Coexpression cluster: Cluster_25 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds 6.49% (15/231) 3.1 0.0 0.0
GO:0016798 hydrolase activity, acting on glycosyl bonds 6.49% (15/231) 2.88 0.0 0.0
GO:0005576 extracellular region 3.9% (9/231) 4.08 0.0 0.0
GO:0004097 catechol oxidase activity 1.73% (4/231) 7.85 0.0 1e-06
GO:0009408 response to heat 2.6% (6/231) 4.86 0.0 6e-06
GO:0000254 C-4 methylsterol oxidase activity 1.73% (4/231) 6.38 0.0 9e-06
GO:0016716 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, another compound as one donor, and incorporation of one atom of oxygen 1.73% (4/231) 6.38 0.0 9e-06
GO:0009266 response to temperature stimulus 2.6% (6/231) 4.57 0.0 1e-05
GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor 1.73% (4/231) 6.3 0.0 1e-05
GO:0016762 xyloglucan:xyloglucosyl transferase activity 1.73% (4/231) 6.44 0.0 1e-05
GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors 1.73% (4/231) 6.11 0.0 1.4e-05
GO:0005975 carbohydrate metabolic process 6.93% (16/231) 2.21 1e-06 1.7e-05
GO:0043565 sequence-specific DNA binding 5.63% (13/231) 2.48 1e-06 2.5e-05
GO:0003700 DNA-binding transcription factor activity 6.06% (14/231) 2.17 4e-06 0.000101
GO:0016126 sterol biosynthetic process 1.73% (4/231) 5.08 7e-06 0.000173
GO:0043295 glutathione binding 1.73% (4/231) 4.99 9e-06 0.000198
GO:0009628 response to abiotic stimulus 3.03% (7/231) 3.3 9e-06 0.000206
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding 2.6% (6/231) 3.57 1.4e-05 0.000271
GO:0048046 apoplast 1.73% (4/231) 4.85 1.3e-05 0.000275
GO:0000987 cis-regulatory region sequence-specific DNA binding 2.6% (6/231) 3.48 2e-05 0.000365
GO:0004364 glutathione transferase activity 2.16% (5/231) 3.92 2.4e-05 0.000414
GO:0140110 transcription regulator activity 6.06% (14/231) 1.92 2.7e-05 0.000447
GO:0046658 obsolete anchored component of plasma membrane 2.16% (5/231) 3.87 2.8e-05 0.000452
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding 2.6% (6/231) 3.25 4.8e-05 0.000731
GO:0006749 glutathione metabolic process 2.16% (5/231) 3.68 5.2e-05 0.000766
GO:0031323 regulation of cellular metabolic process 9.09% (21/231) 1.41 5.5e-05 0.000775
GO:0005634 nucleus 9.52% (22/231) 1.36 5.7e-05 0.000776
GO:0003677 DNA binding 8.23% (19/231) 1.48 6.6e-05 0.000864
GO:0044042 glucan metabolic process 2.6% (6/231) 3.14 7.4e-05 0.000936
GO:0019222 regulation of metabolic process 9.09% (21/231) 1.36 8.5e-05 0.001011
GO:0030234 enzyme regulator activity 3.46% (8/231) 2.55 8.3e-05 0.001021
GO:0006694 steroid biosynthetic process 1.73% (4/231) 4.03 0.000121 0.001394
GO:0098772 molecular function regulator activity 3.46% (8/231) 2.46 0.000128 0.001434
GO:0016125 sterol metabolic process 1.73% (4/231) 3.91 0.000164 0.001679
GO:0005618 cell wall 2.16% (5/231) 3.33 0.00016 0.001688
GO:0051171 regulation of nitrogen compound metabolic process 7.79% (18/231) 1.43 0.000159 0.00173
GO:0080090 regulation of primary metabolic process 7.79% (18/231) 1.42 0.000179 0.001782
GO:0030312 external encapsulating structure 2.16% (5/231) 3.28 0.000187 0.001814
GO:0010337 regulation of salicylic acid metabolic process 1.3% (3/231) 4.76 0.000206 0.001899
GO:0080142 regulation of salicylic acid biosynthetic process 1.3% (3/231) 4.76 0.000206 0.001899
GO:0003674 molecular_function 46.75% (108/231) 0.4 0.000238 0.002139
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity 1.3% (3/231) 4.53 0.000322 0.002586
GO:1904029 regulation of cyclin-dependent protein kinase activity 1.3% (3/231) 4.53 0.000322 0.002586
GO:0044770 cell cycle phase transition 1.3% (3/231) 4.55 0.000314 0.002634
GO:0044772 mitotic cell cycle phase transition 1.3% (3/231) 4.55 0.000314 0.002634
GO:0050794 regulation of cellular process 10.82% (25/231) 1.1 0.0003 0.002636
GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity 1.3% (3/231) 4.45 0.000378 0.002969
GO:2001141 regulation of RNA biosynthetic process 6.49% (15/231) 1.48 0.000405 0.003049
GO:0006355 regulation of DNA-templated transcription 6.49% (15/231) 1.48 0.000405 0.003049
GO:0010565 regulation of cellular ketone metabolic process 1.3% (3/231) 4.35 0.000468 0.003138
GO:0004497 monooxygenase activity 3.46% (8/231) 2.2 0.000428 0.003155
GO:0008202 steroid metabolic process 1.73% (4/231) 3.51 0.000462 0.003155
GO:0009889 regulation of biosynthetic process 7.79% (18/231) 1.3 0.00046 0.003203
GO:0005976 polysaccharide metabolic process 2.6% (6/231) 2.65 0.000443 0.003205
GO:0031326 regulation of cellular biosynthetic process 7.79% (18/231) 1.3 0.000456 0.003237
GO:0062012 regulation of small molecule metabolic process 1.3% (3/231) 4.22 0.000602 0.003969
GO:0050789 regulation of biological process 10.82% (25/231) 1.03 0.000613 0.003971
GO:0051252 regulation of RNA metabolic process 6.49% (15/231) 1.4 0.000674 0.004286
GO:0001067 transcription regulatory region nucleic acid binding 2.6% (6/231) 2.51 0.000745 0.004507
GO:0000976 transcription cis-regulatory region binding 2.6% (6/231) 2.51 0.000745 0.004507
GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups 2.16% (5/231) 2.85 0.000723 0.004524
GO:0071900 regulation of protein serine/threonine kinase activity 1.3% (3/231) 4.06 0.000829 0.004934
GO:0016491 oxidoreductase activity 6.93% (16/231) 1.31 0.000888 0.005202
GO:1901617 organic hydroxy compound biosynthetic process 1.73% (4/231) 3.22 0.000973 0.005609
GO:0019219 regulation of nucleobase-containing compound metabolic process 6.49% (15/231) 1.35 0.000998 0.005665
GO:0060255 regulation of macromolecule metabolic process 7.79% (18/231) 1.2 0.001048 0.00586
GO:1990837 sequence-specific double-stranded DNA binding 2.6% (6/231) 2.4 0.001093 0.005932
GO:0046983 protein dimerization activity 2.6% (6/231) 2.4 0.001088 0.00599
GO:0043549 regulation of kinase activity 1.3% (3/231) 3.9 0.001141 0.006014
GO:0045859 regulation of protein kinase activity 1.3% (3/231) 3.91 0.001128 0.006034
GO:0000307 cyclin-dependent protein kinase holoenzyme complex 1.3% (3/231) 3.87 0.001211 0.006293
GO:0042325 regulation of phosphorylation 1.3% (3/231) 3.78 0.001444 0.0073
GO:0001932 regulation of protein phosphorylation 1.3% (3/231) 3.79 0.00143 0.007328
GO:0065007 biological regulation 10.82% (25/231) 0.93 0.001639 0.008175
GO:0009055 electron transfer activity 1.3% (3/231) 3.63 0.001947 0.009581
GO:0005789 endoplasmic reticulum membrane 1.73% (4/231) 2.92 0.00208 0.0101
GO:0051338 regulation of transferase activity 1.3% (3/231) 3.51 0.002476 0.011865
GO:0009251 glucan catabolic process 0.87% (2/231) 4.78 0.002519 0.011916
GO:0019887 protein kinase regulator activity 1.3% (3/231) 3.47 0.002642 0.012338
GO:0051174 regulation of phosphorus metabolic process 1.3% (3/231) 3.41 0.002982 0.013417
GO:0019220 regulation of phosphate metabolic process 1.3% (3/231) 3.41 0.002982 0.013417
GO:0019207 kinase regulator activity 1.3% (3/231) 3.42 0.002914 0.01344
GO:1902554 serine/threonine protein kinase complex 1.3% (3/231) 3.3 0.00374 0.016625
GO:0031399 regulation of protein modification process 1.3% (3/231) 3.26 0.004007 0.017394
GO:1902911 protein kinase complex 1.3% (3/231) 3.26 0.003966 0.017422
GO:0005515 protein binding 12.55% (29/231) 0.75 0.004513 0.019364
GO:0006357 regulation of transcription by RNA polymerase II 2.6% (6/231) 1.97 0.004733 0.020076
GO:0005516 calmodulin binding 1.3% (3/231) 3.17 0.004801 0.020129
GO:0010411 xyloglucan metabolic process 0.87% (2/231) 4.25 0.005137 0.021297
GO:0016207 4-coumarate-CoA ligase activity 0.43% (1/231) 7.54 0.005368 0.02201
GO:0010468 regulation of gene expression 6.49% (15/231) 1.07 0.005827 0.023629
GO:0010556 regulation of macromolecule biosynthetic process 6.49% (15/231) 1.06 0.006185 0.024806
GO:0015630 microtubule cytoskeleton 0.87% (2/231) 4.0 0.007181 0.028493
GO:0051119 sugar transmembrane transporter activity 0.87% (2/231) 3.96 0.007523 0.029533
GO:0003690 double-stranded DNA binding 2.6% (6/231) 1.82 0.007665 0.029772
GO:0010476 gibberellin mediated signaling pathway 0.43% (1/231) 6.89 0.008423 0.032042
GO:0009740 gibberellic acid mediated signaling pathway 0.43% (1/231) 6.89 0.008423 0.032042
GO:0009937 regulation of gibberellic acid mediated signaling pathway 0.43% (1/231) 6.82 0.008804 0.03315
GO:0008150 biological_process 35.06% (81/231) 0.33 0.009607 0.0351
GO:0008643 carbohydrate transport 0.87% (2/231) 3.78 0.009581 0.035356
GO:0010286 heat acclimation 0.43% (1/231) 6.7 0.009566 0.035655
GO:0040008 regulation of growth 0.87% (2/231) 3.72 0.010367 0.037504
GO:1901615 organic hydroxy compound metabolic process 1.73% (4/231) 2.22 0.011407 0.040867
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (231) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms