Coexpression cluster: Cluster_180 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0004619 phosphoglycerate mutase activity 7.0% (7/100) 10.11 0.0 0.0
GO:0046537 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity 7.0% (7/100) 10.11 0.0 0.0
GO:0006007 glucose catabolic process 7.0% (7/100) 10.32 0.0 0.0
GO:0044262 obsolete cellular carbohydrate metabolic process 7.0% (7/100) 9.87 0.0 0.0
GO:0016868 intramolecular phosphotransferase activity 7.0% (7/100) 7.93 0.0 0.0
GO:0019320 hexose catabolic process 7.0% (7/100) 7.55 0.0 0.0
GO:0046365 monosaccharide catabolic process 7.0% (7/100) 7.55 0.0 0.0
GO:0030145 manganese ion binding 7.0% (7/100) 7.38 0.0 0.0
GO:0008553 P-type proton-exporting transporter activity 6.0% (6/100) 7.77 0.0 0.0
GO:0006006 glucose metabolic process 7.0% (7/100) 5.97 0.0 0.0
GO:0030641 regulation of cellular pH 6.0% (6/100) 6.27 0.0 0.0
GO:0051453 regulation of intracellular pH 6.0% (6/100) 6.27 0.0 0.0
GO:0016866 intramolecular transferase activity 7.0% (7/100) 5.41 0.0 0.0
GO:0019318 hexose metabolic process 7.0% (7/100) 5.34 0.0 0.0
GO:0006885 regulation of pH 6.0% (6/100) 5.95 0.0 0.0
GO:0140358 P-type transmembrane transporter activity 6.0% (6/100) 5.91 0.0 0.0
GO:0015662 P-type ion transporter activity 6.0% (6/100) 5.91 0.0 0.0
GO:0005996 monosaccharide metabolic process 7.0% (7/100) 5.0 0.0 0.0
GO:0019829 ATPase-coupled monoatomic cation transmembrane transporter activity 6.0% (6/100) 5.42 0.0 0.0
GO:1902600 proton transmembrane transport 6.0% (6/100) 5.35 0.0 0.0
GO:0120029 proton export across plasma membrane 3.0% (3/100) 9.44 0.0 0.0
GO:0030003 intracellular monoatomic cation homeostasis 6.0% (6/100) 4.96 0.0 1e-06
GO:0016052 carbohydrate catabolic process 7.0% (7/100) 4.42 0.0 1e-06
GO:0015078 proton transmembrane transporter activity 6.0% (6/100) 4.85 0.0 1e-06
GO:0006873 intracellular monoatomic ion homeostasis 6.0% (6/100) 4.86 0.0 1e-06
GO:0044282 small molecule catabolic process 7.0% (7/100) 4.24 0.0 1e-06
GO:0055080 monoatomic cation homeostasis 6.0% (6/100) 4.71 0.0 2e-06
GO:0055082 intracellular chemical homeostasis 6.0% (6/100) 4.68 0.0 2e-06
GO:1901575 organic substance catabolic process 12.0% (12/100) 2.8 0.0 2e-06
GO:0050801 monoatomic ion homeostasis 6.0% (6/100) 4.58 0.0 3e-06
GO:0009056 catabolic process 12.0% (12/100) 2.73 0.0 3e-06
GO:0022853 active monoatomic ion transmembrane transporter activity 6.0% (6/100) 4.53 0.0 3e-06
GO:0019725 cellular homeostasis 6.0% (6/100) 4.48 0.0 4e-06
GO:0016853 isomerase activity 7.0% (7/100) 3.77 1e-06 9e-06
GO:0048878 chemical homeostasis 6.0% (6/100) 4.13 1e-06 1.3e-05
GO:0016157 sucrose synthase activity 3.0% (3/100) 7.04 2e-06 1.7e-05
GO:0030433 ubiquitin-dependent ERAD pathway 4.0% (4/100) 5.51 2e-06 1.9e-05
GO:0042592 homeostatic process 6.0% (6/100) 4.01 2e-06 1.9e-05
GO:0098655 monoatomic cation transmembrane transport 6.0% (6/100) 4.02 2e-06 2e-05
GO:0140115 export across plasma membrane 3.0% (3/100) 6.92 2e-06 2e-05
GO:0098662 inorganic cation transmembrane transport 6.0% (6/100) 3.96 3e-06 2.2e-05
GO:0034220 monoatomic ion transmembrane transport 6.0% (6/100) 3.95 3e-06 2.2e-05
GO:0005975 carbohydrate metabolic process 10.0% (10/100) 2.74 3e-06 2.3e-05
GO:0065008 regulation of biological quality 6.0% (6/100) 3.91 3e-06 2.6e-05
GO:0036503 ERAD pathway 4.0% (4/100) 5.29 4e-06 2.9e-05
GO:0098660 inorganic ion transmembrane transport 6.0% (6/100) 3.86 4e-06 3e-05
GO:0010243 response to organonitrogen compound 4.0% (4/100) 5.06 7e-06 5.1e-05
GO:0000839 Hrd1p ubiquitin ligase ERAD-L complex 2.0% (2/100) 8.8 1e-05 6e-05
GO:1990381 ubiquitin-specific protease binding 2.0% (2/100) 8.8 1e-05 6e-05
GO:0000836 Hrd1p ubiquitin ligase complex 2.0% (2/100) 8.8 1e-05 6e-05
GO:0000835 ER ubiquitin ligase complex 2.0% (2/100) 8.8 1e-05 6e-05
GO:0002020 protease binding 2.0% (2/100) 8.8 1e-05 6e-05
GO:1901698 response to nitrogen compound 4.0% (4/100) 4.86 1.2e-05 7.7e-05
GO:0006457 protein folding 5.0% (5/100) 4.07 1.4e-05 8.2e-05
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process 5.0% (5/100) 4.08 1.4e-05 8.2e-05
GO:0140534 endoplasmic reticulum protein-containing complex 4.0% (4/100) 4.79 1.5e-05 8.8e-05
GO:0042626 ATPase-coupled transmembrane transporter activity 6.0% (6/100) 3.44 2.2e-05 0.00012
GO:0006812 monoatomic cation transport 6.0% (6/100) 3.44 2.1e-05 0.000121
GO:0010498 proteasomal protein catabolic process 5.0% (5/100) 3.94 2.1e-05 0.000122
GO:0034976 response to endoplasmic reticulum stress 4.0% (4/100) 4.64 2.3e-05 0.000125
GO:0022890 inorganic cation transmembrane transporter activity 6.0% (6/100) 3.38 2.7e-05 0.000144
GO:0030163 protein catabolic process 5.0% (5/100) 3.82 3.2e-05 0.000166
GO:0015399 primary active transmembrane transporter activity 6.0% (6/100) 3.34 3.2e-05 0.000168
GO:0005985 sucrose metabolic process 3.0% (3/100) 5.6 3.6e-05 0.000186
GO:0034098 VCP-NPL4-UFD1 AAA ATPase complex 2.0% (2/100) 7.83 3.8e-05 0.000189
GO:0006811 monoatomic ion transport 6.0% (6/100) 3.25 4.5e-05 0.000225
GO:0008324 monoatomic cation transmembrane transporter activity 6.0% (6/100) 3.24 4.7e-05 0.000227
GO:0051787 misfolded protein binding 2.0% (2/100) 7.38 7e-05 0.000334
GO:0000153 cytoplasmic ubiquitin ligase complex 2.0% (2/100) 7.31 7.8e-05 0.000367
GO:0006656 phosphatidylcholine biosynthetic process 2.0% (2/100) 7.29 8e-05 0.000372
GO:0015318 inorganic molecular entity transmembrane transporter activity 6.0% (6/100) 3.08 8.6e-05 0.000394
GO:0051087 protein-folding chaperone binding 3.0% (3/100) 5.11 9.9e-05 0.000449
GO:0006511 ubiquitin-dependent protein catabolic process 5.0% (5/100) 3.46 0.000102 0.000455
GO:0017111 ribonucleoside triphosphate phosphatase activity 7.0% (7/100) 2.67 0.00013 0.000566
GO:0046470 phosphatidylcholine metabolic process 2.0% (2/100) 6.94 0.000129 0.00057
GO:0015075 monoatomic ion transmembrane transporter activity 6.0% (6/100) 2.96 0.000135 0.000579
GO:0019941 modification-dependent protein catabolic process 5.0% (5/100) 3.32 0.000158 0.00067
GO:0043632 modification-dependent macromolecule catabolic process 5.0% (5/100) 3.26 0.000191 0.0008
GO:0016462 pyrophosphatase activity 7.0% (7/100) 2.57 0.000196 0.00081
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 7.0% (7/100) 2.54 0.000217 0.000887
GO:0016817 hydrolase activity, acting on acid anhydrides 7.0% (7/100) 2.53 0.00023 0.000927
GO:0005984 disaccharide metabolic process 3.0% (3/100) 4.69 0.000233 0.000929
GO:0071712 ER-associated misfolded protein catabolic process 2.0% (2/100) 6.44 0.000255 0.001006
GO:0009311 oligosaccharide metabolic process 3.0% (3/100) 4.53 0.00032 0.001244
GO:0005488 binding 38.0% (38/100) 0.75 0.00036 0.001387
GO:0022804 active transmembrane transporter activity 6.0% (6/100) 2.68 0.00038 0.001445
GO:0030968 endoplasmic reticulum unfolded protein response 2.0% (2/100) 6.09 0.000414 0.001557
GO:0051603 proteolysis involved in protein catabolic process 5.0% (5/100) 2.98 0.000466 0.001732
GO:0051084 'de novo' post-translational protein folding 2.0% (2/100) 5.89 0.00055 0.001998
GO:0051085 chaperone cofactor-dependent protein refolding 2.0% (2/100) 5.89 0.00055 0.001998
GO:0031593 polyubiquitin modification-dependent protein binding 2.0% (2/100) 5.8 0.000616 0.002167
GO:0010033 response to organic substance 4.0% (4/100) 3.4 0.000612 0.002174
GO:0044183 protein folding chaperone 3.0% (3/100) 4.21 0.000609 0.002187
GO:0140352 export from cell 3.0% (3/100) 4.16 0.000676 0.002351
GO:0140030 modification-dependent protein binding 2.0% (2/100) 5.53 0.000904 0.003113
GO:0006458 'de novo' protein folding 2.0% (2/100) 5.47 0.000974 0.003318
GO:0016887 ATP hydrolysis activity 5.0% (5/100) 2.72 0.001046 0.003526
GO:1901565 organonitrogen compound catabolic process 5.0% (5/100) 2.7 0.001099 0.003668
GO:0018364 peptidyl-glutamine methylation 1.0% (1/100) 9.75 0.001164 0.003846
GO:0006515 protein quality control for misfolded or incompletely synthesized proteins 2.0% (2/100) 5.32 0.001198 0.003918
GO:0042221 response to chemical 4.0% (4/100) 3.03 0.001546 0.005005
GO:0061077 chaperone-mediated protein folding 2.0% (2/100) 5.09 0.00163 0.005227
GO:0140657 ATP-dependent activity 7.0% (7/100) 2.01 0.001859 0.005903
GO:0005759 mitochondrial matrix 2.0% (2/100) 4.97 0.001934 0.006081
GO:0009057 macromolecule catabolic process 5.0% (5/100) 2.47 0.00223 0.006944
GO:0030176 obsolete integral component of endoplasmic reticulum membrane 2.0% (2/100) 4.77 0.002514 0.007755
GO:0043233 organelle lumen 2.0% (2/100) 4.54 0.003458 0.010375
GO:0031974 membrane-enclosed lumen 2.0% (2/100) 4.54 0.003458 0.010375
GO:0070013 intracellular organelle lumen 2.0% (2/100) 4.54 0.003458 0.010375
GO:0031468 nuclear membrane reassembly 1.0% (1/100) 8.09 0.003655 0.010766
GO:0046872 metal ion binding 9.0% (9/100) 1.56 0.003623 0.010769
GO:0043169 cation binding 9.0% (9/100) 1.52 0.004302 0.012561
GO:0071709 membrane assembly 1.0% (1/100) 7.75 0.004649 0.013454
GO:0070476 rRNA (guanine-N7)-methylation 1.0% (1/100) 7.7 0.004815 0.013811
GO:0046914 transition metal ion binding 7.0% (7/100) 1.73 0.005354 0.015225
GO:0098796 membrane protein complex 4.0% (4/100) 2.52 0.005491 0.015479
GO:0043167 ion binding 19.0% (19/100) 0.88 0.006243 0.01745
GO:0035251 UDP-glucosyltransferase activity 3.0% (3/100) 3.01 0.006401 0.017737
GO:0035639 purine ribonucleoside triphosphate binding 12.0% (12/100) 1.18 0.006627 0.018211
GO:0036265 RNA (guanine-N7)-methylation 1.0% (1/100) 6.72 0.009442 0.025729
GO:0044281 small molecule metabolic process 7.0% (7/100) 1.56 0.01003 0.026883
GO:0051082 unfolded protein binding 2.0% (2/100) 3.74 0.010001 0.027027
GO:0046527 glucosyltransferase activity 3.0% (3/100) 2.73 0.010856 0.028861
GO:0071763 nuclear membrane organization 1.0% (1/100) 6.36 0.012076 0.031846
GO:0055038 recycling endosome membrane 1.0% (1/100) 6.29 0.012734 0.033311
GO:0006508 proteolysis 5.0% (5/100) 1.82 0.014155 0.036446
GO:0044238 primary metabolic process 23.0% (23/100) 0.68 0.014077 0.036532
GO:0005886 plasma membrane 6.0% (6/100) 1.61 0.014393 0.03677
GO:0032588 trans-Golgi network membrane 1.0% (1/100) 6.05 0.015031 0.038103
GO:0005737 cytoplasm 8.0% (8/100) 1.31 0.01572 0.039541
GO:0051234 establishment of localization 9.0% (9/100) 1.21 0.01593 0.039763
GO:0055085 transmembrane transport 6.0% (6/100) 1.56 0.016486 0.040839
GO:0005515 protein binding 14.0% (14/100) 0.9 0.017087 0.04201
GO:0046474 glycerophospholipid biosynthetic process 2.0% (2/100) 3.29 0.018122 0.044224
GO:0051179 localization 9.0% (9/100) 1.16 0.01971 0.047742
GO:0005575 cellular_component 29.0% (29/100) 0.54 0.019912 0.047876
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (100) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms