Coexpression cluster: Cluster_587 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0042651 thylakoid membrane 28.33% (51/180) 7.4 0.0 0.0
GO:0010287 plastoglobule 19.44% (35/180) 9.6 0.0 0.0
GO:0098588 bounding membrane of organelle 28.33% (51/180) 5.38 0.0 0.0
GO:0019867 outer membrane 28.33% (51/180) 6.71 0.0 0.0
GO:0031090 organelle membrane 28.33% (51/180) 4.8 0.0 0.0
GO:0031967 organelle envelope 17.78% (32/180) 6.62 0.0 0.0
GO:0031968 organelle outer membrane 28.33% (51/180) 6.78 0.0 0.0
GO:0031975 envelope 17.78% (32/180) 6.62 0.0 0.0
GO:0034357 photosynthetic membrane 28.33% (51/180) 7.4 0.0 0.0
GO:0042170 plastid membrane 28.33% (51/180) 6.9 0.0 0.0
GO:0009941 chloroplast envelope 17.78% (32/180) 6.98 0.0 0.0
GO:0009768 photosynthesis, light harvesting in photosystem I 28.33% (51/180) 9.45 0.0 0.0
GO:0006091 generation of precursor metabolites and energy 30.56% (55/180) 6.32 0.0 0.0
GO:0015979 photosynthesis 15.0% (27/180) 7.62 0.0 0.0
GO:0009521 photosystem 15.0% (27/180) 8.02 0.0 0.0
GO:0009314 response to radiation 29.44% (53/180) 7.53 0.0 0.0
GO:0009416 response to light stimulus 29.44% (53/180) 7.64 0.0 0.0
GO:0009526 plastid envelope 17.78% (32/180) 6.98 0.0 0.0
GO:0009535 chloroplast thylakoid membrane 28.33% (51/180) 7.52 0.0 0.0
GO:0009628 response to abiotic stimulus 32.22% (58/180) 6.71 0.0 0.0
GO:0009765 photosynthesis, light harvesting 28.33% (51/180) 9.45 0.0 0.0
GO:0055035 plastid thylakoid membrane 28.33% (51/180) 7.52 0.0 0.0
GO:0009522 photosystem I 10.0% (18/180) 8.96 0.0 0.0
GO:0044237 cellular metabolic process 52.22% (94/180) 2.15 0.0 0.0
GO:0016020 membrane 39.44% (71/180) 2.71 0.0 0.0
GO:0009987 cellular process 61.11% (110/180) 1.73 0.0 0.0
GO:0050896 response to stimulus 32.22% (58/180) 2.99 0.0 0.0
GO:0008152 metabolic process 56.67% (102/180) 1.82 0.0 0.0
GO:0009538 photosystem I reaction center 6.67% (12/180) 9.41 0.0 0.0
GO:0098796 membrane protein complex 16.11% (29/180) 4.53 0.0 0.0
GO:0005575 cellular_component 58.89% (106/180) 1.56 0.0 0.0
GO:0110165 cellular anatomical entity 54.44% (98/180) 1.62 0.0 0.0
GO:0008150 biological_process 66.11% (119/180) 1.25 0.0 0.0
GO:0009654 photosystem II oxygen evolving complex 5.56% (10/180) 7.62 0.0 0.0
GO:0009523 photosystem II 5.0% (9/180) 7.18 0.0 0.0
GO:0032781 positive regulation of ATP-dependent activity 3.33% (6/180) 8.34 0.0 0.0
GO:0001671 ATPase activator activity 3.33% (6/180) 8.2 0.0 0.0
GO:0019898 extrinsic component of membrane 4.44% (8/180) 6.43 0.0 0.0
GO:1990204 oxidoreductase complex 5.56% (10/180) 5.37 0.0 0.0
GO:0043462 regulation of ATP-dependent activity 3.33% (6/180) 7.55 0.0 0.0
GO:0032991 protein-containing complex 18.33% (33/180) 1.99 0.0 0.0
GO:0016851 magnesium chelatase activity 2.22% (4/180) 9.25 0.0 0.0
GO:0051002 ligase activity, forming nitrogen-metal bonds 2.22% (4/180) 9.25 0.0 0.0
GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes 2.22% (4/180) 9.25 0.0 0.0
GO:0060590 ATPase regulator activity 3.33% (6/180) 6.6 0.0 0.0
GO:0006457 protein folding 5.56% (10/180) 4.22 0.0 0.0
GO:0051087 protein-folding chaperone binding 3.33% (6/180) 5.26 0.0 0.0
GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity 2.22% (4/180) 7.25 0.0 0.0
GO:0005509 calcium ion binding 5.0% (9/180) 3.74 0.0 0.0
GO:0044093 positive regulation of molecular function 3.33% (6/180) 4.9 0.0 0.0
GO:0009507 chloroplast 5.56% (10/180) 3.2 0.0 1e-06
GO:0033014 tetrapyrrole biosynthetic process 2.78% (5/180) 5.3 0.0 1e-06
GO:0009536 plastid 5.56% (10/180) 3.16 0.0 2e-06
GO:0009767 photosynthetic electron transport chain 2.22% (4/180) 6.13 0.0 2e-06
GO:0033013 tetrapyrrole metabolic process 2.78% (5/180) 4.9 1e-06 5e-06
GO:1902074 response to salt 2.22% (4/180) 5.6 2e-06 1e-05
GO:0065009 regulation of molecular function 3.33% (6/180) 3.89 4e-06 2.3e-05
GO:0004655 porphobilinogen synthase activity 1.11% (2/180) 9.0 7e-06 3.9e-05
GO:0140677 molecular function activator activity 3.33% (6/180) 3.65 1e-05 5.6e-05
GO:0048471 perinuclear region of cytoplasm 1.67% (3/180) 6.21 1e-05 5.6e-05
GO:0005829 cytosol 6.67% (12/180) 2.23 1.2e-05 6.5e-05
GO:0008883 glutamyl-tRNA reductase activity 1.11% (2/180) 8.25 2.1e-05 0.000108
GO:0010242 oxygen evolving activity 1.11% (2/180) 8.12 2.5e-05 0.000127
GO:0009704 de-etiolation 1.11% (2/180) 7.95 3.1e-05 0.000156
GO:0090333 regulation of stomatal closure 1.11% (2/180) 7.95 3.1e-05 0.000156
GO:0009055 electron transfer activity 2.22% (4/180) 4.41 4.4e-05 0.000213
GO:0010035 response to inorganic substance 2.22% (4/180) 4.41 4.3e-05 0.000215
GO:0050821 protein stabilization 1.67% (3/180) 5.48 4.7e-05 0.000223
GO:0042549 photosystem II stabilization 1.11% (2/180) 7.66 4.7e-05 0.000224
GO:0022900 electron transport chain 2.22% (4/180) 4.31 5.6e-05 0.000261
GO:0031647 regulation of protein stability 1.67% (3/180) 5.33 6.4e-05 0.000292
GO:0006779 porphyrin-containing compound biosynthetic process 1.67% (3/180) 4.88 0.000159 0.000721
GO:0042548 regulation of photosynthesis, light reaction 1.11% (2/180) 6.66 0.000189 0.000821
GO:0043467 regulation of generation of precursor metabolites and energy 1.11% (2/180) 6.66 0.000189 0.000821
GO:0035196 miRNA processing 1.11% (2/180) 6.66 0.000189 0.000821
GO:1901700 response to oxygen-containing compound 2.22% (4/180) 3.82 0.000208 0.000892
GO:1902494 catalytic complex 6.11% (11/180) 1.9 0.000215 0.000911
GO:0010119 regulation of stomatal movement 1.11% (2/180) 6.54 0.000225 0.00094
GO:0010207 photosystem II assembly 1.11% (2/180) 6.5 0.000238 0.00098
GO:0071277 cellular response to calcium ion 1.11% (2/180) 6.42 0.000264 0.001024
GO:0051592 response to calcium ion 1.11% (2/180) 6.42 0.000264 0.001024
GO:0071248 cellular response to metal ion 1.11% (2/180) 6.42 0.000264 0.001024
GO:0034605 cellular response to heat 1.67% (3/180) 4.64 0.000262 0.001055
GO:0046148 pigment biosynthetic process 1.67% (3/180) 4.64 0.00026 0.00106
GO:0010109 regulation of photosynthesis 1.11% (2/180) 6.38 0.000278 0.001065
GO:0009414 response to water deprivation 1.11% (2/180) 6.21 0.000351 0.001331
GO:0009415 response to water 1.11% (2/180) 6.2 0.000359 0.001345
GO:0006778 porphyrin-containing compound metabolic process 1.67% (3/180) 4.34 0.000479 0.001717
GO:0046872 metal ion binding 8.33% (15/180) 1.45 0.000466 0.001728
GO:1902075 cellular response to salt 1.11% (2/180) 5.99 0.000477 0.001729
GO:0071241 cellular response to inorganic substance 1.11% (2/180) 5.99 0.000477 0.001729
GO:0042440 pigment metabolic process 1.67% (3/180) 4.3 0.000511 0.00181
GO:0006783 heme biosynthetic process 1.11% (2/180) 5.9 0.000543 0.001902
GO:0009408 response to heat 1.67% (3/180) 4.22 0.000603 0.002091
GO:0043169 cation binding 8.33% (15/180) 1.41 0.000612 0.002099
GO:0065007 biological regulation 12.22% (22/180) 1.1 0.000623 0.002115
GO:0050661 NADP binding 1.67% (3/180) 4.13 0.000724 0.002432
GO:0042168 heme metabolic process 1.11% (2/180) 5.65 0.000763 0.002539
GO:0003755 peptidyl-prolyl cis-trans isomerase activity 1.67% (3/180) 4.06 0.000838 0.00276
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor 1.67% (3/180) 4.01 0.000921 0.003001
GO:0009266 response to temperature stimulus 1.67% (3/180) 3.93 0.001077 0.003442
GO:0098772 molecular function regulator activity 3.33% (6/180) 2.4 0.001075 0.003469
GO:0016859 cis-trans isomerase activity 1.67% (3/180) 3.79 0.001421 0.004497
GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors 1.67% (3/180) 3.75 0.001523 0.004775
GO:0001101 response to acid chemical 1.11% (2/180) 5.11 0.001608 0.004993
GO:1901701 cellular response to oxygen-containing compound 1.11% (2/180) 5.01 0.001827 0.005619
GO:0005372 water transmembrane transporter activity 1.11% (2/180) 4.88 0.002189 0.006548
GO:0015250 water channel activity 1.11% (2/180) 4.88 0.002189 0.006548
GO:0140662 ATP-dependent protein folding chaperone 1.67% (3/180) 3.57 0.002179 0.006639
GO:0051082 unfolded protein binding 1.67% (3/180) 3.48 0.002604 0.007716
GO:0044183 protein folding chaperone 1.67% (3/180) 3.36 0.003269 0.009602
GO:0010038 response to metal ion 1.11% (2/180) 4.52 0.003557 0.010352
GO:0030093 chloroplast photosystem I 0.56% (1/180) 7.62 0.00508 0.014656
GO:0010033 response to organic substance 2.22% (4/180) 2.55 0.005195 0.014857
GO:0004674 protein serine/threonine kinase activity 3.89% (7/180) 1.65 0.007569 0.021456
GO:0070887 cellular response to chemical stimulus 1.11% (2/180) 3.7 0.01056 0.029677
GO:0042221 response to chemical 2.22% (4/180) 2.18 0.012278 0.034211
GO:0016491 oxidoreductase activity 6.11% (11/180) 1.13 0.012951 0.035781
GO:0071949 FAD binding 1.11% (2/180) 3.52 0.01355 0.037121
GO:0098807 chloroplast thylakoid membrane protein complex 0.56% (1/180) 6.15 0.013982 0.037985
GO:0007165 signal transduction 3.89% (7/180) 1.44 0.015558 0.041574
GO:0070918 regulatory ncRNA processing 1.11% (2/180) 3.41 0.015537 0.041861
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (180) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms