147) 0.81 0.001342 0.01012
GO:0009206 purine ribonucleoside triphosphate biosynthetic process 1.36% (2/147) 5.15 0.001509 0.010751
GO:0009145 purine nucleoside triphosphate biosynthetic process 1.36% (2/147) 5.15 0.001509 0.010751
GO:0008150 biological_process 39.46% (58/147) 0.5 0.001506 0.011036
GO:0065007 biological regulation 12.24% (18/147) 1.11 0.001812 0.012732
GO:0008792 arginine decarboxylase activity 0.68% (1/147) 9.0 0.001955 0.013374
GO:0071011 precatalytic spliceosome 1.36% (2/147) 4.97 0.001934 0.01341
GO:0072594 establishment of protein localization to organelle 2.72% (4/147) 2.93 0.00203 0.013705
GO:0043170 macromolecule metabolic process 19.05% (28/147) 0.81 0.002347 0.015638
GO:0033365 protein localization to organelle 2.72% (4/147) 2.81 0.002696 0.017508
GO:0009725 response to hormone 2.04% (3/147) 3.46 0.002682 0.017638
GO:0034551 mitochondrial respiratory chain complex III assembly 0.68% (1/147) 8.41 0.002932 0.018566
GO:0017062 respiratory chain complex III assembly 0.68% (1/147) 8.41 0.002932 0.018566
GO:0009719 response to endogenous stimulus 2.04% (3/147) 3.3 0.003694 0.022834
GO:0006527 arginine catabolic process 0.68% (1/147) 8.09 0.003663 0.022916
GO:0015318 inorganic molecular entity transmembrane transporter activity 3.4% (5/147) 2.26 0.004168 0.025156
GO:0008023 transcription elongation factor complex 1.36% (2/147) 4.39 0.004236 0.025271
GO:0005080 protein kinase C binding 0.68% (1/147) 7.91 0.00415 0.025347
GO:0034719 SMN-Sm protein complex 0.68% (1/147) 7.75 0.004638 0.027346
GO:0009201 ribonucleoside triphosphate biosynthetic process 1.36% (2/147) 4.28 0.004913 0.028642
GO:0009142 nucleoside triphosphate biosynthetic process 1.36% (2/147) 4.26 0.005027 0.028974
GO:0008295 spermidine biosynthetic process 0.68% (1/147) 7.54 0.005368 0.030261
GO:0008216 spermidine metabolic process 0.68% (1/147) 7.54 0.005368 0.030261
GO:0000041 transition metal ion transport 1.36% (2/147) 4.12 0.006102 0.032609
GO:0110104 mRNA alternative polyadenylation 0.68% (1/147) 7.41 0.005855 0.032645
GO:0090657 telomeric loop disassembly 0.68% (1/147) 7.35 0.006098 0.032928
GO:1904429 regulation of t-circle formation 0.68% (1/147) 7.35 0.006098 0.032928
GO:1904430 negative regulation of t-circle formation 0.68% (1/147) 7.35 0.006098 0.032928
GO:0044237 cellular metabolic process 19.05% (28/147) 0.7 0.006588 0.034843
GO:0005684 U2-type spliceosomal complex 1.36% (2/147) 4.03 0.006872 0.035611
GO:0010569 regulation of double-strand break repair via homologous recombination 0.68% (1/147) 7.19 0.006827 0.035737
GO:0071013 catalytic step 2 spliceosome 1.36% (2/147) 3.95 0.007601 0.038607
GO:0050794 regulation of cellular process 10.2% (15/147) 1.02 0.007595 0.038964
GO:0005488 binding 31.29% (46/147) 0.47 0.009163 0.046082
GO:0004523 RNA-DNA hybrid ribonuclease activity 1.36% (2/147) 3.78 0.009583 0.047727
GO:0006139 nucleobase-containing compound metabolic process 9.52% (14/147) 1.02 0.009707 0.047882
GO:0044238 primary metabolic process 21.77% (32/147) 0.6 0.010166 0.048287
GO:0005787 signal peptidase complex 0.68% (1/147) 6.64 0.009981 0.048304
GO:0010277 chlorophyllide a oxygenase [overall] activity 0.68% (1/147) 6.64 0.009981 0.048304
GO:0006259 DNA metabolic process 4.76% (7/147) 1.57 0.010084 0.048348
GO:0022890 inorganic cation transmembrane transporter activity 2.72% (4/147) 2.24 0.010611 0.04994
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (147) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms