Coexpression cluster: Cluster_737 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0036440 citrate synthase activity 4.55% (3/66) 10.57 0.0 0.0
GO:0004108 citrate (Si)-synthase activity 4.55% (3/66) 10.57 0.0 0.0
GO:0061608 nuclear import signal receptor activity 6.06% (4/66) 7.77 0.0 0.0
GO:0008418 protein-N-terminal asparagine amidohydrolase activity 4.55% (3/66) 9.25 0.0 1e-06
GO:0051020 GTPase binding 6.06% (4/66) 7.05 0.0 1e-06
GO:0031267 small GTPase binding 6.06% (4/66) 7.05 0.0 1e-06
GO:0051649 establishment of localization in cell 13.64% (9/66) 3.83 0.0 1e-06
GO:0008139 nuclear localization sequence binding 6.06% (4/66) 7.11 0.0 1e-06
GO:0005575 cellular_component 50.0% (33/66) 1.32 0.0 2e-06
GO:0140142 nucleocytoplasmic carrier activity 6.06% (4/66) 6.73 0.0 3e-06
GO:0009903 chloroplast avoidance movement 4.55% (3/66) 7.92 0.0 5e-06
GO:0019750 chloroplast localization 4.55% (3/66) 7.92 0.0 5e-06
GO:0009902 chloroplast relocation 4.55% (3/66) 7.92 0.0 5e-06
GO:0009904 chloroplast accumulation movement 4.55% (3/66) 7.92 0.0 5e-06
GO:0051644 plastid localization 4.55% (3/66) 7.92 0.0 5e-06
GO:0051667 establishment of plastid localization 4.55% (3/66) 7.92 0.0 5e-06
GO:0004587 ornithine aminotransferase activity 3.03% (2/66) 11.35 0.0 6e-06
GO:0019493 arginine catabolic process to proline 3.03% (2/66) 11.35 0.0 6e-06
GO:0019544 arginine catabolic process to glutamate 3.03% (2/66) 11.35 0.0 6e-06
GO:0010121 arginine catabolic process to proline via ornithine 3.03% (2/66) 11.35 0.0 6e-06
GO:0005048 signal sequence binding 6.06% (4/66) 6.11 0.0 7e-06
GO:0042277 peptide binding 6.06% (4/66) 6.0 1e-06 9e-06
GO:0046912 acyltransferase activity, acyl groups converted into alkyl on transfer 4.55% (3/66) 7.56 1e-06 9e-06
GO:0140104 molecular carrier activity 6.06% (4/66) 5.86 1e-06 1.2e-05
GO:0031011 Ino80 complex 4.55% (3/66) 7.25 1e-06 1.3e-05
GO:0051169 nuclear transport 7.58% (5/66) 4.8 1e-06 1.4e-05
GO:0006913 nucleocytoplasmic transport 7.58% (5/66) 4.8 1e-06 1.4e-05
GO:0034504 protein localization to nucleus 6.06% (4/66) 5.77 1e-06 1.4e-05
GO:0006606 protein import into nucleus 6.06% (4/66) 5.77 1e-06 1.4e-05
GO:0051170 import into nucleus 6.06% (4/66) 5.75 1e-06 1.4e-05
GO:0006527 arginine catabolic process 3.03% (2/66) 10.25 1e-06 1.4e-05
GO:0033218 amide binding 6.06% (4/66) 5.64 1e-06 1.6e-05
GO:0097346 INO80-type complex 4.55% (3/66) 6.78 3e-06 3.3e-05
GO:0072594 establishment of protein localization to organelle 7.58% (5/66) 4.4 4e-06 4.4e-05
GO:0033365 protein localization to organelle 7.58% (5/66) 4.29 6e-06 6.3e-05
GO:0070603 SWI/SNF superfamily-type complex 4.55% (3/66) 6.31 8e-06 8e-05
GO:0005759 mitochondrial matrix 4.55% (3/66) 6.15 1.1e-05 0.000104
GO:0043605 amide catabolic process 3.03% (2/66) 8.69 1.1e-05 0.000104
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds 6.06% (4/66) 4.84 1.3e-05 0.000114
GO:0008150 biological_process 53.03% (35/66) 0.93 1.4e-05 0.000119
GO:0006099 tricarboxylic acid cycle 4.55% (3/66) 5.97 1.7e-05 0.000141
GO:1904949 ATPase complex 4.55% (3/66) 5.94 1.8e-05 0.000146
GO:0005515 protein binding 24.24% (16/66) 1.69 2.2e-05 0.000179
GO:0051641 cellular localization 10.61% (7/66) 3.0 2.8e-05 0.000202
GO:0006560 proline metabolic process 3.03% (2/66) 8.0 2.9e-05 0.000203
GO:0005634 nucleus 16.67% (11/66) 2.17 2.9e-05 0.000203
GO:0031974 membrane-enclosed lumen 4.55% (3/66) 5.72 2.8e-05 0.000204
GO:0070013 intracellular organelle lumen 4.55% (3/66) 5.72 2.8e-05 0.000204
GO:0043233 organelle lumen 4.55% (3/66) 5.72 2.8e-05 0.000204
GO:0110165 cellular anatomical entity 39.39% (26/66) 1.16 2.7e-05 0.000211
GO:0046907 intracellular transport 9.09% (6/66) 3.29 3.6e-05 0.000245
GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides 4.55% (3/66) 5.43 5.1e-05 0.000336
GO:0009658 chloroplast organization 4.55% (3/66) 5.35 6e-05 0.000392
GO:0009657 plastid organization 4.55% (3/66) 5.26 7.2e-05 0.00046
GO:0009065 glutamine family amino acid catabolic process 3.03% (2/66) 7.26 8.3e-05 0.000519
GO:0019899 enzyme binding 6.06% (4/66) 4.14 8.4e-05 0.00052
GO:0051656 establishment of organelle localization 4.55% (3/66) 5.17 8.7e-05 0.000524
GO:0016308 1-phosphatidylinositol-4-phosphate 5-kinase activity 3.03% (2/66) 7.15 9.6e-05 0.000569
GO:0006525 arginine metabolic process 3.03% (2/66) 7.03 0.000113 0.00066
GO:0051234 establishment of localization 15.15% (10/66) 1.96 0.000223 0.001281
GO:0045184 establishment of protein localization 7.58% (5/66) 3.18 0.000239 0.001354
GO:0006511 ubiquitin-dependent protein catabolic process 6.06% (4/66) 3.74 0.000245 0.001364
GO:0051179 localization 15.15% (10/66) 1.91 0.000298 0.001634
GO:0006536 glutamate metabolic process 3.03% (2/66) 6.31 0.000305 0.001645
GO:0006508 proteolysis 9.09% (6/66) 2.68 0.000354 0.00185
GO:0019941 modification-dependent protein catabolic process 6.06% (4/66) 3.6 0.00035 0.00186
GO:0042802 identical protein binding 3.03% (2/66) 6.17 0.000372 0.001916
GO:0043632 modification-dependent macromolecule catabolic process 6.06% (4/66) 3.54 0.000409 0.001962
GO:0051640 organelle localization 4.55% (3/66) 4.41 0.000405 0.001966
GO:0033036 macromolecule localization 7.58% (5/66) 3.02 0.0004 0.001973
GO:0070727 cellular macromolecule localization 7.58% (5/66) 3.02 0.000397 0.001984
GO:0008104 protein localization 7.58% (5/66) 3.02 0.000393 0.001992
GO:0006886 intracellular protein transport 6.06% (4/66) 3.5 0.000457 0.002159
GO:0003674 molecular_function 56.06% (37/66) 0.66 0.00047 0.002164
GO:0140513 nuclear protein-containing complex 9.09% (6/66) 2.61 0.000464 0.002165
GO:0043231 intracellular membrane-bounded organelle 19.7% (13/66) 1.49 0.000595 0.002702
GO:0043227 membrane-bounded organelle 19.7% (13/66) 1.48 0.000639 0.002862
GO:0043603 amide metabolic process 6.06% (4/66) 3.27 0.000826 0.003653
GO:0051603 proteolysis involved in protein catabolic process 6.06% (4/66) 3.26 0.000849 0.003706
GO:0071705 nitrogen compound transport 7.58% (5/66) 2.75 0.000909 0.003921
GO:1901575 organic substance catabolic process 9.09% (6/66) 2.4 0.000987 0.004202
GO:0015031 protein transport 6.06% (4/66) 3.16 0.001077 0.004533
GO:0052742 phosphatidylinositol kinase activity 3.03% (2/66) 5.36 0.001122 0.004665
GO:0009056 catabolic process 9.09% (6/66) 2.33 0.001272 0.005103
GO:0005737 cytoplasm 12.12% (8/66) 1.91 0.001261 0.005116
GO:0046854 phosphatidylinositol phosphate biosynthetic process 3.03% (2/66) 5.29 0.001251 0.005137
GO:0009064 glutamine family amino acid metabolic process 3.03% (2/66) 5.13 0.001545 0.006128
GO:0005643 nuclear pore 3.03% (2/66) 5.09 0.001622 0.006359
GO:0044238 primary metabolic process 28.79% (19/66) 1.0 0.001896 0.00735
GO:0008483 transaminase activity 3.03% (2/66) 4.93 0.00202 0.007574
GO:0016769 transferase activity, transferring nitrogenous groups 3.03% (2/66) 4.93 0.00202 0.007574
GO:0003700 DNA-binding transcription factor activity 7.58% (5/66) 2.5 0.001976 0.007574
GO:0043226 organelle 19.7% (13/66) 1.27 0.00235 0.008624
GO:0043229 intracellular organelle 19.7% (13/66) 1.27 0.002348 0.008709
GO:0071702 organic substance transport 7.58% (5/66) 2.42 0.002449 0.008892
GO:0008152 metabolic process 30.3% (20/66) 0.92 0.002782 0.009998
GO:0001727 lipid kinase activity 3.03% (2/66) 4.64 0.00301 0.010707
GO:0009057 macromolecule catabolic process 6.06% (4/66) 2.75 0.003079 0.010839
GO:1901606 alpha-amino acid catabolic process 3.03% (2/66) 4.55 0.00339 0.011815
GO:0071704 organic substance metabolic process 28.79% (19/66) 0.91 0.003808 0.013137
GO:0030170 pyridoxal phosphate binding 3.03% (2/66) 4.44 0.003936 0.013184
GO:0070279 vitamin B6 binding 3.03% (2/66) 4.44 0.003936 0.013184
GO:0009063 amino acid catabolic process 3.03% (2/66) 4.45 0.003872 0.013228
GO:0140110 transcription regulator activity 7.58% (5/66) 2.24 0.004175 0.01385
GO:0016740 transferase activity 18.18% (12/66) 1.23 0.00445 0.014483
GO:0043648 dicarboxylic acid metabolic process 3.03% (2/66) 4.35 0.004433 0.014565
GO:0043565 sequence-specific DNA binding 6.06% (4/66) 2.59 0.00455 0.014672
GO:0006661 phosphatidylinositol biosynthetic process 3.03% (2/66) 4.32 0.004637 0.014813
GO:0005769 early endosome 1.52% (1/66) 7.6 0.005149 0.016298
GO:0018822 nitrile hydratase activity 1.52% (1/66) 7.4 0.005914 0.017897
GO:0016815 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in nitriles 1.52% (1/66) 7.4 0.005914 0.017897
GO:0000257 nitrilase activity 1.52% (1/66) 7.4 0.005914 0.017897
GO:0051410 detoxification of nitrogen compound 1.52% (1/66) 7.4 0.005914 0.017897
GO:0055037 recycling endosome 1.52% (1/66) 7.4 0.005914 0.017897
GO:0019842 vitamin binding 3.03% (2/66) 4.12 0.006042 0.018125
GO:0009987 cellular process 31.82% (21/66) 0.79 0.00624 0.01856
GO:0000314 organellar small ribosomal subunit 1.52% (1/66) 7.2 0.006787 0.019843
GO:0005763 mitochondrial small ribosomal subunit 1.52% (1/66) 7.2 0.006787 0.019843
GO:0043014 alpha-tubulin binding 1.52% (1/66) 7.15 0.007005 0.020309
GO:1901564 organonitrogen compound metabolic process 18.18% (12/66) 1.13 0.007577 0.021783
GO:0046474 glycerophospholipid biosynthetic process 3.03% (2/66) 3.89 0.00822 0.023437
GO:1990817 poly(A) RNA polymerase activity 1.52% (1/66) 6.85 0.00864 0.024433
GO:0019538 protein metabolic process 15.15% (10/66) 1.22 0.00986 0.027657
GO:0071203 WASH complex 1.52% (1/66) 6.57 0.01049 0.029185
GO:0032991 protein-containing complex 12.12% (8/66) 1.39 0.011063 0.029819
GO:0003824 catalytic activity 30.3% (20/66) 0.74 0.010996 0.029872
GO:0006807 nitrogen compound metabolic process 22.73% (15/66) 0.91 0.01092 0.029899
GO:0045017 glycerolipid biosynthetic process 3.03% (2/66) 3.67 0.010915 0.030127
GO:0046488 phosphatidylinositol metabolic process 3.03% (2/66) 3.64 0.011371 0.03041
GO:0043015 gamma-tubulin binding 1.52% (1/66) 6.42 0.011576 0.030721
GO:0045036 protein targeting to chloroplast 1.52% (1/66) 6.28 0.01277 0.03363
GO:0032456 endocytic recycling 1.52% (1/66) 6.27 0.012878 0.033659
GO:0004652 obsolete polynucleotide adenylyltransferase activity 1.52% (1/66) 6.26 0.012987 0.033687
GO:0016054 organic acid catabolic process 3.03% (2/66) 3.5 0.013672 0.034684
GO:0046395 carboxylic acid catabolic process 3.03% (2/66) 3.5 0.013672 0.034684
GO:0008654 phospholipid biosynthetic process 3.03% (2/66) 3.51 0.013496 0.034747
GO:1901565 organonitrogen compound catabolic process 4.55% (3/66) 2.56 0.014479 0.036462
GO:0005488 binding 34.85% (23/66) 0.63 0.015555 0.038887
GO:0034314 Arp2/3 complex-mediated actin nucleation 1.52% (1/66) 5.89 0.016775 0.041635
GO:0006650 glycerophospholipid metabolic process 3.03% (2/66) 3.32 0.01737 0.042805
GO:2001141 regulation of RNA biosynthetic process 7.58% (5/66) 1.7 0.019141 0.046504
GO:0006355 regulation of DNA-templated transcription 7.58% (5/66) 1.7 0.019141 0.046504
GO:0006412 translation 3.03% (2/66) 3.21 0.020095 0.048481
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (66) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms