Coexpression cluster: Cluster_272 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0141047 molecular tag activity 11.25% (9/80) 7.88 0.0 0.0
GO:0031386 protein tag activity 11.25% (9/80) 7.88 0.0 0.0
GO:0044389 ubiquitin-like protein ligase binding 10.0% (8/80) 7.04 0.0 0.0
GO:0031625 ubiquitin protein ligase binding 10.0% (8/80) 7.08 0.0 0.0
GO:0051603 proteolysis involved in protein catabolic process 13.75% (11/80) 4.44 0.0 0.0
GO:0043226 organelle 35.0% (28/80) 2.1 0.0 0.0
GO:0043231 intracellular membrane-bounded organelle 32.5% (26/80) 2.21 0.0 0.0
GO:0043229 intracellular organelle 35.0% (28/80) 2.1 0.0 0.0
GO:0043632 modification-dependent macromolecule catabolic process 12.5% (10/80) 4.58 0.0 0.0
GO:0043227 membrane-bounded organelle 32.5% (26/80) 2.2 0.0 0.0
GO:0019899 enzyme binding 11.25% (9/80) 5.03 0.0 0.0
GO:0019941 modification-dependent protein catabolic process 12.5% (10/80) 4.64 0.0 0.0
GO:0005634 nucleus 23.75% (19/80) 2.68 0.0 0.0
GO:0009057 macromolecule catabolic process 12.5% (10/80) 3.79 0.0 0.0
GO:0032446 protein modification by small protein conjugation 11.25% (9/80) 3.99 0.0 0.0
GO:0110165 cellular anatomical entity 45.0% (36/80) 1.35 0.0 0.0
GO:0043130 ubiquitin binding 6.25% (5/80) 5.97 0.0 1e-06
GO:0006508 proteolysis 13.75% (11/80) 3.28 0.0 1e-06
GO:0043687 post-translational protein modification 12.5% (10/80) 3.51 0.0 1e-06
GO:0032182 ubiquitin-like protein binding 6.25% (5/80) 5.9 0.0 1e-06
GO:0070647 protein modification by small protein conjugation or removal 11.25% (9/80) 3.66 0.0 1e-06
GO:0016567 protein ubiquitination 10.0% (8/80) 3.9 0.0 2e-06
GO:0005575 cellular_component 46.25% (37/80) 1.21 0.0 2e-06
GO:0005737 cytoplasm 17.5% (14/80) 2.44 0.0 5e-06
GO:1901575 organic substance catabolic process 12.5% (10/80) 2.86 1e-06 2.4e-05
GO:0009056 catabolic process 12.5% (10/80) 2.79 2e-06 3.6e-05
GO:0043328 protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway 3.75% (3/80) 6.75 3e-06 6e-05
GO:0005515 protein binding 23.75% (19/80) 1.66 5e-06 9.3e-05
GO:0032511 late endosome to vacuole transport via multivesicular body sorting pathway 3.75% (3/80) 6.28 9e-06 0.000145
GO:0071985 multivesicular body sorting pathway 3.75% (3/80) 5.98 1.6e-05 0.000252
GO:0032509 endosome transport via multivesicular body sorting pathway 3.75% (3/80) 5.98 1.6e-05 0.000252
GO:0045324 late endosome to vacuole transport 3.75% (3/80) 5.67 3.1e-05 0.000467
GO:0072665 protein localization to vacuole 3.75% (3/80) 5.59 3.7e-05 0.000514
GO:0072666 establishment of protein localization to vacuole 3.75% (3/80) 5.59 3.7e-05 0.000514
GO:0008150 biological_process 48.75% (39/80) 0.81 5.7e-05 0.000774
GO:0043170 macromolecule metabolic process 26.25% (21/80) 1.27 9.8e-05 0.001303
GO:0007034 vacuolar transport 3.75% (3/80) 4.95 0.000137 0.001771
GO:0019538 protein metabolic process 18.75% (15/80) 1.53 0.000178 0.002238
GO:0006397 mRNA processing 5.0% (4/80) 3.82 0.000202 0.002466
GO:0072594 establishment of protein localization to organelle 5.0% (4/80) 3.81 0.000208 0.002478
GO:0030544 Hsp70 protein binding 2.5% (2/80) 6.52 0.000231 0.002684
GO:0016197 endosomal transport 3.75% (3/80) 4.68 0.000238 0.002703
GO:0003674 molecular_function 55.0% (44/80) 0.64 0.000257 0.002851
GO:0033365 protein localization to organelle 5.0% (4/80) 3.69 0.00028 0.003037
GO:0035091 phosphatidylinositol binding 3.75% (3/80) 4.55 0.000304 0.003219
GO:0006807 nitrogen compound metabolic process 26.25% (21/80) 1.12 0.000411 0.004266
GO:0016192 vesicle-mediated transport 6.25% (5/80) 2.93 0.000531 0.005394
GO:0000398 mRNA splicing, via spliceosome 3.75% (3/80) 4.25 0.000562 0.00559
GO:0036211 protein modification process 15.0% (12/80) 1.59 0.000577 0.005619
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 3.75% (3/80) 4.17 0.000658 0.006274
GO:0016407 acetyltransferase activity 3.75% (3/80) 4.13 0.000714 0.006674
GO:1901564 organonitrogen compound metabolic process 20.0% (16/80) 1.27 0.000789 0.007238
GO:0000375 RNA splicing, via transesterification reactions 3.75% (3/80) 4.06 0.000826 0.007431
GO:0005543 phospholipid binding 3.75% (3/80) 4.02 0.000892 0.00788
GO:0048522 positive regulation of cellular process 5.0% (4/80) 3.21 0.000959 0.007884
GO:0042026 protein refolding 2.5% (2/80) 5.52 0.000912 0.007914
GO:0031072 heat shock protein binding 2.5% (2/80) 5.49 0.000951 0.007961
GO:0006886 intracellular protein transport 5.0% (4/80) 3.22 0.000945 0.008046
GO:0008284 positive regulation of cell population proliferation 1.25% (1/80) 9.87 0.001065 0.008606
GO:0046949 fatty-acyl-CoA biosynthetic process 1.25% (1/80) 9.7 0.001198 0.009364
GO:0009579 thylakoid 2.5% (2/80) 5.32 0.001195 0.009497
GO:0016071 mRNA metabolic process 5.0% (4/80) 3.11 0.001237 0.009517
GO:0008380 RNA splicing 3.75% (3/80) 3.83 0.001305 0.009726
GO:0008152 metabolic process 30.0% (24/80) 0.9 0.001303 0.009867
GO:2000638 regulation of SREBP signaling pathway 1.25% (1/80) 9.29 0.001596 0.011365
GO:2000640 positive regulation of SREBP signaling pathway 1.25% (1/80) 9.29 0.001596 0.011365
GO:0071704 organic substance metabolic process 28.75% (23/80) 0.91 0.00158 0.011596
GO:0044238 primary metabolic process 27.5% (22/80) 0.93 0.001678 0.01177
GO:0043412 macromolecule modification 15.0% (12/80) 1.41 0.001715 0.011857
GO:0048518 positive regulation of biological process 5.0% (4/80) 2.95 0.001855 0.012639
GO:0015031 protein transport 5.0% (4/80) 2.89 0.002194 0.014741
GO:0051087 protein-folding chaperone binding 2.5% (2/80) 4.85 0.002275 0.014868
GO:0061665 SUMO ligase activity 1.25% (1/80) 8.79 0.002261 0.014978
GO:0140674 ATP-dependent histone chaperone activity 1.25% (1/80) 8.55 0.002659 0.01669
GO:0140713 histone chaperone activity 1.25% (1/80) 8.55 0.002659 0.01669
GO:0140849 ATP-dependent H2AZ histone chaperone activity 1.25% (1/80) 8.55 0.002659 0.01669
GO:0042127 regulation of cell population proliferation 1.25% (1/80) 8.35 0.003057 0.018941
GO:0003743 translation initiation factor activity 2.5% (2/80) 4.62 0.003104 0.018984
GO:0045892 negative regulation of DNA-templated transcription 2.5% (2/80) 4.55 0.003387 0.020195
GO:1902679 negative regulation of RNA biosynthetic process 2.5% (2/80) 4.55 0.003387 0.020195
GO:0016413 O-acetyltransferase activity 2.5% (2/80) 4.54 0.003459 0.020373
GO:0019789 SUMO transferase activity 1.25% (1/80) 7.79 0.004517 0.024763
GO:0008289 lipid binding 3.75% (3/80) 3.2 0.004417 0.024788
GO:0051253 negative regulation of RNA metabolic process 2.5% (2/80) 4.35 0.004479 0.02484
GO:0005785 signal recognition particle receptor complex 1.25% (1/80) 7.83 0.004384 0.024895
GO:0003724 RNA helicase activity 2.5% (2/80) 4.37 0.00435 0.025001
GO:0008186 ATP-dependent activity, acting on RNA 2.5% (2/80) 4.37 0.00435 0.025001
GO:0045184 establishment of protein localization 5.0% (4/80) 2.58 0.004675 0.02534
GO:0005794 Golgi apparatus 3.75% (3/80) 3.16 0.004801 0.02573
GO:0009535 chloroplast thylakoid membrane 2.5% (2/80) 4.01 0.006979 0.034321
GO:0055035 plastid thylakoid membrane 2.5% (2/80) 4.01 0.006979 0.034321
GO:0051082 unfolded protein binding 2.5% (2/80) 4.07 0.006511 0.034508
GO:0018205 peptidyl-lysine modification 2.5% (2/80) 4.02 0.006951 0.034899
GO:0051649 establishment of localization in cell 5.0% (4/80) 2.38 0.007572 0.035068
GO:0033036 macromolecule localization 5.0% (4/80) 2.42 0.006918 0.035107
GO:0008135 translation factor activity, RNA binding 2.5% (2/80) 3.96 0.007507 0.035107
GO:0090079 translation regulator activity, nucleic acid binding 2.5% (2/80) 3.96 0.007507 0.035107
GO:0070727 cellular macromolecule localization 5.0% (4/80) 2.42 0.006872 0.035247
GO:0046907 intracellular transport 5.0% (4/80) 2.43 0.006738 0.035319
GO:0008104 protein localization 5.0% (4/80) 2.42 0.006817 0.035347
GO:0008515 sucrose transmembrane transporter activity 1.25% (1/80) 7.07 0.007428 0.035433
GO:0008506 sucrose:proton symporter activity 1.25% (1/80) 7.07 0.007428 0.035433
GO:0009669 sucrose:monoatomic cation symporter activity 1.25% (1/80) 7.07 0.007428 0.035433
GO:0045934 negative regulation of nucleobase-containing compound metabolic process 2.5% (2/80) 3.93 0.007763 0.035604
GO:0034357 photosynthetic membrane 2.5% (2/80) 3.89 0.008192 0.036863
GO:0042651 thylakoid membrane 2.5% (2/80) 3.89 0.008192 0.036863
GO:0030060 L-malate dehydrogenase activity 1.25% (1/80) 6.79 0.009013 0.040179
GO:0045944 positive regulation of transcription by RNA polymerase II 2.5% (2/80) 3.78 0.009541 0.041375
GO:0016925 protein sumoylation 1.25% (1/80) 6.7 0.009541 0.041751
GO:0045182 translation regulator activity 2.5% (2/80) 3.78 0.009525 0.042068
GO:0015157 oligosaccharide transmembrane transporter activity 1.25% (1/80) 6.59 0.010332 0.042853
GO:0005402 carbohydrate:monoatomic cation symporter activity 1.25% (1/80) 6.59 0.010332 0.042853
GO:0015154 disaccharide transmembrane transporter activity 1.25% (1/80) 6.59 0.010332 0.042853
GO:0005351 carbohydrate:proton symporter activity 1.25% (1/80) 6.59 0.010332 0.042853
GO:0097550 transcription preinitiation complex 1.25% (1/80) 6.63 0.010068 0.043265
GO:0005047 signal recognition particle binding 1.25% (1/80) 6.55 0.010595 0.043568
GO:0009967 positive regulation of signal transduction 1.25% (1/80) 6.48 0.011122 0.044581
GO:0010647 positive regulation of cell communication 1.25% (1/80) 6.48 0.011122 0.044581
GO:0023056 positive regulation of signaling 1.25% (1/80) 6.48 0.011122 0.044581
GO:0043486 obsolete histone exchange 1.25% (1/80) 6.4 0.01178 0.046825
GO:1901570 fatty acid derivative biosynthetic process 1.25% (1/80) 6.34 0.012306 0.048513
GO:0006139 nucleobase-containing compound metabolic process 11.25% (9/80) 1.26 0.012748 0.049842
GO:0071705 nitrogen compound transport 5.0% (4/80) 2.15 0.012859 0.049869
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (80) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms