Coexpression cluster: Cluster_481 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0000987 cis-regulatory region sequence-specific DNA binding 11.48% (7/61) 5.63 0.0 0.0
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding 11.48% (7/61) 5.72 0.0 0.0
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding 11.48% (7/61) 5.4 0.0 0.0
GO:0006357 regulation of transcription by RNA polymerase II 13.11% (8/61) 4.31 0.0 0.0
GO:0001067 transcription regulatory region nucleic acid binding 11.48% (7/61) 4.65 0.0 0.0
GO:0000976 transcription cis-regulatory region binding 11.48% (7/61) 4.65 0.0 0.0
GO:1990837 sequence-specific double-stranded DNA binding 11.48% (7/61) 4.54 0.0 0.0
GO:0140110 transcription regulator activity 16.39% (10/61) 3.36 0.0 1e-06
GO:0003700 DNA-binding transcription factor activity 14.75% (9/61) 3.46 0.0 2e-06
GO:0051087 protein-folding chaperone binding 6.56% (4/61) 6.24 0.0 3e-06
GO:0003690 double-stranded DNA binding 11.48% (7/61) 3.97 0.0 4e-06
GO:2001141 regulation of RNA biosynthetic process 16.39% (10/61) 2.81 1e-06 1.3e-05
GO:0006355 regulation of DNA-templated transcription 16.39% (10/61) 2.81 1e-06 1.3e-05
GO:0051252 regulation of RNA metabolic process 16.39% (10/61) 2.74 2e-06 1.9e-05
GO:0043565 sequence-specific DNA binding 11.48% (7/61) 3.51 3e-06 2.2e-05
GO:0019219 regulation of nucleobase-containing compound metabolic process 16.39% (10/61) 2.68 3e-06 2.3e-05
GO:0030054 cell junction 6.56% (4/61) 5.23 4e-06 2.6e-05
GO:0070161 anchoring junction 6.56% (4/61) 5.24 4e-06 2.6e-05
GO:0005911 cell-cell junction 6.56% (4/61) 5.25 4e-06 2.7e-05
GO:0009506 plasmodesma 6.56% (4/61) 5.26 4e-06 2.8e-05
GO:0051171 regulation of nitrogen compound metabolic process 16.39% (10/61) 2.5 1e-05 5.3e-05
GO:0080090 regulation of primary metabolic process 16.39% (10/61) 2.49 1e-05 5.5e-05
GO:0010468 regulation of gene expression 16.39% (10/61) 2.41 1.7e-05 8.4e-05
GO:0010556 regulation of macromolecule biosynthetic process 16.39% (10/61) 2.4 1.8e-05 8.5e-05
GO:0009889 regulation of biosynthetic process 16.39% (10/61) 2.37 2.1e-05 9.2e-05
GO:0061630 ubiquitin protein ligase activity 6.56% (4/61) 4.64 2.2e-05 9.4e-05
GO:0031326 regulation of cellular biosynthetic process 16.39% (10/61) 2.37 2e-05 9.5e-05
GO:0061659 ubiquitin-like protein ligase activity 6.56% (4/61) 4.58 2.6e-05 0.000107
GO:0006457 protein folding 6.56% (4/61) 4.46 3.5e-05 0.000142
GO:0060255 regulation of macromolecule metabolic process 16.39% (10/61) 2.27 3.8e-05 0.000147
GO:0031323 regulation of cellular metabolic process 16.39% (10/61) 2.26 4e-05 0.00015
GO:0019222 regulation of metabolic process 16.39% (10/61) 2.21 5.2e-05 0.000189
GO:0004842 ubiquitin-protein transferase activity 6.56% (4/61) 3.79 0.000212 0.000745
GO:0070647 protein modification by small protein conjugation or removal 8.2% (5/61) 3.2 0.000222 0.000757
GO:0019787 ubiquitin-like protein transferase activity 6.56% (4/61) 3.74 0.000242 0.000802
GO:0016755 aminoacyltransferase activity 6.56% (4/61) 3.71 0.000264 0.000851
GO:0005634 nucleus 14.75% (9/61) 2.0 0.000392 0.001229
GO:0043687 post-translational protein modification 8.2% (5/61) 2.9 0.00057 0.001741
GO:0016567 protein ubiquitination 6.56% (4/61) 3.29 0.000782 0.002327
GO:0050794 regulation of cellular process 16.39% (10/61) 1.7 0.000897 0.002601
GO:0032446 protein modification by small protein conjugation 6.56% (4/61) 3.21 0.000955 0.002702
GO:0050789 regulation of biological process 16.39% (10/61) 1.63 0.001301 0.003594
GO:0003677 DNA binding 11.48% (7/61) 1.96 0.002083 0.00562
GO:0065007 biological regulation 16.39% (10/61) 1.53 0.002199 0.005798
GO:0016746 acyltransferase activity 6.56% (4/61) 2.44 0.006476 0.016693
GO:0006801 superoxide metabolic process 1.64% (1/61) 6.68 0.009699 0.024458
GO:0110165 cellular anatomical entity 29.51% (18/61) 0.74 0.016044 0.039598
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (61) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms