Coexpression cluster: Cluster_715 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0017057 6-phosphogluconolactonase activity 4.05% (3/74) 10.77 0.0 0.0
GO:0019375 galactolipid biosynthetic process 4.05% (3/74) 8.34 0.0 5e-06
GO:0046481 digalactosyldiacylglycerol synthase activity 4.05% (3/74) 8.34 0.0 5e-06
GO:0019374 galactolipid metabolic process 4.05% (3/74) 8.34 0.0 5e-06
GO:0035250 UDP-galactosyltransferase activity 4.05% (3/74) 8.34 0.0 5e-06
GO:0042797 tRNA transcription by RNA polymerase III 4.05% (3/74) 8.48 0.0 6e-06
GO:0009304 tRNA transcription 4.05% (3/74) 8.48 0.0 6e-06
GO:0009527 plastid outer membrane 5.41% (4/74) 6.7 0.0 1e-05
GO:0009707 chloroplast outer membrane 5.41% (4/74) 6.7 0.0 1e-05
GO:0006098 pentose-phosphate shunt 4.05% (3/74) 7.82 0.0 1.3e-05
GO:0031969 chloroplast membrane 5.41% (4/74) 5.98 1e-06 1.9e-05
GO:0006740 NADPH regeneration 4.05% (3/74) 7.12 2e-06 4.6e-05
GO:0051084 'de novo' post-translational protein folding 4.05% (3/74) 6.91 2e-06 6.2e-05
GO:0051085 chaperone cofactor-dependent protein refolding 4.05% (3/74) 6.91 2e-06 6.2e-05
GO:0098781 ncRNA transcription 4.05% (3/74) 6.82 3e-06 6.9e-05
GO:0048024 regulation of mRNA splicing, via spliceosome 4.05% (3/74) 6.78 3e-06 7e-05
GO:1901135 carbohydrate derivative metabolic process 9.46% (7/74) 3.43 4e-06 8.9e-05
GO:0008378 galactosyltransferase activity 4.05% (3/74) 6.6 5e-06 9.1e-05
GO:0006739 NADP metabolic process 4.05% (3/74) 6.47 6e-06 9.6e-05
GO:0009507 chloroplast 8.11% (6/74) 3.74 6e-06 9.9e-05
GO:0005666 RNA polymerase III complex 4.05% (3/74) 6.48 6e-06 9.9e-05
GO:0006458 'de novo' protein folding 4.05% (3/74) 6.49 6e-06 0.000102
GO:0050684 regulation of mRNA processing 4.05% (3/74) 6.51 6e-06 0.000104
GO:0009536 plastid 8.11% (6/74) 3.7 7e-06 0.000106
GO:0051156 glucose 6-phosphate metabolic process 4.05% (3/74) 6.38 7e-06 0.000108
GO:0043484 regulation of RNA splicing 4.05% (3/74) 6.32 8e-06 0.000111
GO:0006383 transcription by RNA polymerase III 4.05% (3/74) 6.26 9e-06 0.000121
GO:0061077 chaperone-mediated protein folding 4.05% (3/74) 6.11 1.3e-05 0.000159
GO:0071818 BAT3 complex 2.7% (2/74) 8.46 1.5e-05 0.000189
GO:0005759 mitochondrial matrix 4.05% (3/74) 5.99 1.6e-05 0.000193
GO:0072379 ER membrane insertion complex 2.7% (2/74) 8.08 2.6e-05 0.000303
GO:0000244 spliceosomal tri-snRNP complex assembly 2.7% (2/74) 7.94 3.2e-05 0.000344
GO:0019362 pyridine nucleotide metabolic process 5.41% (4/74) 4.49 3.4e-05 0.000344
GO:0046496 nicotinamide nucleotide metabolic process 5.41% (4/74) 4.49 3.3e-05 0.000349
GO:0042170 plastid membrane 5.41% (4/74) 4.51 3.1e-05 0.00035
GO:0072524 pyridine-containing compound metabolic process 5.41% (4/74) 4.42 4.1e-05 0.000353
GO:0070013 intracellular organelle lumen 4.05% (3/74) 5.56 3.9e-05 0.000358
GO:0031974 membrane-enclosed lumen 4.05% (3/74) 5.56 3.9e-05 0.000358
GO:0043233 organelle lumen 4.05% (3/74) 5.56 3.9e-05 0.000358
GO:0051087 protein-folding chaperone binding 4.05% (3/74) 5.54 4e-05 0.000359
GO:0031968 organelle outer membrane 5.41% (4/74) 4.39 4.3e-05 0.000367
GO:0051787 misfolded protein binding 2.7% (2/74) 7.82 3.8e-05 0.000376
GO:1903311 regulation of mRNA metabolic process 4.05% (3/74) 5.46 4.8e-05 0.0004
GO:0019867 outer membrane 5.41% (4/74) 4.32 5.2e-05 0.000423
GO:0003729 mRNA binding 6.76% (5/74) 3.59 6.6e-05 0.00052
GO:0006664 glycolipid metabolic process 4.05% (3/74) 5.12 9.6e-05 0.000714
GO:1903509 liposaccharide metabolic process 4.05% (3/74) 5.12 9.6e-05 0.000714
GO:0009247 glycolipid biosynthetic process 4.05% (3/74) 5.13 9.4e-05 0.000727
GO:0055029 nuclear DNA-directed RNA polymerase complex 4.05% (3/74) 5.06 0.000109 0.000788
GO:0000428 DNA-directed RNA polymerase complex 4.05% (3/74) 4.85 0.000167 0.001191
GO:0051082 unfolded protein binding 4.05% (3/74) 4.76 0.000199 0.001359
GO:0006091 generation of precursor metabolites and energy 5.41% (4/74) 3.82 0.000198 0.001384
GO:1901668 regulation of superoxide dismutase activity 1.35% (1/74) 11.99 0.000246 0.001538
GO:0051341 regulation of oxidoreductase activity 1.35% (1/74) 11.99 0.000246 0.001538
GO:0051353 positive regulation of oxidoreductase activity 1.35% (1/74) 11.99 0.000246 0.001538
GO:1901671 positive regulation of superoxide dismutase activity 1.35% (1/74) 11.99 0.000246 0.001538
GO:0044183 protein folding chaperone 4.05% (3/74) 4.65 0.000252 0.001545
GO:0000387 spliceosomal snRNP assembly 2.7% (2/74) 6.5 0.000235 0.001578
GO:0030880 RNA polymerase complex 4.05% (3/74) 4.58 0.000287 0.001733
GO:0003676 nucleic acid binding 18.92% (14/74) 1.53 0.000298 0.001771
GO:0031593 polyubiquitin modification-dependent protein binding 2.7% (2/74) 6.24 0.000338 0.001975
GO:0046467 membrane lipid biosynthetic process 4.05% (3/74) 4.48 0.00035 0.002012
GO:0006643 membrane lipid metabolic process 4.05% (3/74) 4.37 0.000442 0.002499
GO:0140030 modification-dependent protein binding 2.7% (2/74) 5.96 0.000497 0.002766
GO:0006163 purine nucleotide metabolic process 5.41% (4/74) 3.46 0.000505 0.002768
GO:0043231 intracellular membrane-bounded organelle 18.92% (14/74) 1.43 0.000572 0.003085
GO:0043227 membrane-bounded organelle 18.92% (14/74) 1.42 0.000616 0.003273
GO:0072521 purine-containing compound metabolic process 5.41% (4/74) 3.37 0.000637 0.003334
GO:0052689 carboxylic ester hydrolase activity 4.05% (3/74) 3.99 0.000944 0.004869
GO:0009117 nucleotide metabolic process 5.41% (4/74) 3.21 0.000962 0.004891
GO:0006753 nucleoside phosphate metabolic process 5.41% (4/74) 3.2 0.000999 0.005007
GO:0006457 protein folding 4.05% (3/74) 3.77 0.001452 0.007177
GO:0008194 UDP-glycosyltransferase activity 5.41% (4/74) 3.01 0.001603 0.007817
GO:0005575 cellular_component 35.14% (26/74) 0.81 0.001717 0.008041
GO:0098588 bounding membrane of organelle 5.41% (4/74) 2.99 0.001675 0.008057
GO:0055086 nucleobase-containing small molecule metabolic process 5.41% (4/74) 2.99 0.001706 0.008099
GO:0006351 DNA-templated transcription 4.05% (3/74) 3.65 0.001836 0.008487
GO:0030433 ubiquitin-dependent ERAD pathway 2.7% (2/74) 4.94 0.002003 0.009143
GO:0043226 organelle 18.92% (14/74) 1.21 0.002421 0.010774
GO:0043229 intracellular organelle 18.92% (14/74) 1.21 0.002419 0.010901
GO:0016758 hexosyltransferase activity 5.41% (4/74) 2.79 0.002744 0.011768
GO:0061695 transferase complex, transferring phosphorus-containing groups 4.05% (3/74) 3.45 0.002715 0.011787
GO:0043085 positive regulation of catalytic activity 2.7% (2/74) 4.7 0.002784 0.011801
GO:0036503 ERAD pathway 2.7% (2/74) 4.72 0.002698 0.011859
GO:0010033 response to organic substance 4.05% (3/74) 3.41 0.002911 0.012191
GO:0044093 positive regulation of molecular function 2.7% (2/74) 4.6 0.003197 0.013236
GO:0033331 ent-kaurene metabolic process 1.35% (1/74) 8.23 0.00332 0.013278
GO:0010241 ent-kaurene oxidation to kaurenoic acid 1.35% (1/74) 8.23 0.00332 0.013278
GO:0052615 ent-kaurene oxidase activity 1.35% (1/74) 8.23 0.00332 0.013278
GO:0008610 lipid biosynthetic process 5.41% (4/74) 2.68 0.003669 0.014353
GO:0010243 response to organonitrogen compound 2.7% (2/74) 4.5 0.003647 0.014426
GO:1901698 response to nitrogen compound 2.7% (2/74) 4.3 0.004762 0.018428
GO:1901137 carbohydrate derivative biosynthetic process 4.05% (3/74) 3.15 0.004863 0.018614
GO:0032774 RNA biosynthetic process 4.05% (3/74) 3.14 0.004956 0.01877
GO:0005975 carbohydrate metabolic process 6.76% (5/74) 2.18 0.005119 0.019184
GO:0042221 response to chemical 4.05% (3/74) 3.05 0.005862 0.021737
GO:0006399 tRNA metabolic process 4.05% (3/74) 3.01 0.006309 0.023155
GO:0034976 response to endoplasmic reticulum stress 2.7% (2/74) 4.07 0.006458 0.023459
GO:0044249 cellular biosynthetic process 9.46% (7/74) 1.65 0.006962 0.025036
GO:0031090 organelle membrane 5.41% (4/74) 2.41 0.007038 0.025056
GO:0097159 organic cyclic compound binding 25.68% (19/74) 0.84 0.007323 0.025812
GO:0046872 metal ion binding 9.46% (7/74) 1.63 0.007496 0.026161
GO:0065003 protein-containing complex assembly 4.05% (3/74) 2.91 0.0077 0.026615
GO:0043169 cation binding 9.46% (7/74) 1.59 0.008605 0.029457
GO:0022618 protein-RNA complex assembly 2.7% (2/74) 3.79 0.009338 0.031662
GO:0071826 protein-RNA complex organization 2.7% (2/74) 3.75 0.009893 0.033227
GO:0019637 organophosphate metabolic process 5.41% (4/74) 2.25 0.01022 0.034004
GO:1901576 organic substance biosynthetic process 9.46% (7/74) 1.53 0.010751 0.035113
GO:0071586 CAAX-box protein processing 1.35% (1/74) 6.54 0.010658 0.035131
GO:0009749 response to glucose 1.35% (1/74) 6.4 0.011754 0.036385
GO:0034284 response to monosaccharide 1.35% (1/74) 6.4 0.011754 0.036385
GO:0009746 response to hexose 1.35% (1/74) 6.4 0.011754 0.036385
GO:0047334 diphosphate-fructose-6-phosphate 1-phosphotransferase activity 1.35% (1/74) 6.4 0.011754 0.036385
GO:0009743 response to carbohydrate 1.35% (1/74) 6.4 0.011754 0.036385
GO:0050790 regulation of catalytic activity 2.7% (2/74) 3.65 0.011344 0.036712
GO:0016757 glycosyltransferase activity 5.41% (4/74) 2.18 0.011966 0.036723
GO:0065009 regulation of molecular function 2.7% (2/74) 3.59 0.01229 0.037396
GO:0009058 biosynthetic process 9.46% (7/74) 1.45 0.013968 0.042141
GO:0044255 cellular lipid metabolic process 5.41% (4/74) 2.09 0.014753 0.044134
GO:0110165 cellular anatomical entity 28.38% (21/74) 0.68 0.015498 0.045597
GO:0009686 gibberellin biosynthetic process 1.35% (1/74) 6.01 0.015399 0.045683
GO:0007389 pattern specification process 1.35% (1/74) 5.95 0.016005 0.046703
GO:0090630 activation of GTPase activity 1.35% (1/74) 5.89 0.016732 0.048037
GO:0016157 sucrose synthase activity 1.35% (1/74) 5.89 0.016732 0.048037
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (74) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms