Coexpression cluster: Cluster_9499 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0051252 regulation of RNA metabolic process 66.67% (2/3) 4.76 0.001779 0.008585
GO:0008023 transcription elongation factor complex 33.33% (1/3) 9.0 0.001946 0.008639
GO:0032784 regulation of DNA-templated transcription elongation 33.33% (1/3) 8.89 0.002105 0.008655
GO:0008134 transcription factor binding 33.33% (1/3) 8.94 0.00204 0.008711
GO:0019219 regulation of nucleobase-containing compound metabolic process 66.67% (2/3) 4.71 0.001924 0.008897
GO:0019209 kinase activator activity 33.33% (1/3) 9.14 0.001776 0.008962
GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity 33.33% (1/3) 9.14 0.001776 0.008962
GO:0030295 protein kinase activator activity 33.33% (1/3) 9.14 0.001776 0.008962
GO:0051253 negative regulation of RNA metabolic process 33.33% (1/3) 8.08 0.003685 0.009296
GO:0009889 regulation of biosynthetic process 66.67% (2/3) 4.4 0.002939 0.009321
GO:0045892 negative regulation of DNA-templated transcription 33.33% (1/3) 8.29 0.003192 0.009323
GO:1902679 negative regulation of RNA biosynthetic process 33.33% (1/3) 8.29 0.003192 0.009323
GO:0019222 regulation of metabolic process 66.67% (2/3) 4.24 0.003654 0.009433
GO:0019887 protein kinase regulator activity 33.33% (1/3) 8.16 0.0035 0.009477
GO:0000307 cyclin-dependent protein kinase holoenzyme complex 33.33% (1/3) 8.55 0.002659 0.009519
GO:0031323 regulation of cellular metabolic process 66.67% (2/3) 4.28 0.003433 0.009526
GO:0010556 regulation of macromolecule biosynthetic process 66.67% (2/3) 4.42 0.002834 0.009531
GO:0019207 kinase regulator activity 33.33% (1/3) 8.11 0.003625 0.00958
GO:0031326 regulation of cellular biosynthetic process 66.67% (2/3) 4.4 0.002935 0.009581
GO:0080090 regulation of primary metabolic process 66.67% (2/3) 4.51 0.002509 0.009605
GO:0060255 regulation of macromolecule metabolic process 66.67% (2/3) 4.29 0.003392 0.009654
GO:0010468 regulation of gene expression 66.67% (2/3) 4.43 0.002796 0.009698
GO:0000118 histone deacetylase complex 33.33% (1/3) 8.57 0.002624 0.009707
GO:0035601 protein deacylation 33.33% (1/3) 9.67 0.001228 0.009733
GO:0098732 macromolecule deacylation 33.33% (1/3) 9.67 0.001228 0.009733
GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides 33.33% (1/3) 8.31 0.003157 0.009733
GO:0051171 regulation of nitrogen compound metabolic process 66.67% (2/3) 4.53 0.002463 0.009763
GO:1902911 protein kinase complex 33.33% (1/3) 7.95 0.004048 0.009769
GO:1902554 serine/threonine protein kinase complex 33.33% (1/3) 7.98 0.003964 0.009777
GO:0032786 positive regulation of DNA-templated transcription, elongation 33.33% (1/3) 9.18 0.001721 0.010056
GO:0000122 negative regulation of transcription by RNA polymerase II 33.33% (1/3) 9.22 0.001671 0.010307
GO:2001141 regulation of RNA biosynthetic process 66.67% (2/3) 4.84 0.001611 0.010518
GO:0006355 regulation of DNA-templated transcription 66.67% (2/3) 4.84 0.001611 0.010518
GO:0043539 protein serine/threonine kinase activator activity 33.33% (1/3) 9.44 0.001437 0.010634
GO:0019213 deacetylase activity 33.33% (1/3) 9.87 0.001068 0.010777
GO:0032806 carboxy-terminal domain protein kinase complex 33.33% (1/3) 9.73 0.001178 0.010894
GO:0033558 protein lysine deacetylase activity 33.33% (1/3) 10.25 0.000819 0.011357
GO:0006476 protein deacetylation 33.33% (1/3) 9.92 0.001033 0.011467
GO:0016575 histone deacetylation 33.33% (1/3) 9.92 0.001033 0.011467
GO:0045934 negative regulation of nucleobase-containing compound metabolic process 33.33% (1/3) 7.67 0.004899 0.011571
GO:0004407 histone deacetylase activity 33.33% (1/3) 10.26 0.000814 0.0129
GO:0140993 histone modifying activity 33.33% (1/3) 7.36 0.006058 0.013724
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds 33.33% (1/3) 7.3 0.006322 0.013759
GO:0032991 protein-containing complex 66.67% (2/3) 3.85 0.006232 0.013836
GO:0016570 histone modification 33.33% (1/3) 7.38 0.005999 0.013872
GO:0006357 regulation of transcription by RNA polymerase II 66.67% (2/3) 6.65 0.000131 0.014568
GO:0140513 nuclear protein-containing complex 66.67% (2/3) 5.48 0.000661 0.014664
GO:1902494 catalytic complex 66.67% (2/3) 5.35 0.000798 0.014762
GO:0061575 cyclin-dependent protein serine/threonine kinase activator activity 33.33% (1/3) 10.82 0.000554 0.015375
GO:0008047 enzyme activator activity 33.33% (1/3) 7.06 0.007465 0.015634
GO:0050794 regulation of cellular process 66.67% (2/3) 3.73 0.007367 0.015725
GO:0050789 regulation of biological process 66.67% (2/3) 3.65 0.008115 0.016086
GO:0051172 negative regulation of nitrogen compound metabolic process 33.33% (1/3) 6.96 0.008026 0.016198
GO:0140677 molecular function activator activity 33.33% (1/3) 6.97 0.007937 0.016314
GO:1902680 positive regulation of RNA biosynthetic process 33.33% (1/3) 6.73 0.009376 0.017639
GO:0045893 positive regulation of DNA-templated transcription 33.33% (1/3) 6.73 0.009376 0.017639
GO:0065007 biological regulation 66.67% (2/3) 3.55 0.009328 0.018164
GO:0045935 positive regulation of nucleobase-containing compound metabolic process 33.33% (1/3) 6.4 0.0118 0.019845
GO:0010557 positive regulation of macromolecule biosynthetic process 33.33% (1/3) 6.44 0.011478 0.019907
GO:0009891 positive regulation of biosynthetic process 33.33% (1/3) 6.44 0.011478 0.019907
GO:0031328 positive regulation of cellular biosynthetic process 33.33% (1/3) 6.44 0.011478 0.019907
GO:0032259 methylation 33.33% (1/3) 6.42 0.011666 0.019922
GO:0008024 cyclin/CDK positive transcription elongation factor complex 33.33% (1/3) 10.84 0.000544 0.02013
GO:0019908 nuclear cyclin-dependent protein kinase holoenzyme complex 33.33% (1/3) 10.84 0.000544 0.02013
GO:0051254 positive regulation of RNA metabolic process 33.33% (1/3) 6.48 0.011171 0.020327
GO:0061695 transferase complex, transferring phosphorus-containing groups 33.33% (1/3) 6.49 0.011086 0.02051
GO:0031325 positive regulation of cellular metabolic process 33.33% (1/3) 6.13 0.01423 0.023575
GO:0009893 positive regulation of metabolic process 33.33% (1/3) 5.91 0.016552 0.024828
GO:0010604 positive regulation of macromolecule metabolic process 33.33% (1/3) 5.91 0.016542 0.025153
GO:0051173 positive regulation of nitrogen compound metabolic process 33.33% (1/3) 5.93 0.016325 0.025168
GO:0009892 negative regulation of metabolic process 33.33% (1/3) 5.77 0.01817 0.025212
GO:0016741 transferase activity, transferring one-carbon groups 33.33% (1/3) 5.78 0.018121 0.025461
GO:0009890 negative regulation of biosynthetic process 33.33% (1/3) 5.93 0.01631 0.025499
GO:0010605 negative regulation of macromolecule metabolic process 33.33% (1/3) 5.8 0.017786 0.025639
GO:0031324 negative regulation of cellular metabolic process 33.33% (1/3) 5.78 0.018072 0.025718
GO:0031327 negative regulation of cellular biosynthetic process 33.33% (1/3) 5.94 0.016241 0.025753
GO:0008168 methyltransferase activity 33.33% (1/3) 5.84 0.017406 0.025761
GO:0010558 negative regulation of macromolecule biosynthetic process 33.33% (1/3) 5.98 0.015787 0.025769
GO:0098772 molecular function regulator activity 33.33% (1/3) 5.72 0.018811 0.025779
GO:0030234 enzyme regulator activity 33.33% (1/3) 5.82 0.017653 0.025782
GO:0048522 positive regulation of cellular process 33.33% (1/3) 5.95 0.016068 0.025849
GO:0048518 positive regulation of biological process 33.33% (1/3) 5.69 0.019235 0.026038
GO:0008150 biological_process 100.0% (3/3) 1.85 0.021524 0.028786
GO:0048523 negative regulation of cellular process 33.33% (1/3) 5.4 0.023477 0.031023
GO:0048519 negative regulation of biological process 33.33% (1/3) 5.38 0.023895 0.031204
GO:1990234 transferase complex 33.33% (1/3) 5.17 0.027574 0.03559
GO:0043687 post-translational protein modification 33.33% (1/3) 4.92 0.032598 0.041591
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (3) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms