Coexpression cluster: Cluster_723 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0047635 alanine-oxo-acid transaminase activity 4.64% (7/151) 8.62 0.0 0.0
GO:0004021 L-alanine:2-oxoglutarate aminotransferase activity 4.64% (7/151) 8.62 0.0 0.0
GO:0008422 beta-glucosidase activity 7.28% (11/151) 5.63 0.0 0.0
GO:0015926 glucosidase activity 7.28% (11/151) 5.36 0.0 0.0
GO:0016769 transferase activity, transferring nitrogenous groups 4.64% (7/151) 5.55 0.0 0.0
GO:0008483 transaminase activity 4.64% (7/151) 5.55 0.0 0.0
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds 8.61% (13/151) 3.5 0.0 0.0
GO:0016798 hydrolase activity, acting on glycosyl bonds 8.61% (13/151) 3.29 0.0 0.0
GO:0070279 vitamin B6 binding 3.97% (6/151) 4.83 0.0 4e-06
GO:0030170 pyridoxal phosphate binding 3.97% (6/151) 4.83 0.0 4e-06
GO:0019842 vitamin binding 3.97% (6/151) 4.51 0.0 1.3e-05
GO:0005975 carbohydrate metabolic process 8.61% (13/151) 2.53 1e-06 1.9e-05
GO:0000439 transcription factor TFIIH core complex 1.99% (3/151) 7.07 2e-06 5.6e-05
GO:0005675 transcription factor TFIIH holo complex 1.99% (3/151) 6.55 5e-06 0.000152
GO:0006360 transcription by RNA polymerase I 1.99% (3/151) 6.36 8e-06 0.000211
GO:1901259 chloroplast rRNA processing 1.99% (3/151) 6.2 1.1e-05 0.000276
GO:0032806 carboxy-terminal domain protein kinase complex 1.99% (3/151) 5.66 3.2e-05 0.000796
GO:0006366 transcription by RNA polymerase II 1.99% (3/151) 5.58 3.8e-05 0.000882
GO:0070816 obsolete phosphorylation of RNA polymerase II C-terminal domain 1.99% (3/151) 5.53 4.2e-05 0.000939
GO:0035627 ceramide transport 1.32% (2/151) 7.37 7e-05 0.001092
GO:1902388 ceramide 1-phosphate transfer activity 1.32% (2/151) 7.37 7e-05 0.001092
GO:0046624 sphingolipid transporter activity 1.32% (2/151) 7.37 7e-05 0.001092
GO:0046625 sphingolipid binding 1.32% (2/151) 7.37 7e-05 0.001092
GO:0097001 ceramide binding 1.32% (2/151) 7.37 7e-05 0.001092
GO:1902387 ceramide 1-phosphate binding 1.32% (2/151) 7.37 7e-05 0.001092
GO:0120016 sphingolipid transfer activity 1.32% (2/151) 7.37 7e-05 0.001092
GO:0120017 ceramide transfer activity 1.32% (2/151) 7.37 7e-05 0.001092
GO:0015179 L-amino acid transmembrane transporter activity 1.99% (3/151) 5.24 7.7e-05 0.001158
GO:0120009 intermembrane lipid transfer 1.32% (2/151) 7.2 8.9e-05 0.001246
GO:0098588 bounding membrane of organelle 4.64% (7/151) 2.77 8.7e-05 0.001264
GO:0009535 chloroplast thylakoid membrane 2.65% (4/151) 4.1 9.9e-05 0.0013
GO:0055035 plastid thylakoid membrane 2.65% (4/151) 4.1 9.9e-05 0.0013
GO:0034357 photosynthetic membrane 2.65% (4/151) 3.98 0.000136 0.001682
GO:0042651 thylakoid membrane 2.65% (4/151) 3.98 0.000136 0.001682
GO:0006289 nucleotide-excision repair 1.99% (3/151) 4.73 0.000215 0.002576
GO:0120014 phospholipid transfer activity 1.32% (2/151) 6.06 0.000432 0.005039
GO:0120013 lipid transfer activity 1.32% (2/151) 5.99 0.000476 0.005407
GO:0042170 plastid membrane 2.65% (4/151) 3.48 0.000493 0.005449
GO:0031968 organelle outer membrane 2.65% (4/151) 3.37 0.000669 0.007209
GO:0008152 metabolic process 26.49% (40/151) 0.72 0.000727 0.007448
GO:0005774 vacuolar membrane 1.99% (3/151) 4.13 0.000716 0.007522
GO:0019867 outer membrane 2.65% (4/151) 3.3 0.000801 0.007828
GO:0032543 mitochondrial translation 1.32% (2/151) 5.59 0.000826 0.007886
GO:0009058 biosynthetic process 9.27% (14/151) 1.43 0.000798 0.007978
GO:0031090 organelle membrane 4.64% (7/151) 2.19 0.00098 0.00895
GO:0005548 phospholipid transporter activity 1.32% (2/151) 5.47 0.00097 0.009058
GO:0003333 amino acid transmembrane transport 1.99% (3/151) 3.95 0.001035 0.00925
GO:1902554 serine/threonine protein kinase complex 1.99% (3/151) 3.91 0.001122 0.009814
GO:1902911 protein kinase complex 1.99% (3/151) 3.88 0.001191 0.010008
GO:0090575 RNA polymerase II transcription regulator complex 1.99% (3/151) 3.88 0.001179 0.010105
GO:0031071 cysteine desulfurase activity 0.66% (1/151) 9.37 0.001507 0.012408
GO:0006351 DNA-templated transcription 2.65% (4/151) 3.04 0.001547 0.012493
GO:1905039 carboxylic acid transmembrane transport 1.99% (3/151) 3.71 0.001669 0.012741
GO:1903825 organic acid transmembrane transport 1.99% (3/151) 3.71 0.001669 0.012741
GO:0016787 hydrolase activity 11.92% (18/151) 1.12 0.001654 0.013107
GO:0042886 amide transport 1.32% (2/151) 4.91 0.002085 0.01564
GO:0015171 amino acid transmembrane transporter activity 1.99% (3/151) 3.47 0.002644 0.019483
GO:0006865 amino acid transport 1.99% (3/151) 3.45 0.002742 0.019855
GO:0005874 microtubule 1.99% (3/151) 3.42 0.002951 0.021008
GO:1905156 negative regulation of photosynthesis 0.66% (1/151) 8.15 0.003512 0.022694
GO:0080153 negative regulation of reductive pentose-phosphate cycle 0.66% (1/151) 8.15 0.003512 0.022694
GO:0080152 regulation of reductive pentose-phosphate cycle 0.66% (1/151) 8.15 0.003512 0.022694
GO:0010110 regulation of photosynthesis, dark reaction 0.66% (1/151) 8.15 0.003512 0.022694
GO:0005342 organic acid transmembrane transporter activity 1.99% (3/151) 3.36 0.003311 0.022795
GO:0046943 carboxylic acid transmembrane transporter activity 1.99% (3/151) 3.36 0.003311 0.022795
GO:0099512 supramolecular fiber 1.99% (3/151) 3.29 0.003781 0.023355
GO:0099081 supramolecular polymer 1.99% (3/151) 3.29 0.003781 0.023355
GO:0099513 polymeric cytoskeletal fiber 1.99% (3/151) 3.29 0.003756 0.023899
GO:0046942 carboxylic acid transport 1.99% (3/151) 3.13 0.005083 0.030499
GO:0015849 organic acid transport 1.99% (3/151) 3.13 0.005083 0.030499
GO:0045912 negative regulation of carbohydrate metabolic process 0.66% (1/151) 7.5 0.005514 0.031722
GO:0032774 RNA biosynthetic process 2.65% (4/151) 2.52 0.005465 0.031878
GO:0008514 organic anion transmembrane transporter activity 1.99% (3/151) 3.1 0.005451 0.032245
GO:0110104 mRNA alternative polyadenylation 0.66% (1/151) 7.37 0.006013 0.03413
GO:0080044 quercetin 7-O-glucosyltransferase activity 1.32% (2/151) 4.08 0.0064 0.034912
GO:0080043 quercetin 3-O-glucosyltransferase activity 1.32% (2/151) 4.08 0.0064 0.034912
GO:0005854 nascent polypeptide-associated complex 0.66% (1/151) 7.31 0.006263 0.035074
GO:0015711 organic anion transport 1.99% (3/151) 2.98 0.006758 0.03639
GO:0006782 protoporphyrinogen IX biosynthetic process 0.66% (1/151) 7.15 0.007012 0.036813
GO:0046501 protoporphyrinogen IX metabolic process 0.66% (1/151) 7.15 0.007012 0.036813
GO:0007584 response to nutrient 0.66% (1/151) 7.1 0.007262 0.037653
GO:0015935 small ribosomal subunit 1.32% (2/151) 3.93 0.007887 0.040399
GO:0008150 biological_process 37.09% (56/151) 0.41 0.008304 0.041521
GO:0010598 NAD(P)H dehydrogenase complex (plastoquinone) 0.66% (1/151) 6.91 0.008259 0.041793
GO:0005667 transcription regulator complex 1.99% (3/151) 2.86 0.008486 0.041929
GO:0044271 cellular nitrogen compound biosynthetic process 4.64% (7/151) 1.61 0.008702 0.042496
GO:0016020 membrane 11.26% (17/151) 0.9 0.00971 0.046875
GO:0071218 cellular response to misfolded protein 0.66% (1/151) 6.6 0.010251 0.048376
GO:0051788 response to misfolded protein 0.66% (1/151) 6.6 0.010251 0.048376
GO:0003729 mRNA binding 2.65% (4/151) 2.23 0.010858 0.049036
GO:0004109 coproporphyrinogen oxidase activity 0.66% (1/151) 6.53 0.010748 0.049069
GO:0035967 cellular response to topologically incorrect protein 0.66% (1/151) 6.53 0.010748 0.049069
GO:0035966 response to topologically incorrect protein 0.66% (1/151) 6.53 0.010748 0.049069
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (151) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms