Coexpression cluster: Cluster_4907 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0042646 plastid nucleoid 33.33% (1/3) 11.5 0.000344 0.003315
GO:0042644 chloroplast nucleoid 33.33% (1/3) 11.5 0.000344 0.003315
GO:0043228 non-membrane-bounded organelle 66.67% (2/3) 5.74 0.000464 0.003576
GO:0009295 nucleoid 33.33% (1/3) 10.8 0.000559 0.003913
GO:0005763 mitochondrial small ribosomal subunit 33.33% (1/3) 11.66 0.000309 0.003972
GO:0000314 organellar small ribosomal subunit 33.33% (1/3) 11.66 0.000309 0.003972
GO:0043232 intracellular non-membrane-bounded organelle 66.67% (2/3) 5.74 0.000464 0.003973
GO:0000703 oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity 33.33% (1/3) 14.03 6e-05 0.004613
GO:0000702 oxidized base lesion DNA N-glycosylase activity 33.33% (1/3) 11.75 0.00029 0.005573
GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity 33.33% (1/3) 10.05 0.000943 0.006052
GO:0006285 base-excision repair, AP site formation 33.33% (1/3) 11.94 0.000255 0.006534
GO:0006296 obsolete nucleotide-excision repair, DNA incision, 5'-to lesion 33.33% (1/3) 12.4 0.000185 0.007111
GO:0019104 DNA N-glycosylase activity 33.33% (1/3) 9.51 0.001367 0.008098
GO:0051539 4 iron, 4 sulfur cluster binding 33.33% (1/3) 9.15 0.001756 0.009015
GO:0006284 base-excision repair 33.33% (1/3) 9.18 0.001726 0.009495
GO:0015935 small ribosomal subunit 33.33% (1/3) 8.58 0.002614 0.012578
GO:0051536 iron-sulfur cluster binding 33.33% (1/3) 7.96 0.004003 0.016224
GO:0051540 metal cluster binding 33.33% (1/3) 7.96 0.004003 0.016224
GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds 33.33% (1/3) 8.11 0.00361 0.016351
GO:0098798 mitochondrial protein-containing complex 33.33% (1/3) 7.52 0.005427 0.020893
GO:0044391 ribosomal subunit 33.33% (1/3) 7.25 0.00655 0.024018
GO:0005840 ribosome 33.33% (1/3) 7.07 0.00742 0.02597
GO:0034641 cellular nitrogen compound metabolic process 66.67% (2/3) 3.64 0.008265 0.027669
GO:0003735 structural constituent of ribosome 33.33% (1/3) 6.84 0.008676 0.027837
GO:0006412 translation 33.33% (1/3) 6.67 0.009812 0.030222
GO:0043043 peptide biosynthetic process 33.33% (1/3) 6.54 0.010695 0.031674
GO:0006518 peptide metabolic process 33.33% (1/3) 6.29 0.01276 0.036391
GO:0005198 structural molecule activity 33.33% (1/3) 6.13 0.014259 0.037861
GO:0043604 amide biosynthetic process 33.33% (1/3) 6.15 0.014022 0.038561
GO:0043226 organelle 66.67% (2/3) 3.03 0.018868 0.045402
GO:0043229 intracellular organelle 66.67% (2/3) 3.03 0.018865 0.046858
GO:0043603 amide metabolic process 33.33% (1/3) 5.73 0.018752 0.048131
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (3) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms