Coexpression cluster: Cluster_212 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0032776 DNA methylation on cytosine 5.47% (7/128) 8.56 0.0 0.0
GO:0010424 DNA methylation on cytosine within a CG sequence 5.47% (7/128) 8.56 0.0 0.0
GO:0010216 obsolete negative regulation of gene expression via chromosomal DNA cytosine methylation 5.47% (7/128) 8.24 0.0 0.0
GO:0047793 cycloeucalenol cycloisomerase activity 3.91% (5/128) 10.52 0.0 0.0
GO:0003886 DNA (cytosine-5-)-methyltransferase activity 5.47% (7/128) 7.84 0.0 0.0
GO:0009008 DNA-methyltransferase activity 5.47% (7/128) 7.84 0.0 0.0
GO:0006305 DNA alkylation 5.47% (7/128) 7.72 0.0 0.0
GO:0006306 DNA methylation 5.47% (7/128) 7.72 0.0 0.0
GO:0006304 DNA modification 5.47% (7/128) 6.66 0.0 0.0
GO:0016872 intramolecular lyase activity 3.91% (5/128) 7.75 0.0 0.0
GO:0051052 regulation of DNA metabolic process 5.47% (7/128) 5.79 0.0 0.0
GO:0044030 regulation of DNA methylation 3.12% (4/128) 7.86 0.0 0.0
GO:0140097 catalytic activity, acting on DNA 8.59% (11/128) 3.46 0.0 0.0
GO:0043414 macromolecule methylation 6.25% (8/128) 4.39 0.0 0.0
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity 6.25% (8/128) 4.17 0.0 1e-06
GO:0032259 methylation 6.25% (8/128) 4.0 0.0 1e-06
GO:0016853 isomerase activity 6.25% (8/128) 3.61 0.0 1e-05
GO:0003824 catalytic activity 36.72% (47/128) 1.02 0.0 1.2e-05
GO:0008168 methyltransferase activity 6.25% (8/128) 3.42 1e-06 2.3e-05
GO:0043226 organelle 21.88% (28/128) 1.42 1e-06 2.6e-05
GO:0016741 transferase activity, transferring one-carbon groups 6.25% (8/128) 3.36 1e-06 2.7e-05
GO:0043229 intracellular organelle 21.88% (28/128) 1.42 1e-06 2.8e-05
GO:0140640 catalytic activity, acting on a nucleic acid 10.16% (13/128) 2.33 2e-06 4.1e-05
GO:0140658 ATP-dependent chromatin remodeler activity 3.12% (4/128) 5.07 7e-06 0.000127
GO:0045739 positive regulation of DNA repair 1.56% (2/128) 8.74 1e-05 0.000177
GO:0004555 alpha,alpha-trehalase activity 1.56% (2/128) 8.55 1.3e-05 0.000205
GO:0005993 trehalose catabolic process 1.56% (2/128) 8.55 1.3e-05 0.000205
GO:0015927 trehalase activity 1.56% (2/128) 8.55 1.3e-05 0.000205
GO:0004614 phosphoglucomutase activity 1.56% (2/128) 8.44 1.6e-05 0.000231
GO:0017177 glucosidase II complex 1.56% (2/128) 8.34 1.8e-05 0.000259
GO:0005634 nucleus 12.5% (16/128) 1.76 2.2e-05 0.000305
GO:0043231 intracellular membrane-bounded organelle 17.97% (23/128) 1.36 2.8e-05 0.000374
GO:0043227 membrane-bounded organelle 17.97% (23/128) 1.35 3.2e-05 0.000408
GO:0044238 primary metabolic process 28.12% (36/128) 0.97 4.3e-05 0.000536
GO:0006491 N-glycan processing 1.56% (2/128) 7.36 7.1e-05 0.000868
GO:0003677 DNA binding 10.16% (13/128) 1.79 0.000113 0.001334
GO:0071704 organic substance metabolic process 28.12% (36/128) 0.88 0.00015 0.001732
GO:0004725 protein tyrosine phosphatase activity 1.56% (2/128) 6.72 0.000174 0.001952
GO:0043170 macromolecule metabolic process 21.88% (28/128) 1.01 0.000244 0.002671
GO:0051054 positive regulation of DNA metabolic process 1.56% (2/128) 6.21 0.000354 0.003769
GO:0051171 regulation of nitrogen compound metabolic process 9.38% (12/128) 1.7 0.000365 0.003792
GO:0080090 regulation of primary metabolic process 9.38% (12/128) 1.68 0.000397 0.003932
GO:0008152 metabolic process 28.12% (36/128) 0.81 0.000391 0.003967
GO:0006282 regulation of DNA repair 1.56% (2/128) 6.1 0.000412 0.003984
GO:0003674 molecular_function 50.0% (64/128) 0.5 0.000474 0.004483
GO:0090116 C-5 methylation of cytosine 0.78% (1/128) 10.61 0.000639 0.005791
GO:0016868 intramolecular phosphotransferase activity 1.56% (2/128) 5.76 0.000654 0.005804
GO:0019222 regulation of metabolic process 10.16% (13/128) 1.52 0.000636 0.00589
GO:0046352 disaccharide catabolic process 1.56% (2/128) 5.68 0.000731 0.006355
GO:0004467 long-chain fatty acid-CoA ligase activity 1.56% (2/128) 5.62 0.000796 0.006778
GO:0008889 glycerophosphodiester phosphodiesterase activity 1.56% (2/128) 5.58 0.000837 0.006994
GO:0048584 positive regulation of response to stimulus 1.56% (2/128) 5.49 0.000951 0.007788
GO:0009313 oligosaccharide catabolic process 1.56% (2/128) 5.46 0.000996 0.008006
GO:0030154 cell differentiation 1.56% (2/128) 5.41 0.001061 0.008373
GO:0009100 glycoprotein metabolic process 1.56% (2/128) 5.38 0.0011 0.008517
GO:0006259 DNA metabolic process 6.25% (8/128) 1.96 0.001159 0.008817
GO:0008150 biological_process 40.62% (52/128) 0.55 0.001205 0.008849
GO:0110165 cellular anatomical entity 28.91% (37/128) 0.71 0.0012 0.00897
GO:0006807 nitrogen compound metabolic process 21.88% (28/128) 0.86 0.001251 0.009034
GO:0060255 regulation of macromolecule metabolic process 9.38% (12/128) 1.46 0.001475 0.010469
GO:0015645 fatty acid ligase activity 1.56% (2/128) 5.11 0.001598 0.010472
GO:0080135 regulation of cellular response to stress 1.56% (2/128) 5.12 0.001575 0.010482
GO:0031323 regulation of cellular metabolic process 9.38% (12/128) 1.45 0.001551 0.010487
GO:0004190 aspartic-type endopeptidase activity 2.34% (3/128) 3.74 0.001548 0.010634
GO:0070001 aspartic-type peptidase activity 2.34% (3/128) 3.74 0.001548 0.010634
GO:0005575 cellular_component 31.25% (40/128) 0.64 0.00171 0.011034
GO:0019219 regulation of nucleobase-containing compound metabolic process 7.81% (10/128) 1.61 0.001737 0.011045
GO:0005991 trehalose metabolic process 1.56% (2/128) 4.97 0.001937 0.012133
GO:0008094 ATP-dependent activity, acting on DNA 3.12% (4/128) 2.92 0.002054 0.012683
GO:0043412 macromolecule modification 12.5% (16/128) 1.15 0.002349 0.014297
GO:0016878 acid-thiol ligase activity 1.56% (2/128) 4.8 0.002418 0.014509
GO:1903606 cytochrome c metabolic process 0.78% (1/128) 8.5 0.002766 0.015708
GO:1903604 cytochrome metabolic process 0.78% (1/128) 8.5 0.002766 0.015708
GO:1903607 cytochrome c biosynthetic process 0.78% (1/128) 8.5 0.002766 0.015708
GO:1903605 cytochrome biosynthetic process 0.78% (1/128) 8.5 0.002766 0.015708
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds 3.91% (5/128) 2.36 0.003068 0.0172
GO:0030337 DNA polymerase processivity factor activity 0.78% (1/128) 8.29 0.00319 0.017204
GO:0043626 PCNA complex 0.78% (1/128) 8.29 0.00319 0.017204
GO:0044796 DNA polymerase processivity factor complex 0.78% (1/128) 8.29 0.00319 0.017204
GO:0007275 multicellular organism development 1.56% (2/128) 4.59 0.003235 0.017226
GO:0031325 positive regulation of cellular metabolic process 3.12% (4/128) 2.71 0.003439 0.018086
GO:0048869 cellular developmental process 1.56% (2/128) 4.54 0.003482 0.018088
GO:0008650 rRNA (uridine-2'-O-)-methyltransferase activity 0.78% (1/128) 8.11 0.003615 0.018554
GO:0003676 nucleic acid binding 13.28% (17/128) 1.01 0.004442 0.022527
GO:0150005 enzyme activator complex 0.78% (1/128) 7.74 0.004676 0.023433
GO:1990904 ribonucleoprotein complex 3.91% (5/128) 2.19 0.005169 0.025602
GO:0048522 positive regulation of cellular process 3.12% (4/128) 2.54 0.005278 0.025844
GO:0090304 nucleic acid metabolic process 9.38% (12/128) 1.23 0.005398 0.026129
GO:0051173 positive regulation of nitrogen compound metabolic process 3.12% (4/128) 2.51 0.005578 0.026701
GO:0016798 hydrolase activity, acting on glycosyl bonds 3.91% (5/128) 2.15 0.005705 0.027005
GO:0009893 positive regulation of metabolic process 3.12% (4/128) 2.49 0.005854 0.027105
GO:0016405 CoA-ligase activity 1.56% (2/128) 4.14 0.005949 0.02725
GO:0010604 positive regulation of macromolecule metabolic process 3.12% (4/128) 2.49 0.005842 0.027346
GO:0061666 UFM1 ligase activity 0.78% (1/128) 7.29 0.006371 0.028871
GO:0140657 ATP-dependent activity 5.47% (7/128) 1.66 0.007248 0.032501
GO:0062105 RNA 2'-O-methyltransferase activity 0.78% (1/128) 7.07 0.007428 0.032963
GO:0071568 UFM1 transferase activity 0.78% (1/128) 7.03 0.00764 0.033552
GO:0034641 cellular nitrogen compound metabolic process 10.94% (14/128) 1.03 0.008731 0.037195
GO:0035658 Mon1-Ccz1 complex 0.78% (1/128) 6.84 0.008696 0.037421
GO:0022625 cytosolic large ribosomal subunit 1.56% (2/128) 3.85 0.008651 0.037607
GO:0019538 protein metabolic process 12.5% (16/128) 0.95 0.008959 0.037787
GO:1990564 protein polyufmylation 0.78% (1/128) 6.74 0.00933 0.038216
GO:1990592 protein K69-linked ufmylation 0.78% (1/128) 6.74 0.00933 0.038216
GO:0003682 chromatin binding 2.34% (3/128) 2.8 0.009442 0.038307
GO:0080134 regulation of response to stress 1.56% (2/128) 3.8 0.009299 0.038837
GO:0005984 disaccharide metabolic process 1.56% (2/128) 3.75 0.009968 0.038956
GO:0004824 lysine-tRNA ligase activity 0.78% (1/128) 6.64 0.009963 0.039297
GO:0006430 lysyl-tRNA aminoacylation 0.78% (1/128) 6.64 0.009963 0.039297
GO:0048518 positive regulation of biological process 3.12% (4/128) 2.28 0.009816 0.03945
GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 0.78% (1/128) 6.52 0.010806 0.04038
GO:0015886 heme transport 0.78% (1/128) 6.52 0.010806 0.04038
GO:0015232 heme transmembrane transporter activity 0.78% (1/128) 6.52 0.010806 0.04038
GO:1901678 iron coordination entity transport 0.78% (1/128) 6.52 0.010806 0.04038
GO:0016787 hydrolase activity 10.94% (14/128) 1.0 0.010766 0.041693
GO:0071569 protein ufmylation 0.78% (1/128) 6.44 0.011438 0.04237
GO:0016436 rRNA (uridine) methyltransferase activity 0.78% (1/128) 6.36 0.01207 0.044325
GO:0009311 oligosaccharide metabolic process 1.56% (2/128) 3.59 0.012246 0.044587
GO:0015934 large ribosomal subunit 1.56% (2/128) 3.57 0.012605 0.045507
GO:0005975 carbohydrate metabolic process 4.69% (6/128) 1.65 0.012909 0.046211
GO:0016435 rRNA (guanine) methyltransferase activity 0.78% (1/128) 6.24 0.013121 0.046581
GO:0043467 regulation of generation of precursor metabolites and energy 0.78% (1/128) 6.15 0.013962 0.048753
GO:0042548 regulation of photosynthesis, light reaction 0.78% (1/128) 6.15 0.013962 0.048753
GO:0042644 chloroplast nucleoid 0.78% (1/128) 6.09 0.014592 0.04973
GO:0042646 plastid nucleoid 0.78% (1/128) 6.09 0.014592 0.04973
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (128) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms