Coexpression cluster: Cluster_529 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0043043 peptide biosynthetic process 18.35% (20/109) 5.68 0.0 0.0
GO:0006412 translation 17.43% (19/109) 5.73 0.0 0.0
GO:0006518 peptide metabolic process 18.35% (20/109) 5.42 0.0 0.0
GO:0043604 amide biosynthetic process 18.35% (20/109) 5.29 0.0 0.0
GO:0003735 structural constituent of ribosome 15.6% (17/109) 5.75 0.0 0.0
GO:0043603 amide metabolic process 18.35% (20/109) 4.87 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 22.02% (24/109) 4.15 0.0 0.0
GO:0006109 regulation of carbohydrate metabolic process 8.26% (9/109) 8.87 0.0 0.0
GO:0004740 pyruvate dehydrogenase (acetyl-transferring) kinase activity 6.42% (7/109) 10.48 0.0 0.0
GO:0044271 cellular nitrogen compound biosynthetic process 22.02% (24/109) 3.86 0.0 0.0
GO:0005198 structural molecule activity 15.6% (17/109) 5.03 0.0 0.0
GO:0010906 regulation of glucose metabolic process 6.42% (7/109) 10.11 0.0 0.0
GO:0005840 ribosome 12.84% (14/109) 5.69 0.0 0.0
GO:1901576 organic substance biosynthetic process 27.52% (30/109) 3.07 0.0 0.0
GO:0044249 cellular biosynthetic process 26.61% (29/109) 3.14 0.0 0.0
GO:0055062 phosphate ion homeostasis 6.42% (7/109) 9.74 0.0 0.0
GO:0009058 biosynthetic process 27.52% (30/109) 3.0 0.0 0.0
GO:0009059 macromolecule biosynthetic process 18.35% (20/109) 3.86 0.0 0.0
GO:0009987 cellular process 52.29% (57/109) 1.51 0.0 0.0
GO:0046148 pigment biosynthetic process 7.34% (8/109) 6.78 0.0 0.0
GO:0042440 pigment metabolic process 7.34% (8/109) 6.44 0.0 0.0
GO:0044391 ribosomal subunit 9.17% (10/109) 5.39 0.0 0.0
GO:0110165 cellular anatomical entity 48.62% (53/109) 1.46 0.0 0.0
GO:0062012 regulation of small molecule metabolic process 6.42% (7/109) 6.53 0.0 0.0
GO:0008150 biological_process 59.63% (65/109) 1.1 0.0 0.0
GO:1901564 organonitrogen compound metabolic process 31.19% (34/109) 1.91 0.0 0.0
GO:0019538 protein metabolic process 27.52% (30/109) 2.08 0.0 0.0
GO:0005575 cellular_component 48.62% (53/109) 1.28 0.0 0.0
GO:0046905 15-cis-phytoene synthase activity 3.67% (4/109) 9.43 0.0 0.0
GO:0044237 cellular metabolic process 35.78% (39/109) 1.61 0.0 0.0
GO:0071704 organic substance metabolic process 41.28% (45/109) 1.43 0.0 0.0
GO:0008152 metabolic process 42.2% (46/109) 1.4 0.0 0.0
GO:0043228 non-membrane-bounded organelle 12.84% (14/109) 3.36 0.0 0.0
GO:0043232 intracellular non-membrane-bounded organelle 12.84% (14/109) 3.36 0.0 0.0
GO:0016767 geranylgeranyl-diphosphate geranylgeranyltransferase activity 3.67% (4/109) 8.97 0.0 0.0
GO:0098771 inorganic ion homeostasis 6.42% (7/109) 5.52 0.0 0.0
GO:0004337 geranyltranstransferase activity 3.67% (4/109) 8.67 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 22.02% (24/109) 2.04 0.0 0.0
GO:0055085 transmembrane transport 13.76% (15/109) 2.76 0.0 0.0
GO:0016462 pyrophosphatase activity 11.01% (12/109) 3.22 0.0 0.0
GO:0003674 molecular_function 62.39% (68/109) 0.82 0.0 0.0
GO:0015934 large ribosomal subunit 5.5% (6/109) 5.39 0.0 0.0
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 11.01% (12/109) 3.2 0.0 0.0
GO:0005739 mitochondrion 9.17% (10/109) 3.64 0.0 0.0
GO:0016817 hydrolase activity, acting on acid anhydrides 11.01% (12/109) 3.18 0.0 0.0
GO:0042626 ATPase-coupled transmembrane transporter activity 8.26% (9/109) 3.9 0.0 0.0
GO:0015399 primary active transmembrane transporter activity 8.26% (9/109) 3.8 0.0 0.0
GO:0043170 macromolecule metabolic process 30.28% (33/109) 1.48 0.0 0.0
GO:0022857 transmembrane transporter activity 14.68% (16/109) 2.46 0.0 0.0
GO:1990904 ribonucleoprotein complex 9.17% (10/109) 3.42 0.0 0.0
GO:0016109 tetraterpenoid biosynthetic process 3.67% (4/109) 6.91 0.0 0.0
GO:0016117 carotenoid biosynthetic process 3.67% (4/109) 6.91 0.0 0.0
GO:0005215 transporter activity 14.68% (16/109) 2.4 0.0 0.0
GO:0009532 plastid stroma 5.5% (6/109) 4.88 0.0 0.0
GO:0009570 chloroplast stroma 5.5% (6/109) 4.88 0.0 0.0
GO:0044238 primary metabolic process 34.86% (38/109) 1.28 0.0 0.0
GO:0140359 ABC-type transporter activity 6.42% (7/109) 4.29 0.0 0.0
GO:0006807 nitrogen compound metabolic process 31.19% (34/109) 1.37 0.0 1e-06
GO:0048878 chemical homeostasis 6.42% (7/109) 4.23 0.0 1e-06
GO:0016116 carotenoid metabolic process 3.67% (4/109) 6.34 0.0 1e-06
GO:0016108 tetraterpenoid metabolic process 3.67% (4/109) 6.34 0.0 1e-06
GO:0042592 homeostatic process 6.42% (7/109) 4.1 0.0 1e-06
GO:0004659 prenyltransferase activity 3.67% (4/109) 6.12 0.0 2e-06
GO:0006779 porphyrin-containing compound biosynthetic process 3.67% (4/109) 6.02 1e-06 2e-06
GO:0043226 organelle 23.85% (26/109) 1.55 1e-06 2e-06
GO:0043229 intracellular organelle 23.85% (26/109) 1.55 1e-06 2e-06
GO:0006810 transport 15.6% (17/109) 2.07 1e-06 3e-06
GO:0022804 active transmembrane transporter activity 8.26% (9/109) 3.14 1e-06 4e-06
GO:0051234 establishment of localization 15.6% (17/109) 2.01 1e-06 5e-06
GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups 5.5% (6/109) 4.2 1e-06 5e-06
GO:0033014 tetrapyrrole biosynthetic process 3.67% (4/109) 5.7 1e-06 5e-06
GO:0005762 mitochondrial large ribosomal subunit 2.75% (3/109) 7.22 1e-06 5e-06
GO:0000315 organellar large ribosomal subunit 2.75% (3/109) 7.22 1e-06 5e-06
GO:0051179 localization 15.6% (17/109) 1.95 2e-06 7e-06
GO:0016887 ATP hydrolysis activity 7.34% (8/109) 3.27 2e-06 8e-06
GO:0006778 porphyrin-containing compound metabolic process 3.67% (4/109) 5.47 2e-06 9e-06
GO:0004418 hydroxymethylbilane synthase activity 1.83% (2/109) 9.62 3e-06 1.1e-05
GO:0015935 small ribosomal subunit 3.67% (4/109) 5.4 3e-06 1.1e-05
GO:0033013 tetrapyrrole metabolic process 3.67% (4/109) 5.3 4e-06 1.4e-05
GO:0003723 RNA binding 11.01% (12/109) 2.32 6e-06 2e-05
GO:2000904 regulation of starch metabolic process 1.83% (2/109) 8.73 1.1e-05 3.8e-05
GO:0043036 starch grain 1.83% (2/109) 8.07 2.7e-05 9.4e-05
GO:0017111 ribonucleoside triphosphate phosphatase activity 7.34% (8/109) 2.73 3.1e-05 0.000108
GO:0003729 mRNA binding 5.5% (6/109) 3.29 3.9e-05 0.000135
GO:0016114 terpenoid biosynthetic process 3.67% (4/109) 4.41 4.2e-05 0.000143
GO:0032881 regulation of polysaccharide metabolic process 1.83% (2/109) 7.6 5.2e-05 0.000174
GO:0032544 plastid translation 1.83% (2/109) 7.38 6.9e-05 0.000229
GO:0004311 farnesyltranstransferase activity 1.83% (2/109) 7.38 6.9e-05 0.000229
GO:0006721 terpenoid metabolic process 3.67% (4/109) 4.18 7.8e-05 0.000255
GO:0008299 isoprenoid biosynthetic process 3.67% (4/109) 4.1 9.8e-05 0.000317
GO:0140657 ATP-dependent activity 8.26% (9/109) 2.25 0.000128 0.000407
GO:0015995 chlorophyll biosynthetic process 1.83% (2/109) 6.76 0.000166 0.000523
GO:0005982 starch metabolic process 1.83% (2/109) 6.61 0.000204 0.000621
GO:0008239 dipeptidyl-peptidase activity 1.83% (2/109) 6.61 0.000204 0.000621
GO:0006783 heme biosynthetic process 1.83% (2/109) 6.62 0.0002 0.000624
GO:0042168 heme metabolic process 1.83% (2/109) 6.37 0.000282 0.000842
GO:0016020 membrane 15.6% (17/109) 1.37 0.000281 0.00085
GO:0016787 hydrolase activity 14.68% (16/109) 1.42 0.000304 0.000899
GO:0006720 isoprenoid metabolic process 3.67% (4/109) 3.64 0.000325 0.000952
GO:2001070 starch binding 1.83% (2/109) 6.01 0.000464 0.001347
GO:0015994 chlorophyll metabolic process 1.83% (2/109) 5.54 0.000887 0.002546
GO:0018160 peptidyl-pyrromethane cofactor linkage 0.92% (1/109) 9.84 0.001088 0.003033
GO:0098798 mitochondrial protein-containing complex 2.75% (3/109) 3.92 0.00108 0.00304
GO:0006893 Golgi to plasma membrane transport 1.83% (2/109) 5.4 0.001073 0.00305
GO:0032991 protein-containing complex 11.93% (13/109) 1.37 0.001634 0.004512
GO:0080183 response to photooxidative stress 0.92% (1/109) 8.84 0.002174 0.005949
GO:0098876 vesicle-mediated transport to the plasma membrane 1.83% (2/109) 4.86 0.002233 0.006052
GO:0009976 tocopherol cyclase activity 0.92% (1/109) 8.62 0.002536 0.006811
GO:0006892 post-Golgi vesicle-mediated transport 1.83% (2/109) 4.62 0.00311 0.008274
GO:0019843 rRNA binding 1.83% (2/109) 4.47 0.003789 0.00999
GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes 0.92% (1/109) 7.97 0.003983 0.010132
GO:0016851 magnesium chelatase activity 0.92% (1/109) 7.97 0.003983 0.010132
GO:0051002 ligase activity, forming nitrogen-metal bonds 0.92% (1/109) 7.97 0.003983 0.010132
GO:0043231 intracellular membrane-bounded organelle 14.68% (16/109) 1.07 0.003916 0.01023
GO:0004751 ribose-5-phosphate isomerase activity 0.92% (1/109) 7.91 0.004164 0.0105
GO:0043227 membrane-bounded organelle 14.68% (16/109) 1.05 0.00421 0.010524
GO:0008909 isochorismate synthase activity 0.92% (1/109) 7.78 0.004525 0.01112
GO:0050486 intramolecular hydroxytransferase activity 0.92% (1/109) 7.78 0.004525 0.01112
GO:0080090 regulation of primary metabolic process 8.26% (9/109) 1.5 0.004788 0.011667
GO:0009536 plastid 3.67% (4/109) 2.56 0.004961 0.01199
GO:0003824 catalytic activity 28.44% (31/109) 0.65 0.005371 0.012873
GO:0005546 phosphatidylinositol-4,5-bisphosphate binding 1.83% (2/109) 4.18 0.005582 0.013268
GO:0010598 NAD(P)H dehydrogenase complex (plastoquinone) 0.92% (1/109) 7.38 0.005969 0.014072
GO:0022625 cytosolic large ribosomal subunit 1.83% (2/109) 4.09 0.00635 0.014851
GO:1902936 phosphatidylinositol bisphosphate binding 1.83% (2/109) 4.07 0.006521 0.015128
GO:0000145 exocyst 1.83% (2/109) 4.03 0.006888 0.015852
GO:0048564 photosystem I assembly 0.92% (1/109) 7.14 0.00705 0.016098
GO:0009657 plastid organization 1.83% (2/109) 3.95 0.007608 0.017103
GO:1901981 phosphatidylinositol phosphate binding 1.83% (2/109) 3.95 0.007587 0.01719
GO:0006887 exocytosis 1.83% (2/109) 3.92 0.007959 0.017755
GO:0009052 pentose-phosphate shunt, non-oxidative branch 0.92% (1/109) 6.84 0.00867 0.019193
GO:0009975 cyclase activity 0.92% (1/109) 6.6 0.010287 0.0226
GO:0032940 secretion by cell 1.83% (2/109) 3.68 0.010882 0.023727
GO:0046903 secretion 1.83% (2/109) 3.63 0.011688 0.024923
GO:0008236 serine-type peptidase activity 2.75% (3/109) 2.69 0.011609 0.024939
GO:0017171 serine hydrolase activity 2.75% (3/109) 2.69 0.011609 0.024939
GO:0055035 plastid thylakoid membrane 1.83% (2/109) 3.57 0.012622 0.026525
GO:0009535 chloroplast thylakoid membrane 1.83% (2/109) 3.57 0.012622 0.026525
GO:0035091 phosphatidylinositol binding 1.83% (2/109) 3.52 0.013376 0.027908
GO:0009773 photosynthetic electron transport in photosystem I 0.92% (1/109) 6.18 0.013693 0.028364
GO:0034357 photosynthetic membrane 1.83% (2/109) 3.45 0.014777 0.028955
GO:0042651 thylakoid membrane 1.83% (2/109) 3.45 0.014777 0.028955
GO:0008610 lipid biosynthetic process 3.67% (4/109) 2.12 0.014079 0.028956
GO:0070008 serine-type exopeptidase activity 1.83% (2/109) 3.43 0.015026 0.029244
GO:0042371 vitamin K biosynthetic process 0.92% (1/109) 6.07 0.014766 0.029329
GO:0042374 phylloquinone metabolic process 0.92% (1/109) 6.07 0.014766 0.029329
GO:0042372 phylloquinone biosynthetic process 0.92% (1/109) 6.07 0.014766 0.029329
GO:0042373 vitamin K metabolic process 0.92% (1/109) 6.07 0.014766 0.029329
GO:0019222 regulation of metabolic process 8.26% (9/109) 1.23 0.01536 0.029697
GO:0140352 export from cell 1.83% (2/109) 3.45 0.014722 0.030066
GO:0006775 fat-soluble vitamin metabolic process 0.92% (1/109) 5.95 0.016016 0.030358
GO:0042362 fat-soluble vitamin biosynthetic process 0.92% (1/109) 5.95 0.016016 0.030358
GO:0030247 polysaccharide binding 1.83% (2/109) 3.39 0.015952 0.030637
GO:0005773 vacuole 1.83% (2/109) 3.22 0.019958 0.037583
GO:0099023 vesicle tethering complex 1.83% (2/109) 3.17 0.021259 0.039775
GO:0004473 malate dehydrogenase (decarboxylating) (NADP+) activity 0.92% (1/109) 5.44 0.022777 0.042342
GO:0019682 glyceraldehyde-3-phosphate metabolic process 0.92% (1/109) 5.43 0.022954 0.0424
GO:0051668 localization within membrane 1.83% (2/109) 3.09 0.023325 0.042812
GO:0003676 nucleic acid binding 11.93% (13/109) 0.86 0.026901 0.048759
GO:0005543 phospholipid binding 1.83% (2/109) 2.99 0.026802 0.048884
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (109) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms