Coexpression cluster: Cluster_4712 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific 60.0% (3/5) 7.87 0.0 2e-06
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding 60.0% (3/5) 7.78 0.0 2e-06
GO:0140110 transcription regulator activity 80.0% (4/5) 5.64 0.0 2e-06
GO:1902680 positive regulation of RNA biosynthetic process 60.0% (3/5) 7.58 0.0 2e-06
GO:0045893 positive regulation of DNA-templated transcription 60.0% (3/5) 7.58 0.0 2e-06
GO:0003700 DNA-binding transcription factor activity 80.0% (4/5) 5.9 0.0 2e-06
GO:0000987 cis-regulatory region sequence-specific DNA binding 60.0% (3/5) 8.01 0.0 2e-06
GO:0009891 positive regulation of biosynthetic process 60.0% (3/5) 7.29 1e-06 2e-06
GO:0031328 positive regulation of cellular biosynthetic process 60.0% (3/5) 7.29 1e-06 2e-06
GO:0010557 positive regulation of macromolecule biosynthetic process 60.0% (3/5) 7.29 1e-06 2e-06
GO:0045935 positive regulation of nucleobase-containing compound metabolic process 60.0% (3/5) 7.25 1e-06 2e-06
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding 60.0% (3/5) 8.1 0.0 3e-06
GO:0051254 positive regulation of RNA metabolic process 60.0% (3/5) 7.33 1e-06 3e-06
GO:0000976 transcription cis-regulatory region binding 60.0% (3/5) 7.04 1e-06 3e-06
GO:0001067 transcription regulatory region nucleic acid binding 60.0% (3/5) 7.04 1e-06 3e-06
GO:0045944 positive regulation of transcription by RNA polymerase II 60.0% (3/5) 8.36 0.0 3e-06
GO:1990837 sequence-specific double-stranded DNA binding 60.0% (3/5) 6.93 1e-06 4e-06
GO:0031325 positive regulation of cellular metabolic process 60.0% (3/5) 6.98 1e-06 4e-06
GO:0046983 protein dimerization activity 60.0% (3/5) 6.93 1e-06 4e-06
GO:0009893 positive regulation of metabolic process 60.0% (3/5) 6.76 2e-06 4e-06
GO:0051252 regulation of RNA metabolic process 80.0% (4/5) 5.03 2e-06 4e-06
GO:0006355 regulation of DNA-templated transcription 80.0% (4/5) 5.1 1e-06 4e-06
GO:2001141 regulation of RNA biosynthetic process 80.0% (4/5) 5.1 1e-06 4e-06
GO:0048522 positive regulation of cellular process 60.0% (3/5) 6.8 2e-06 4e-06
GO:0010604 positive regulation of macromolecule metabolic process 60.0% (3/5) 6.76 2e-06 4e-06
GO:0051173 positive regulation of nitrogen compound metabolic process 60.0% (3/5) 6.78 2e-06 4e-06
GO:0019219 regulation of nucleobase-containing compound metabolic process 80.0% (4/5) 4.97 2e-06 4e-06
GO:0048518 positive regulation of biological process 60.0% (3/5) 6.54 3e-06 5e-06
GO:0006357 regulation of transcription by RNA polymerase II 60.0% (3/5) 6.5 3e-06 6e-06
GO:0051171 regulation of nitrogen compound metabolic process 80.0% (4/5) 4.79 3e-06 7e-06
GO:0080090 regulation of primary metabolic process 80.0% (4/5) 4.78 4e-06 7e-06
GO:0003690 double-stranded DNA binding 60.0% (3/5) 6.35 4e-06 7e-06
GO:0010556 regulation of macromolecule biosynthetic process 80.0% (4/5) 4.69 5e-06 8e-06
GO:0010468 regulation of gene expression 80.0% (4/5) 4.7 4e-06 8e-06
GO:0009889 regulation of biosynthetic process 80.0% (4/5) 4.66 5e-06 8e-06
GO:0031326 regulation of cellular biosynthetic process 80.0% (4/5) 4.66 5e-06 8e-06
GO:0031323 regulation of cellular metabolic process 80.0% (4/5) 4.55 7e-06 1e-05
GO:0060255 regulation of macromolecule metabolic process 80.0% (4/5) 4.56 7e-06 1e-05
GO:0019222 regulation of metabolic process 80.0% (4/5) 4.5 8e-06 1.1e-05
GO:0043565 sequence-specific DNA binding 60.0% (3/5) 5.89 1e-05 1.4e-05
GO:0050794 regulation of cellular process 80.0% (4/5) 3.99 3.1e-05 4.3e-05
GO:0050789 regulation of biological process 80.0% (4/5) 3.92 3.8e-05 5.1e-05
GO:0065007 biological regulation 80.0% (4/5) 3.81 5e-05 6.6e-05
GO:0003677 DNA binding 60.0% (3/5) 4.35 0.000244 0.000317
GO:0005634 nucleus 60.0% (3/5) 4.02 0.000478 0.000605
GO:0003676 nucleic acid binding 60.0% (3/5) 3.19 0.002568 0.003182
GO:0043231 intracellular membrane-bounded organelle 60.0% (3/5) 3.1 0.003097 0.003756
GO:0043227 membrane-bounded organelle 60.0% (3/5) 3.09 0.003165 0.003759
GO:0005515 protein binding 60.0% (3/5) 3.0 0.003744 0.004355
GO:0043226 organelle 60.0% (3/5) 2.88 0.004782 0.005345
GO:0043229 intracellular organelle 60.0% (3/5) 2.88 0.004781 0.00545
GO:0097159 organic cyclic compound binding 60.0% (3/5) 2.06 0.023584 0.025363
GO:0008150 biological_process 80.0% (4/5) 1.52 0.023275 0.025513
GO:0110165 cellular anatomical entity 60.0% (3/5) 1.76 0.041597 0.043908
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (5) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms