Coexpression cluster: Cluster_500 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0034397 telomere localization 4.71% (4/85) 8.72 0.0 0.0
GO:0050000 chromosome localization 4.71% (4/85) 8.72 0.0 0.0
GO:0034398 telomere tethering at nuclear periphery 4.71% (4/85) 8.72 0.0 0.0
GO:0140110 transcription regulator activity 15.29% (13/85) 3.26 0.0 0.0
GO:0044614 nuclear pore cytoplasmic filaments 4.71% (4/85) 8.28 0.0 0.0
GO:0000973 post-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery 4.71% (4/85) 8.06 0.0 0.0
GO:0006355 regulation of DNA-templated transcription 16.47% (14/85) 2.82 0.0 0.0
GO:2001141 regulation of RNA biosynthetic process 16.47% (14/85) 2.82 0.0 0.0
GO:0000972 transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery 4.71% (4/85) 7.45 0.0 0.0
GO:0003700 DNA-binding transcription factor activity 12.94% (11/85) 3.27 0.0 0.0
GO:0051252 regulation of RNA metabolic process 16.47% (14/85) 2.75 0.0 1e-06
GO:0019219 regulation of nucleobase-containing compound metabolic process 16.47% (14/85) 2.69 0.0 1e-06
GO:0008139 nuclear localization sequence binding 4.71% (4/85) 6.75 0.0 1e-06
GO:0097159 organic cyclic compound binding 37.65% (32/85) 1.39 0.0 2e-06
GO:0051171 regulation of nitrogen compound metabolic process 16.47% (14/85) 2.51 0.0 3e-06
GO:0080090 regulation of primary metabolic process 16.47% (14/85) 2.5 0.0 3e-06
GO:0010468 regulation of gene expression 16.47% (14/85) 2.42 0.0 5e-06
GO:0010556 regulation of macromolecule biosynthetic process 16.47% (14/85) 2.41 0.0 5e-06
GO:0009889 regulation of biosynthetic process 16.47% (14/85) 2.38 0.0 6e-06
GO:0017056 structural constituent of nuclear pore 4.71% (4/85) 6.04 0.0 6e-06
GO:0031326 regulation of cellular biosynthetic process 16.47% (14/85) 2.38 0.0 6e-06
GO:0005643 nuclear pore 4.71% (4/85) 5.73 1e-06 1.2e-05
GO:0031323 regulation of cellular metabolic process 16.47% (14/85) 2.27 1e-06 1.2e-05
GO:0005048 signal sequence binding 4.71% (4/85) 5.75 1e-06 1.2e-05
GO:0060255 regulation of macromolecule metabolic process 16.47% (14/85) 2.28 1e-06 1.2e-05
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding 5.88% (5/85) 4.75 1e-06 1.3e-05
GO:0042277 peptide binding 4.71% (4/85) 5.63 2e-06 1.4e-05
GO:0019222 regulation of metabolic process 16.47% (14/85) 2.22 2e-06 1.5e-05
GO:0006357 regulation of transcription by RNA polymerase II 8.24% (7/85) 3.63 2e-06 1.5e-05
GO:0000987 cis-regulatory region sequence-specific DNA binding 5.88% (5/85) 4.66 2e-06 1.6e-05
GO:0034504 protein localization to nucleus 4.71% (4/85) 5.4 3e-06 2.2e-05
GO:0006606 protein import into nucleus 4.71% (4/85) 5.4 3e-06 2.2e-05
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific 5.88% (5/85) 4.52 3e-06 2.2e-05
GO:0051170 import into nucleus 4.71% (4/85) 5.39 3e-06 2.2e-05
GO:0033218 amide binding 4.71% (4/85) 5.27 4e-06 2.8e-05
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding 5.88% (5/85) 4.43 4e-06 2.9e-05
GO:0050794 regulation of cellular process 18.82% (16/85) 1.9 5e-06 3.3e-05
GO:0051236 establishment of RNA localization 4.71% (4/85) 5.14 6e-06 3.5e-05
GO:0050657 nucleic acid transport 4.71% (4/85) 5.14 6e-06 3.5e-05
GO:0050658 RNA transport 4.71% (4/85) 5.14 6e-06 3.5e-05
GO:0006405 RNA export from nucleus 4.71% (4/85) 5.16 6e-06 3.6e-05
GO:0003677 DNA binding 14.12% (12/85) 2.26 8e-06 4.5e-05
GO:0003676 nucleic acid binding 21.18% (18/85) 1.69 9e-06 5.1e-05
GO:0050789 regulation of biological process 18.82% (16/85) 1.83 9e-06 5.1e-05
GO:0072594 establishment of protein localization to organelle 5.88% (5/85) 4.04 1.5e-05 8.3e-05
GO:0033365 protein localization to organelle 5.88% (5/85) 3.93 2.2e-05 0.000116
GO:0065007 biological regulation 18.82% (16/85) 1.73 2.2e-05 0.000117
GO:0015031 protein transport 7.06% (6/85) 3.38 2.6e-05 0.000137
GO:0051168 nuclear export 4.71% (4/85) 4.54 2.9e-05 0.000149
GO:0015931 nucleobase-containing compound transport 4.71% (4/85) 4.52 3.1e-05 0.000155
GO:0051640 organelle localization 4.71% (4/85) 4.46 3.7e-05 0.00018
GO:0005488 binding 42.35% (36/85) 0.91 3.8e-05 0.000183
GO:0001067 transcription regulatory region nucleic acid binding 5.88% (5/85) 3.69 4.8e-05 0.000221
GO:0000976 transcription cis-regulatory region binding 5.88% (5/85) 3.69 4.8e-05 0.000221
GO:0008150 biological_process 48.24% (41/85) 0.79 5.1e-05 0.000229
GO:1990837 sequence-specific double-stranded DNA binding 5.88% (5/85) 3.58 6.8e-05 0.000303
GO:0045184 establishment of protein localization 7.06% (6/85) 3.08 8.5e-05 0.000372
GO:0051169 nuclear transport 4.71% (4/85) 4.12 9.2e-05 0.000388
GO:0006913 nucleocytoplasmic transport 4.71% (4/85) 4.12 9.2e-05 0.000388
GO:0006886 intracellular protein transport 5.88% (5/85) 3.46 0.000102 0.000422
GO:0070847 core mediator complex 2.35% (2/85) 7.09 0.000105 0.000428
GO:0033036 macromolecule localization 7.06% (6/85) 2.91 0.000157 0.000609
GO:0070727 cellular macromolecule localization 7.06% (6/85) 2.92 0.000155 0.000613
GO:0008104 protein localization 7.06% (6/85) 2.92 0.000153 0.000615
GO:0032559 adenyl ribonucleotide binding 17.65% (15/85) 1.48 0.00027 0.001034
GO:0006468 protein phosphorylation 11.76% (10/85) 1.94 0.000284 0.00107
GO:0009607 response to biotic stimulus 9.41% (8/85) 2.24 0.000311 0.001092
GO:0044419 biological process involved in interspecies interaction between organisms 9.41% (8/85) 2.24 0.000307 0.001093
GO:0043207 response to external biotic stimulus 9.41% (8/85) 2.24 0.000305 0.001102
GO:0098542 defense response to other organism 9.41% (8/85) 2.24 0.000305 0.001118
GO:0051707 response to other organism 9.41% (8/85) 2.24 0.000305 0.001118
GO:0016310 phosphorylation 11.76% (10/85) 1.89 0.000361 0.001247
GO:0004672 protein kinase activity 11.76% (10/85) 1.89 0.000374 0.001274
GO:0071705 nitrogen compound transport 7.06% (6/85) 2.65 0.000414 0.001356
GO:0006796 phosphate-containing compound metabolic process 14.12% (12/85) 1.66 0.000409 0.001356
GO:0030554 adenyl nucleotide binding 17.65% (15/85) 1.42 0.000407 0.001371
GO:0003690 double-stranded DNA binding 5.88% (5/85) 3.0 0.00043 0.001374
GO:0006952 defense response 9.41% (8/85) 2.16 0.000436 0.001374
GO:0006793 phosphorus metabolic process 14.12% (12/85) 1.65 0.00043 0.001391
GO:0009605 response to external stimulus 9.41% (8/85) 2.15 0.000467 0.001454
GO:0032555 purine ribonucleotide binding 17.65% (15/85) 1.4 0.000485 0.00149
GO:0032553 ribonucleotide binding 17.65% (15/85) 1.39 0.000528 0.001603
GO:0097367 carbohydrate derivative binding 17.65% (15/85) 1.38 0.000571 0.001712
GO:0004674 protein serine/threonine kinase activity 7.06% (6/85) 2.51 0.000685 0.002031
GO:0051276 chromosome organization 4.71% (4/85) 3.34 0.000704 0.002061
GO:0017076 purine nucleotide binding 17.65% (15/85) 1.34 0.000721 0.002087
GO:0005198 structural molecule activity 4.71% (4/85) 3.3 0.000773 0.002212
GO:0016773 phosphotransferase activity, alcohol group as acceptor 11.76% (10/85) 1.74 0.000842 0.002382
GO:0016772 transferase activity, transferring phosphorus-containing groups 12.94% (11/85) 1.62 0.000891 0.002493
GO:0051641 cellular localization 7.06% (6/85) 2.41 0.000967 0.002676
GO:0000166 nucleotide binding 17.65% (15/85) 1.28 0.001142 0.00309
GO:1901265 nucleoside phosphate binding 17.65% (15/85) 1.28 0.001142 0.00309
GO:0016301 kinase activity 11.76% (10/85) 1.67 0.001157 0.003097
GO:0046907 intracellular transport 5.88% (5/85) 2.66 0.001228 0.003252
GO:0071702 organic substance transport 7.06% (6/85) 2.32 0.001333 0.003495
GO:0043168 anion binding 17.65% (15/85) 1.25 0.00136 0.003528
GO:0051649 establishment of localization in cell 5.88% (5/85) 2.61 0.001424 0.003656
GO:1901363 heterocyclic compound binding 17.65% (15/85) 1.24 0.001496 0.003802
GO:0036094 small molecule binding 17.65% (15/85) 1.23 0.001599 0.004021
GO:0043565 sequence-specific DNA binding 5.88% (5/85) 2.54 0.00176 0.004339
GO:0140513 nuclear protein-containing complex 7.06% (6/85) 2.24 0.00176 0.004382
GO:0045046 protein import into peroxisome membrane 1.18% (1/85) 8.79 0.002261 0.005519
GO:0016592 mediator complex 2.35% (2/85) 4.76 0.002554 0.006173
GO:0005524 ATP binding 12.94% (11/85) 1.39 0.00306 0.007326
GO:0035639 purine ribonucleoside triphosphate binding 12.94% (11/85) 1.29 0.005188 0.012304
GO:0004749 ribose phosphate diphosphokinase activity 1.18% (1/85) 7.33 0.006205 0.014046
GO:0046391 5-phosphoribose 1-diphosphate metabolic process 1.18% (1/85) 7.33 0.006205 0.014046
GO:0006015 5-phosphoribose 1-diphosphate biosynthetic process 1.18% (1/85) 7.33 0.006205 0.014046
GO:0002189 ribose phosphate diphosphokinase complex 1.18% (1/85) 7.33 0.006205 0.014046
GO:0090575 RNA polymerase II transcription regulator complex 2.35% (2/85) 4.13 0.006001 0.014097
GO:0043531 ADP binding 5.88% (5/85) 2.06 0.007259 0.016138
GO:0006996 organelle organization 5.88% (5/85) 2.06 0.007252 0.016268
GO:0046975 histone H3K36 methyltransferase activity 1.18% (1/85) 6.93 0.008171 0.018006
GO:0140096 catalytic activity, acting on a protein 12.94% (11/85) 1.2 0.008248 0.018014
GO:0005779 obsolete integral component of peroxisomal membrane 1.18% (1/85) 6.86 0.008592 0.018604
GO:0046983 protein dimerization activity 3.53% (3/85) 2.84 0.008695 0.018664
GO:0036211 protein modification process 11.76% (10/85) 1.24 0.009486 0.020188
GO:0045944 positive regulation of transcription by RNA polymerase II 2.35% (2/85) 3.69 0.010715 0.02261
GO:0006950 response to stress 9.41% (8/85) 1.39 0.011384 0.02382
GO:0043167 ion binding 18.82% (16/85) 0.87 0.012491 0.025919
GO:0016778 diphosphotransferase activity 1.18% (1/85) 6.07 0.014745 0.030342
GO:0032991 protein-containing complex 10.59% (9/85) 1.19 0.016893 0.034478
GO:0008195 phosphatidate phosphatase activity 1.18% (1/85) 5.83 0.017389 0.034919
GO:0003674 molecular_function 47.06% (40/85) 0.41 0.017317 0.035056
GO:0003712 transcription coregulator activity 2.35% (2/85) 3.27 0.018621 0.037092
GO:0042577 lipid phosphatase activity 1.18% (1/85) 5.65 0.01975 0.03903
GO:0043412 macromolecule modification 11.76% (10/85) 1.06 0.021254 0.041671
GO:0072663 establishment of protein localization to peroxisome 1.18% (1/85) 5.47 0.022243 0.042605
GO:0072662 protein localization to peroxisome 1.18% (1/85) 5.47 0.022243 0.042605
GO:0050896 response to stimulus 9.41% (8/85) 1.22 0.021903 0.042608
GO:0005667 transcription regulator complex 2.35% (2/85) 3.11 0.022934 0.043592
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (85) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms