Coexpression cluster: Cluster_496 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016759 cellulose synthase activity 6.12% (6/98) 5.67 0.0 0.0
GO:0016760 cellulose synthase (UDP-forming) activity 6.12% (6/98) 5.72 0.0 0.0
GO:0030243 cellulose metabolic process 6.12% (6/98) 5.48 0.0 0.0
GO:0030244 cellulose biosynthetic process 6.12% (6/98) 5.49 0.0 0.0
GO:0016051 carbohydrate biosynthetic process 8.16% (8/98) 4.41 0.0 1e-06
GO:0009833 plant-type primary cell wall biogenesis 6.12% (6/98) 5.73 0.0 1e-06
GO:0005575 cellular_component 46.94% (46/98) 1.23 0.0 1e-06
GO:0051273 beta-glucan metabolic process 6.12% (6/98) 5.15 0.0 1e-06
GO:0051274 beta-glucan biosynthetic process 6.12% (6/98) 5.15 0.0 1e-06
GO:0009832 plant-type cell wall biogenesis 6.12% (6/98) 5.18 0.0 1e-06
GO:0044085 cellular component biogenesis 7.14% (7/98) 4.52 0.0 1e-06
GO:0061631 ubiquitin conjugating enzyme activity 4.08% (4/98) 7.19 0.0 1e-06
GO:0061650 ubiquitin-like protein conjugating enzyme activity 4.08% (4/98) 7.0 0.0 1e-06
GO:0042546 cell wall biogenesis 6.12% (6/98) 4.94 0.0 2e-06
GO:0003674 molecular_function 62.24% (61/98) 0.82 0.0 2e-06
GO:0009059 macromolecule biosynthetic process 11.22% (11/98) 3.15 0.0 2e-06
GO:0071669 plant-type cell wall organization or biogenesis 6.12% (6/98) 4.97 0.0 2e-06
GO:0009250 glucan biosynthetic process 6.12% (6/98) 4.79 0.0 3e-06
GO:0005802 trans-Golgi network 6.12% (6/98) 4.62 0.0 5e-06
GO:0071840 cellular component organization or biogenesis 15.31% (15/98) 2.38 0.0 5e-06
GO:0098791 Golgi apparatus subcompartment 6.12% (6/98) 4.5 0.0 7e-06
GO:0000271 polysaccharide biosynthetic process 6.12% (6/98) 4.48 0.0 8e-06
GO:0031984 organelle subcompartment 6.12% (6/98) 4.46 0.0 8e-06
GO:0044042 glucan metabolic process 6.12% (6/98) 4.38 1e-06 1.1e-05
GO:0110165 cellular anatomical entity 38.78% (38/98) 1.13 1e-06 1.2e-05
GO:0071554 cell wall organization or biogenesis 6.12% (6/98) 4.32 1e-06 1.3e-05
GO:0043226 organelle 24.49% (24/98) 1.59 1e-06 1.4e-05
GO:0043229 intracellular organelle 24.49% (24/98) 1.59 1e-06 1.5e-05
GO:0035251 UDP-glucosyltransferase activity 6.12% (6/98) 4.04 2e-06 3.4e-05
GO:0005976 polysaccharide metabolic process 6.12% (6/98) 3.89 4e-06 5.6e-05
GO:1903047 mitotic cell cycle process 6.12% (6/98) 3.89 4e-06 5.8e-05
GO:1901576 organic substance biosynthetic process 14.29% (14/98) 2.12 4e-06 5.8e-05
GO:0043227 membrane-bounded organelle 21.43% (21/98) 1.6 4e-06 5.8e-05
GO:0008194 UDP-glycosyltransferase activity 7.14% (7/98) 3.41 5e-06 6.8e-05
GO:0046527 glucosyltransferase activity 6.12% (6/98) 3.76 6e-06 8.5e-05
GO:0009058 biosynthetic process 14.29% (14/98) 2.05 7e-06 9.3e-05
GO:0016758 hexosyltransferase activity 7.14% (7/98) 3.2 1.3e-05 0.000162
GO:0003676 nucleic acid binding 19.39% (19/98) 1.56 1.9e-05 0.000233
GO:0008418 protein-N-terminal asparagine amidohydrolase activity 2.04% (2/98) 8.09 2.6e-05 0.000309
GO:0044249 cellular biosynthetic process 12.24% (12/98) 2.02 4.1e-05 0.000475
GO:0043231 intracellular membrane-bounded organelle 19.39% (19/98) 1.47 4.6e-05 0.000511
GO:0032991 protein-containing complex 15.31% (15/98) 1.73 4.6e-05 0.000517
GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity 2.04% (2/98) 7.56 5.4e-05 0.000588
GO:0036402 proteasome-activating activity 2.04% (2/98) 7.39 6.9e-05 0.000694
GO:0005634 nucleus 13.27% (13/98) 1.84 6.8e-05 0.000705
GO:0003824 catalytic activity 34.69% (34/98) 0.94 6.7e-05 0.000712
GO:0034063 stress granule assembly 2.04% (2/98) 7.14 9.8e-05 0.000908
GO:0006511 ubiquitin-dependent protein catabolic process 5.1% (5/98) 3.49 9.2e-05 0.000914
GO:0005488 binding 39.8% (39/98) 0.82 9.7e-05 0.000925
GO:0022402 cell cycle process 6.12% (6/98) 3.05 9.7e-05 0.000936
GO:0004842 ubiquitin-protein transferase activity 5.1% (5/98) 3.43 0.000112 0.001004
GO:0005986 sucrose biosynthetic process 2.04% (2/98) 7.04 0.000112 0.001017
GO:0034388 Pwp2p-containing subcomplex of 90S preribosome 2.04% (2/98) 7.0 0.000119 0.001023
GO:0005975 carbohydrate metabolic process 8.16% (8/98) 2.45 0.000119 0.001041
GO:0019787 ubiquitin-like protein transferase activity 5.1% (5/98) 3.38 0.000132 0.001117
GO:0019941 modification-dependent protein catabolic process 5.1% (5/98) 3.35 0.000143 0.001191
GO:0016755 aminoacyltransferase activity 5.1% (5/98) 3.34 0.000147 0.0012
GO:0033962 P-body assembly 2.04% (2/98) 6.76 0.000165 0.00132
GO:0043632 modification-dependent macromolecule catabolic process 5.1% (5/98) 3.29 0.000174 0.001369
GO:0016757 glycosyltransferase activity 7.14% (7/98) 2.58 0.000183 0.001415
GO:0006000 fructose metabolic process 2.04% (2/98) 6.6 0.000205 0.00156
GO:0044238 primary metabolic process 28.57% (28/98) 0.99 0.000215 0.001611
GO:0008540 proteasome regulatory particle, base subcomplex 2.04% (2/98) 6.55 0.000221 0.001632
GO:0050308 sugar-phosphatase activity 2.04% (2/98) 6.52 0.000231 0.001681
GO:0030388 fructose 1,6-bisphosphate metabolic process 2.04% (2/98) 6.39 0.000274 0.001963
GO:0009057 macromolecule catabolic process 6.12% (6/98) 2.76 0.000282 0.001985
GO:0043170 macromolecule metabolic process 23.47% (23/98) 1.11 0.00029 0.002015
GO:0001054 RNA polymerase I activity 2.04% (2/98) 6.3 0.000313 0.00211
GO:1901575 organic substance catabolic process 8.16% (8/98) 2.24 0.00031 0.002122
GO:0032040 small-subunit processome 3.06% (3/98) 4.52 0.000327 0.002169
GO:0000028 ribosomal small subunit assembly 2.04% (2/98) 6.22 0.000346 0.002233
GO:0005736 RNA polymerase I complex 2.04% (2/98) 6.23 0.000342 0.002238
GO:0006002 fructose 6-phosphate metabolic process 2.04% (2/98) 6.14 0.000389 0.002478
GO:0051603 proteolysis involved in protein catabolic process 5.1% (5/98) 3.01 0.000425 0.002669
GO:0009056 catabolic process 8.16% (8/98) 2.17 0.000431 0.002674
GO:0032549 ribonucleoside binding 2.04% (2/98) 6.04 0.000444 0.002682
GO:0001882 nucleoside binding 2.04% (2/98) 6.04 0.000444 0.002682
GO:0008150 biological_process 43.88% (43/98) 0.66 0.00048 0.002861
GO:0097159 organic cyclic compound binding 27.55% (27/98) 0.94 0.000501 0.002946
GO:0071704 organic substance metabolic process 28.57% (28/98) 0.9 0.000585 0.003403
GO:0140513 nuclear protein-containing complex 7.14% (7/98) 2.26 0.000694 0.003986
GO:0044237 cellular metabolic process 23.47% (23/98) 1.0 0.000828 0.004694
GO:0006094 gluconeogenesis 2.04% (2/98) 5.53 0.000895 0.004957
GO:0019319 hexose biosynthetic process 2.04% (2/98) 5.53 0.000895 0.004957
GO:0005506 iron ion binding 5.1% (5/98) 2.73 0.000997 0.005457
GO:0010337 regulation of salicylic acid metabolic process 2.04% (2/98) 5.41 0.001063 0.005679
GO:0080142 regulation of salicylic acid biosynthetic process 2.04% (2/98) 5.41 0.001063 0.005679
GO:0046364 monosaccharide biosynthetic process 2.04% (2/98) 5.36 0.001136 0.006004
GO:0009987 cellular process 31.63% (31/98) 0.78 0.001156 0.006041
GO:0051648 vesicle localization 2.04% (2/98) 5.27 0.001275 0.006112
GO:0051650 establishment of vesicle localization 2.04% (2/98) 5.27 0.001275 0.006112
GO:0008152 metabolic process 28.57% (28/98) 0.83 0.001257 0.006153
GO:0099515 actin filament-based transport 2.04% (2/98) 5.29 0.001251 0.00619
GO:0099518 vesicle cytoskeletal trafficking 2.04% (2/98) 5.29 0.001251 0.00619
GO:0030048 actin filament-based movement 2.04% (2/98) 5.29 0.001251 0.00619
GO:0030050 vesicle transport along actin filament 2.04% (2/98) 5.29 0.001251 0.00619
GO:0000146 microfilament motor activity 2.04% (2/98) 5.26 0.001307 0.006201
GO:0030705 cytoskeleton-dependent intracellular transport 2.04% (2/98) 5.25 0.001323 0.006214
GO:0022607 cellular component assembly 5.1% (5/98) 2.66 0.00123 0.006356
GO:0016740 transferase activity 17.35% (17/98) 1.16 0.00137 0.00637
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2.04% (2/98) 5.19 0.001421 0.006544
GO:0016459 myosin complex 2.04% (2/98) 5.16 0.001498 0.006827
GO:0046351 disaccharide biosynthetic process 2.04% (2/98) 5.06 0.00171 0.007719
GO:0005985 sucrose metabolic process 2.04% (2/98) 5.04 0.001746 0.007809
GO:0010565 regulation of cellular ketone metabolic process 2.04% (2/98) 5.0 0.001849 0.00819
GO:0030684 preribosome 3.06% (3/98) 3.64 0.001887 0.008199
GO:0009312 oligosaccharide biosynthetic process 2.04% (2/98) 4.99 0.001878 0.008237
GO:0062012 regulation of small molecule metabolic process 2.04% (2/98) 4.87 0.002195 0.009451
GO:0003729 mRNA binding 4.08% (4/98) 2.86 0.00238 0.010152
GO:0006635 fatty acid beta-oxidation 2.04% (2/98) 4.79 0.002459 0.010396
GO:0019203 carbohydrate phosphatase activity 2.04% (2/98) 4.77 0.002514 0.010437
GO:0030490 maturation of SSU-rRNA 2.04% (2/98) 4.78 0.002492 0.010439
GO:0019395 fatty acid oxidation 2.04% (2/98) 4.74 0.002625 0.0108
GO:0016070 RNA metabolic process 8.16% (8/98) 1.75 0.002729 0.011133
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process 3.06% (3/98) 3.37 0.0032 0.012941
GO:0009062 fatty acid catabolic process 2.04% (2/98) 4.57 0.003324 0.013326
GO:0044594 17-beta-hydroxysteroid dehydrogenase (NAD+) activity 1.02% (1/98) 8.12 0.003582 0.014114
GO:0000932 P-body 2.04% (2/98) 4.51 0.003579 0.014225
GO:0015629 actin cytoskeleton 2.04% (2/98) 4.47 0.003803 0.01486
GO:0006351 DNA-templated transcription 3.06% (3/98) 3.25 0.004067 0.01576
GO:0010498 proteasomal protein catabolic process 3.06% (3/98) 3.23 0.004173 0.016035
GO:0071949 FAD binding 2.04% (2/98) 4.39 0.004213 0.016057
GO:0036464 cytoplasmic ribonucleoprotein granule 2.04% (2/98) 4.35 0.004468 0.016756
GO:0005737 cytoplasm 9.18% (9/98) 1.51 0.004466 0.016884
GO:0035770 ribonucleoprotein granule 2.04% (2/98) 4.33 0.004599 0.016971
GO:0016043 cellular component organization 8.16% (8/98) 1.63 0.004577 0.017025
GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides 2.04% (2/98) 4.28 0.004925 0.01789
GO:0072329 monocarboxylic acid catabolic process 2.04% (2/98) 4.28 0.004925 0.01789
GO:0140110 transcription regulator activity 6.12% (6/98) 1.94 0.005049 0.018201
GO:0030163 protein catabolic process 3.06% (3/98) 3.11 0.005286 0.018907
GO:0006006 glucose metabolic process 2.04% (2/98) 4.19 0.005512 0.019565
GO:0034440 lipid oxidation 2.04% (2/98) 4.16 0.005736 0.020206
GO:0005984 disaccharide metabolic process 2.04% (2/98) 4.13 0.005964 0.020696
GO:0140098 catalytic activity, acting on RNA 5.1% (5/98) 2.13 0.005934 0.020747
GO:0044877 protein-containing complex binding 4.08% (4/98) 2.48 0.006034 0.020785
GO:0003723 RNA binding 7.14% (7/98) 1.7 0.00609 0.020824
GO:0055029 nuclear DNA-directed RNA polymerase complex 2.04% (2/98) 4.07 0.006484 0.021536
GO:0140694 non-membrane-bounded organelle assembly 2.04% (2/98) 4.07 0.00645 0.021577
GO:0003724 RNA helicase activity 2.04% (2/98) 4.07 0.00645 0.021577
GO:0008186 ATP-dependent activity, acting on RNA 2.04% (2/98) 4.07 0.00645 0.021577
GO:0051656 establishment of organelle localization 2.04% (2/98) 4.01 0.006988 0.022567
GO:0016746 acyltransferase activity 5.1% (5/98) 2.08 0.006966 0.022651
GO:0030029 actin filament-based process 2.04% (2/98) 4.02 0.006918 0.022653
GO:0006364 rRNA processing 3.06% (3/98) 2.97 0.006877 0.022679
GO:1901565 organonitrogen compound catabolic process 4.08% (4/98) 2.41 0.007096 0.022756
GO:0033539 fatty acid beta-oxidation using acyl-CoA dehydrogenase 1.02% (1/98) 7.12 0.007151 0.022774
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 2.04% (2/98) 3.99 0.00722 0.022839
GO:0009311 oligosaccharide metabolic process 2.04% (2/98) 3.98 0.007346 0.023081
GO:0140657 ATP-dependent activity 6.12% (6/98) 1.82 0.007397 0.023084
GO:0004516 nicotinate phosphoribosyltransferase activity 1.02% (1/98) 7.03 0.007636 0.023516
GO:0034355 NAD salvage 1.02% (1/98) 7.03 0.007636 0.023516
GO:0004300 enoyl-CoA hydratase activity 1.02% (1/98) 6.97 0.00796 0.023576
GO:0043228 non-membrane-bounded organelle 5.1% (5/98) 2.03 0.007923 0.023616
GO:0051540 metal cluster binding 2.04% (2/98) 3.93 0.007786 0.023665
GO:0051536 iron-sulfur cluster binding 2.04% (2/98) 3.93 0.007786 0.023665
GO:0043232 intracellular non-membrane-bounded organelle 5.1% (5/98) 2.03 0.007919 0.023756
GO:0090575 RNA polymerase II transcription regulator complex 2.04% (2/98) 3.92 0.007898 0.023849
GO:0030620 U2 snRNA binding 1.02% (1/98) 6.94 0.008122 0.023903
GO:0019365 pyridine nucleotide salvage 1.02% (1/98) 6.85 0.008607 0.024705
GO:0003677 DNA binding 8.16% (8/98) 1.47 0.008528 0.024785
GO:0000428 DNA-directed RNA polymerase complex 2.04% (2/98) 3.86 0.008604 0.02485
GO:0016072 rRNA metabolic process 3.06% (3/98) 2.86 0.008514 0.024898
GO:0005516 calmodulin binding 2.04% (2/98) 3.82 0.009077 0.025893
GO:0034654 nucleobase-containing compound biosynthetic process 4.08% (4/98) 2.25 0.010265 0.029105
GO:1990904 ribonucleoprotein complex 4.08% (4/98) 2.25 0.010373 0.029233
GO:0003700 DNA-binding transcription factor activity 5.1% (5/98) 1.93 0.010578 0.029632
GO:0032774 RNA biosynthetic process 3.06% (3/98) 2.73 0.01072 0.029672
GO:1990116 ribosome-associated ubiquitin-dependent protein catabolic process 1.02% (1/98) 6.54 0.010707 0.029813
GO:0097747 RNA polymerase activity 2.04% (2/98) 3.66 0.011101 0.030364
GO:0034062 5'-3' RNA polymerase activity 2.04% (2/98) 3.66 0.011101 0.030364
GO:0070478 nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay 1.02% (1/98) 6.41 0.011675 0.031747
GO:1990112 RQC complex 1.02% (1/98) 6.39 0.011836 0.031998
GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity 1.02% (1/98) 6.37 0.011997 0.032247
GO:0030880 RNA polymerase complex 2.04% (2/98) 3.59 0.012237 0.032703
GO:0019318 hexose metabolic process 2.04% (2/98) 3.56 0.012696 0.033544
GO:0070925 organelle assembly 2.04% (2/98) 3.56 0.012789 0.033598
GO:0005856 cytoskeleton 2.04% (2/98) 3.56 0.012673 0.033674
GO:0005886 plasma membrane 6.12% (6/98) 1.64 0.013132 0.033924
GO:0007015 actin filament organization 2.04% (2/98) 3.54 0.013116 0.034072
GO:0006508 proteolysis 5.1% (5/98) 1.85 0.013064 0.034127
GO:0051015 actin filament binding 2.04% (2/98) 3.49 0.013973 0.035897
GO:0050789 regulation of biological process 11.22% (11/98) 1.08 0.014728 0.037629
GO:0022618 protein-RNA complex assembly 2.04% (2/98) 3.39 0.015936 0.040493
GO:0065003 protein-containing complex assembly 3.06% (3/98) 2.5 0.016427 0.041289
GO:0055087 Ski complex 1.02% (1/98) 5.92 0.016339 0.041291
GO:0071826 protein-RNA complex organization 2.04% (2/98) 3.34 0.016867 0.041943
GO:0016973 poly(A)+ mRNA export from nucleus 1.02% (1/98) 5.87 0.01698 0.042
GO:0072344 rescue of stalled ribosome 1.02% (1/98) 5.88 0.01682 0.04205
GO:0044271 cellular nitrogen compound biosynthetic process 5.1% (5/98) 1.75 0.017227 0.042384
GO:0044242 cellular lipid catabolic process 2.04% (2/98) 3.3 0.017848 0.043226
GO:0046914 transition metal ion binding 6.12% (6/98) 1.54 0.017757 0.04323
GO:0043565 sequence-specific DNA binding 4.08% (4/98) 2.02 0.017726 0.043382
GO:0032261 purine nucleotide salvage 1.02% (1/98) 5.76 0.018263 0.044
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds 2.04% (2/98) 3.27 0.018524 0.044402
GO:0003774 cytoskeletal motor activity 2.04% (2/98) 3.27 0.018688 0.044565
GO:0030258 lipid modification 2.04% (2/98) 3.26 0.018825 0.044663
GO:0016042 lipid catabolic process 2.04% (2/98) 3.25 0.019018 0.044664
GO:0051640 organelle localization 2.04% (2/98) 3.25 0.018991 0.044825
GO:0005996 monosaccharide metabolic process 2.04% (2/98) 3.22 0.019797 0.045572
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding 2.04% (2/98) 3.22 0.019713 0.045604
GO:0003779 actin binding 2.04% (2/98) 3.23 0.019517 0.045605
GO:0043023 ribosomal large subunit binding 1.02% (1/98) 5.65 0.019703 0.045809
GO:0016491 oxidoreductase activity 7.14% (7/98) 1.35 0.020264 0.046417
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (98) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms