Coexpression cluster: Cluster_270 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0000159 protein phosphatase type 2A complex 11.11% (7/63) 7.96 0.0 0.0
GO:1903293 phosphatase complex 11.11% (7/63) 7.56 0.0 0.0
GO:0008287 protein serine/threonine phosphatase complex 11.11% (7/63) 7.56 0.0 0.0
GO:0005663 DNA replication factor C complex 9.52% (6/63) 8.46 0.0 0.0
GO:0015318 inorganic molecular entity transmembrane transporter activity 19.05% (12/63) 4.75 0.0 0.0
GO:0140657 ATP-dependent activity 25.4% (16/63) 3.87 0.0 0.0
GO:0019208 phosphatase regulator activity 11.11% (7/63) 7.06 0.0 0.0
GO:0003689 DNA clamp loader activity 9.52% (6/63) 8.04 0.0 0.0
GO:0019888 protein phosphatase regulator activity 11.11% (7/63) 7.09 0.0 0.0
GO:0009987 cellular process 60.32% (38/63) 1.71 0.0 0.0
GO:0008150 biological_process 69.84% (44/63) 1.33 0.0 0.0
GO:0008553 P-type proton-exporting transporter activity 7.94% (5/63) 8.18 0.0 0.0
GO:0015698 inorganic anion transport 9.52% (6/63) 6.97 0.0 0.0
GO:0006261 DNA-templated DNA replication 9.52% (6/63) 6.86 0.0 0.0
GO:0098660 inorganic ion transmembrane transport 12.7% (8/63) 4.94 0.0 0.0
GO:0032991 protein-containing complex 28.57% (18/63) 2.63 0.0 0.0
GO:0005575 cellular_component 55.56% (35/63) 1.47 0.0 0.0
GO:0003674 molecular_function 73.02% (46/63) 1.05 0.0 0.0
GO:0051453 regulation of intracellular pH 7.94% (5/63) 6.67 0.0 0.0
GO:0030641 regulation of cellular pH 7.94% (5/63) 6.67 0.0 0.0
GO:0015078 proton transmembrane transporter activity 9.52% (6/63) 5.52 0.0 0.0
GO:0006260 DNA replication 9.52% (6/63) 5.44 0.0 0.0
GO:0140358 P-type transmembrane transporter activity 7.94% (5/63) 6.32 0.0 0.0
GO:0015662 P-type ion transporter activity 7.94% (5/63) 6.32 0.0 0.0
GO:0006885 regulation of pH 7.94% (5/63) 6.35 0.0 0.0
GO:1902494 catalytic complex 17.46% (11/63) 3.41 0.0 0.0
GO:1990547 mitochondrial phosphate ion transmembrane transport 4.76% (3/63) 9.05 0.0 0.0
GO:0019829 ATPase-coupled monoatomic cation transmembrane transporter activity 7.94% (5/63) 5.82 0.0 0.0
GO:1902600 proton transmembrane transport 7.94% (5/63) 5.76 0.0 0.0
GO:0007018 microtubule-based movement 7.94% (5/63) 5.73 0.0 1e-06
GO:0003777 microtubule motor activity 7.94% (5/63) 5.67 0.0 1e-06
GO:0015689 molybdate ion transport 4.76% (3/63) 8.5 0.0 1e-06
GO:0015098 molybdate ion transmembrane transporter activity 4.76% (3/63) 8.5 0.0 1e-06
GO:0022857 transmembrane transporter activity 19.05% (12/63) 2.84 0.0 1e-06
GO:0030234 enzyme regulator activity 11.11% (7/63) 4.23 0.0 1e-06
GO:0022804 active transmembrane transporter activity 12.7% (8/63) 3.76 0.0 1e-06
GO:0030003 intracellular monoatomic cation homeostasis 7.94% (5/63) 5.37 0.0 1e-06
GO:0005315 inorganic phosphate transmembrane transporter activity 4.76% (3/63) 8.19 0.0 1e-06
GO:0035435 phosphate ion transmembrane transport 4.76% (3/63) 8.19 0.0 1e-06
GO:0098772 molecular function regulator activity 11.11% (7/63) 4.14 0.0 1e-06
GO:0005215 transporter activity 19.05% (12/63) 2.77 0.0 1e-06
GO:0003887 DNA-directed DNA polymerase activity 6.35% (4/63) 6.36 0.0 2e-06
GO:0006817 phosphate ion transport 4.76% (3/63) 8.05 0.0 2e-06
GO:0006873 intracellular monoatomic ion homeostasis 7.94% (5/63) 5.26 0.0 2e-06
GO:0008094 ATP-dependent activity, acting on DNA 9.52% (6/63) 4.53 0.0 2e-06
GO:0003774 cytoskeletal motor activity 7.94% (5/63) 5.23 0.0 2e-06
GO:0034061 DNA polymerase activity 6.35% (4/63) 6.12 0.0 3e-06
GO:0055080 monoatomic cation homeostasis 7.94% (5/63) 5.12 0.0 3e-06
GO:0055082 intracellular chemical homeostasis 7.94% (5/63) 5.09 0.0 3e-06
GO:0050801 monoatomic ion homeostasis 7.94% (5/63) 4.99 1e-06 4e-06
GO:0022853 active monoatomic ion transmembrane transporter activity 7.94% (5/63) 4.93 1e-06 5e-06
GO:0019725 cellular homeostasis 7.94% (5/63) 4.89 1e-06 5e-06
GO:0016760 cellulose synthase (UDP-forming) activity 6.35% (4/63) 5.77 1e-06 6e-06
GO:0016759 cellulose synthase activity 6.35% (4/63) 5.72 1e-06 7e-06
GO:0098661 inorganic anion transmembrane transport 4.76% (3/63) 7.23 1e-06 7e-06
GO:0065007 biological regulation 23.81% (15/63) 2.07 2e-06 1.1e-05
GO:0022890 inorganic cation transmembrane transporter activity 9.52% (6/63) 4.05 2e-06 1.1e-05
GO:0030243 cellulose metabolic process 6.35% (4/63) 5.54 2e-06 1.1e-05
GO:0030244 cellulose biosynthetic process 6.35% (4/63) 5.54 2e-06 1.1e-05
GO:0008017 microtubule binding 7.94% (5/63) 4.57 2e-06 1.3e-05
GO:0048878 chemical homeostasis 7.94% (5/63) 4.54 3e-06 1.5e-05
GO:0031305 obsolete integral component of mitochondrial inner membrane 4.76% (3/63) 6.78 3e-06 1.6e-05
GO:0008324 monoatomic cation transmembrane transporter activity 9.52% (6/63) 3.91 3e-06 1.7e-05
GO:0015631 tubulin binding 7.94% (5/63) 4.48 3e-06 1.7e-05
GO:0098655 monoatomic cation transmembrane transport 7.94% (5/63) 4.42 4e-06 2.1e-05
GO:0042592 homeostatic process 7.94% (5/63) 4.41 4e-06 2.1e-05
GO:0051273 beta-glucan metabolic process 6.35% (4/63) 5.2 5e-06 2.3e-05
GO:0098662 inorganic cation transmembrane transport 7.94% (5/63) 4.37 5e-06 2.3e-05
GO:0051274 beta-glucan biosynthetic process 6.35% (4/63) 5.21 5e-06 2.3e-05
GO:0034220 monoatomic ion transmembrane transport 7.94% (5/63) 4.36 5e-06 2.3e-05
GO:0009360 DNA polymerase III complex 3.17% (2/63) 9.27 5e-06 2.3e-05
GO:0007017 microtubule-based process 7.94% (5/63) 4.34 5e-06 2.4e-05
GO:0065008 regulation of biological quality 7.94% (5/63) 4.32 6e-06 2.6e-05
GO:0015075 monoatomic ion transmembrane transporter activity 9.52% (6/63) 3.63 1e-05 4.3e-05
GO:0006281 DNA repair 9.52% (6/63) 3.61 1e-05 4.5e-05
GO:0140097 catalytic activity, acting on DNA 9.52% (6/63) 3.61 1e-05 4.5e-05
GO:0009250 glucan biosynthetic process 6.35% (4/63) 4.84 1.3e-05 5.4e-05
GO:0005750 mitochondrial respiratory chain complex III 3.17% (2/63) 8.58 1.3e-05 5.5e-05
GO:0045275 respiratory chain complex III 3.17% (2/63) 8.58 1.3e-05 5.5e-05
GO:0006974 DNA damage response 9.52% (6/63) 3.48 1.8e-05 7.1e-05
GO:0006810 transport 17.46% (11/63) 2.23 1.9e-05 7.6e-05
GO:0015976 carbon utilization 3.17% (2/63) 8.29 2e-05 7.7e-05
GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c 3.17% (2/63) 8.29 2e-05 7.7e-05
GO:0015103 inorganic anion transmembrane transporter activity 4.76% (3/63) 5.78 2.4e-05 9.5e-05
GO:0006812 monoatomic cation transport 7.94% (5/63) 3.85 2.7e-05 0.000105
GO:0042626 ATPase-coupled transmembrane transporter activity 7.94% (5/63) 3.84 2.8e-05 0.000105
GO:0051234 establishment of localization 17.46% (11/63) 2.17 2.9e-05 0.000107
GO:0000271 polysaccharide biosynthetic process 6.35% (4/63) 4.53 3e-05 0.000111
GO:0007165 signal transduction 11.11% (7/63) 2.96 3.3e-05 0.00012
GO:0005886 plasma membrane 12.7% (8/63) 2.69 3.3e-05 0.00012
GO:0110165 cellular anatomical entity 39.68% (25/63) 1.17 3.3e-05 0.000121
GO:0015399 primary active transmembrane transporter activity 7.94% (5/63) 3.74 3.8e-05 0.000136
GO:0008092 cytoskeletal protein binding 7.94% (5/63) 3.73 4e-05 0.000137
GO:0044042 glucan metabolic process 6.35% (4/63) 4.43 3.9e-05 0.000137
GO:0051179 localization 17.46% (11/63) 2.12 4e-05 0.000138
GO:0055085 transmembrane transport 12.7% (8/63) 2.65 4.1e-05 0.000139
GO:0003824 catalytic activity 39.68% (25/63) 1.13 5e-05 0.000166
GO:0006839 mitochondrial transport 4.76% (3/63) 5.44 5e-05 0.000167
GO:0005524 ATP binding 19.05% (12/63) 1.95 5.2e-05 0.00017
GO:0006811 monoatomic ion transport 7.94% (5/63) 3.65 5.2e-05 0.000171
GO:0009833 plant-type primary cell wall biogenesis 4.76% (3/63) 5.36 5.8e-05 0.000186
GO:0098800 inner mitochondrial membrane protein complex 4.76% (3/63) 5.37 5.8e-05 0.000186
GO:0070069 cytochrome complex 3.17% (2/63) 7.43 6.6e-05 0.000207
GO:0004089 carbonate dehydratase activity 3.17% (2/63) 7.29 7.9e-05 0.000248
GO:0016020 membrane 20.63% (13/63) 1.78 8.2e-05 0.000254
GO:0035251 UDP-glucosyltransferase activity 6.35% (4/63) 4.09 9.6e-05 0.000294
GO:0034647 histone H3K4me/H3K4me2/H3K4me3 demethylase activity 3.17% (2/63) 7.15 9.6e-05 0.000294
GO:0035639 purine ribonucleoside triphosphate binding 19.05% (12/63) 1.85 0.000102 0.000308
GO:0032453 histone H3K4 demethylase activity 3.17% (2/63) 7.07 0.000107 0.000321
GO:0016051 carbohydrate biosynthetic process 6.35% (4/63) 4.05 0.000108 0.000321
GO:0033554 cellular response to stress 9.52% (6/63) 2.98 0.000118 0.000346
GO:0051716 cellular response to stimulus 9.52% (6/63) 2.93 0.000138 0.000402
GO:0005976 polysaccharide metabolic process 6.35% (4/63) 3.94 0.000142 0.000411
GO:0016779 nucleotidyltransferase activity 6.35% (4/63) 3.92 0.000151 0.000431
GO:0009832 plant-type cell wall biogenesis 4.76% (3/63) 4.81 0.000178 0.000504
GO:0046527 glucosyltransferase activity 6.35% (4/63) 3.81 0.000203 0.00057
GO:0098798 mitochondrial protein-containing complex 4.76% (3/63) 4.72 0.000217 0.000605
GO:0071669 plant-type cell wall organization or biogenesis 4.76% (3/63) 4.6 0.000272 0.000751
GO:0019646 aerobic electron transport chain 3.17% (2/63) 6.37 0.000283 0.000775
GO:0042546 cell wall biogenesis 4.76% (3/63) 4.57 0.000289 0.000785
GO:0141052 histone H3 demethylase activity 3.17% (2/63) 6.01 0.00046 0.001239
GO:0042575 DNA polymerase complex 3.17% (2/63) 5.98 0.000482 0.001287
GO:0005634 nucleus 14.29% (9/63) 1.95 0.000501 0.001327
GO:0032452 histone demethylase activity 3.17% (2/63) 5.92 0.000527 0.001342
GO:0140457 protein demethylase activity 3.17% (2/63) 5.92 0.000527 0.001342
GO:0006259 DNA metabolic process 9.52% (6/63) 2.57 0.000536 0.001355
GO:0032559 adenyl ribonucleotide binding 19.05% (12/63) 1.59 0.000526 0.00136
GO:0005802 trans-Golgi network 4.76% (3/63) 4.26 0.000543 0.001361
GO:1901265 nucleoside phosphate binding 20.63% (13/63) 1.51 0.000522 0.001362
GO:0000166 nucleotide binding 20.63% (13/63) 1.51 0.000522 0.001362
GO:0022904 respiratory electron transport chain 3.17% (2/63) 5.86 0.000571 0.001421
GO:1902495 transmembrane transporter complex 3.17% (2/63) 5.78 0.000631 0.001558
GO:0098803 respiratory chain complex 3.17% (2/63) 5.76 0.000653 0.0016
GO:1901363 heterocyclic compound binding 20.63% (13/63) 1.47 0.000674 0.001628
GO:0009060 aerobic respiration 3.17% (2/63) 5.74 0.000671 0.001633
GO:0098791 Golgi apparatus subcompartment 4.76% (3/63) 4.13 0.000701 0.001679
GO:0045333 cellular respiration 3.17% (2/63) 5.7 0.000713 0.001696
GO:0036094 small molecule binding 20.63% (13/63) 1.46 0.000718 0.001696
GO:0030554 adenyl nucleotide binding 19.05% (12/63) 1.53 0.000741 0.001738
GO:0031984 organelle subcompartment 4.76% (3/63) 4.1 0.000751 0.001749
GO:0032555 purine ribonucleotide binding 19.05% (12/63) 1.51 0.000857 0.001982
GO:0008194 UDP-glycosyltransferase activity 6.35% (4/63) 3.24 0.00088 0.002019
GO:0032553 ribonucleotide binding 19.05% (12/63) 1.5 0.00092 0.002098
GO:0071554 cell wall organization or biogenesis 4.76% (3/63) 3.96 0.000989 0.002224
GO:1990351 transporter complex 3.17% (2/63) 5.45 0.000996 0.002224
GO:0097367 carbohydrate derivative binding 19.05% (12/63) 1.49 0.000983 0.002225
GO:0044085 cellular component biogenesis 4.76% (3/63) 3.94 0.001033 0.002291
GO:0050794 regulation of cellular process 15.87% (10/63) 1.65 0.00116 0.002555
GO:0017076 purine nucleotide binding 19.05% (12/63) 1.46 0.001195 0.002615
GO:0009991 response to extracellular stimulus 3.17% (2/63) 5.27 0.001269 0.00274
GO:0031667 response to nutrient levels 3.17% (2/63) 5.28 0.001264 0.002747
GO:0015291 secondary active transmembrane transporter activity 4.76% (3/63) 3.79 0.001395 0.002992
GO:0032451 demethylase activity 3.17% (2/63) 5.14 0.001523 0.003225
GO:0016758 hexosyltransferase activity 6.35% (4/63) 3.03 0.00152 0.003238
GO:0015980 energy derivation by oxidation of organic compounds 3.17% (2/63) 5.12 0.001557 0.003274
GO:0050789 regulation of biological process 15.87% (10/63) 1.58 0.001675 0.003501
GO:0140640 catalytic activity, acting on a nucleic acid 9.52% (6/63) 2.24 0.001707 0.003544
GO:0016706 2-oxoglutarate-dependent dioxygenase activity 3.17% (2/63) 4.95 0.001966 0.004056
GO:0044237 cellular metabolic process 25.4% (16/63) 1.11 0.00206 0.00417
GO:0043168 anion binding 19.05% (12/63) 1.36 0.002038 0.004179
GO:0009055 electron transfer activity 3.17% (2/63) 4.92 0.002054 0.004185
GO:0000274 mitochondrial proton-transporting ATP synthase, stator stalk 1.59% (1/63) 8.9 0.002095 0.004189
GO:0045265 proton-transporting ATP synthase, stator stalk 1.59% (1/63) 8.9 0.002095 0.004189
GO:1903047 mitotic cell cycle process 4.76% (3/63) 3.53 0.00231 0.004592
GO:0022900 electron transport chain 3.17% (2/63) 4.83 0.002331 0.004605
GO:0016836 hydro-lyase activity 3.17% (2/63) 4.7 0.002769 0.005439
GO:0042776 proton motive force-driven mitochondrial ATP synthesis 1.59% (1/63) 8.27 0.003245 0.006334
GO:1901702 salt transmembrane transporter activity 4.76% (3/63) 3.35 0.003294 0.006392
GO:1990204 oxidoreductase complex 3.17% (2/63) 4.57 0.003316 0.006396
GO:0050291 sphingosine N-acyltransferase activity 1.59% (1/63) 8.05 0.003767 0.007224
GO:0050896 response to stimulus 12.7% (8/63) 1.65 0.003828 0.007297
GO:0000785 chromatin 3.17% (2/63) 4.42 0.004039 0.007655
GO:0043167 ion binding 22.22% (14/63) 1.11 0.004274 0.008054
GO:0005856 cytoskeleton 3.17% (2/63) 4.2 0.005419 0.010152
GO:0051213 dioxygenase activity 3.17% (2/63) 4.03 0.006815 0.012695
GO:0016757 glycosyltransferase activity 6.35% (4/63) 2.41 0.006862 0.012711
GO:0140993 histone modifying activity 3.17% (2/63) 3.97 0.007363 0.013561
GO:0016835 carbon-oxygen lyase activity 3.17% (2/63) 3.93 0.007787 0.014261
GO:0016491 oxidoreductase activity 9.52% (6/63) 1.77 0.0083 0.015116
GO:0009059 macromolecule biosynthetic process 6.35% (4/63) 2.33 0.008383 0.015182
GO:0016740 transferase activity 17.46% (11/63) 1.17 0.008607 0.015503
GO:0098796 membrane protein complex 4.76% (3/63) 2.77 0.009919 0.01767
GO:0032993 protein-DNA complex 3.17% (2/63) 3.75 0.009919 0.017766
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) 1.59% (1/63) 6.56 0.010534 0.018664
GO:0022402 cell cycle process 4.76% (3/63) 2.69 0.011576 0.020399
GO:0044249 cellular biosynthetic process 9.52% (6/63) 1.66 0.011729 0.020558
GO:0016887 ATP hydrolysis activity 4.76% (3/63) 2.65 0.0124 0.021388
GO:0043226 organelle 17.46% (11/63) 1.1 0.012363 0.021437
GO:0043229 intracellular organelle 17.46% (11/63) 1.1 0.012354 0.021537
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism 1.59% (1/63) 6.12 0.014262 0.024216
GO:0015252 proton channel activity 1.59% (1/63) 6.12 0.014262 0.024216
GO:0046513 ceramide biosynthetic process 1.59% (1/63) 6.11 0.014366 0.024265
GO:0006338 chromatin remodeling 3.17% (2/63) 3.48 0.014152 0.024282
GO:0097159 organic cyclic compound binding 25.4% (16/63) 0.82 0.014613 0.024555
GO:0005975 carbohydrate metabolic process 6.35% (4/63) 2.09 0.014787 0.02472
GO:0006325 chromatin organization 3.17% (2/63) 3.35 0.016638 0.027674
GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain 1.59% (1/63) 5.88 0.016843 0.027873
GO:1901576 organic substance biosynthetic process 9.52% (6/63) 1.54 0.017091 0.028139
GO:0006754 ATP biosynthetic process 1.59% (1/63) 5.83 0.017462 0.028463
GO:0015986 proton motive force-driven ATP synthesis 1.59% (1/63) 5.83 0.017462 0.028463
GO:0034641 cellular nitrogen compound metabolic process 12.7% (8/63) 1.25 0.018702 0.030333
GO:0009058 biosynthetic process 9.52% (6/63) 1.46 0.021447 0.034613
GO:0061695 transferase complex, transferring phosphorus-containing groups 3.17% (2/63) 3.1 0.023129 0.037143
GO:0009145 purine nucleoside triphosphate biosynthetic process 1.59% (1/63) 5.37 0.02383 0.037895
GO:0009206 purine ribonucleoside triphosphate biosynthetic process 1.59% (1/63) 5.37 0.02383 0.037895
GO:0006672 ceramide metabolic process 1.59% (1/63) 5.35 0.024239 0.038359
GO:0006091 generation of precursor metabolites and energy 3.17% (2/63) 3.05 0.024471 0.038539
GO:0006950 response to stress 9.52% (6/63) 1.41 0.025334 0.039517
GO:0071824 protein-DNA complex organization 3.17% (2/63) 3.03 0.025323 0.039689
GO:0006139 nucleobase-containing compound metabolic process 11.11% (7/63) 1.24 0.028052 0.043548
GO:0043231 intracellular membrane-bounded organelle 14.29% (9/63) 1.03 0.031083 0.048024
GO:0043227 membrane-bounded organelle 14.29% (9/63) 1.02 0.032403 0.049827
GO:0017111 ribonucleoside triphosphate phosphatase activity 4.76% (3/63) 2.11 0.032662 0.04999
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (63) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms