Coexpression cluster: Cluster_564 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0061928 glutathione specific gamma-glutamylcyclotransferase activity 3.61% (3/83) 9.88 0.0 1e-06
GO:0003839 gamma-glutamylcyclotransferase activity 3.61% (3/83) 9.95 0.0 1e-06
GO:0016842 amidine-lyase activity 3.61% (3/83) 8.57 0.0 4e-06
GO:0006751 glutathione catabolic process 3.61% (3/83) 8.57 0.0 4e-06
GO:0042284 sphingolipid delta-4 desaturase activity 2.41% (2/83) 11.01 0.0 1.9e-05
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific 6.02% (5/83) 4.56 3e-06 0.000107
GO:0005507 copper ion binding 4.82% (4/83) 5.32 4e-06 0.00012
GO:0045893 positive regulation of DNA-templated transcription 6.02% (5/83) 4.26 7e-06 0.000189
GO:1902680 positive regulation of RNA biosynthetic process 6.02% (5/83) 4.26 7e-06 0.000189
GO:0002094 polyprenyltransferase activity 2.41% (2/83) 8.78 1e-05 0.000236
GO:0031328 positive regulation of cellular biosynthetic process 6.02% (5/83) 3.97 1.9e-05 0.000264
GO:0010557 positive regulation of macromolecule biosynthetic process 6.02% (5/83) 3.97 1.9e-05 0.000264
GO:0009891 positive regulation of biosynthetic process 6.02% (5/83) 3.97 1.9e-05 0.000264
GO:0045935 positive regulation of nucleobase-containing compound metabolic process 6.02% (5/83) 3.93 2.1e-05 0.000269
GO:0043565 sequence-specific DNA binding 8.43% (7/83) 3.06 2.3e-05 0.000269
GO:0045547 dehydrodolichyl diphosphate synthase activity 2.41% (2/83) 8.61 1.3e-05 0.000271
GO:0016094 polyprenol biosynthetic process 2.41% (2/83) 8.24 2.1e-05 0.00028
GO:0016840 carbon-nitrogen lyase activity 3.61% (3/83) 6.05 1.4e-05 0.000284
GO:0003700 DNA-binding transcription factor activity 9.64% (8/83) 2.84 1.7e-05 0.000289
GO:0051254 positive regulation of RNA metabolic process 6.02% (5/83) 4.01 1.7e-05 0.000303
GO:0071421 manganese ion transmembrane transport 2.41% (2/83) 7.76 4.1e-05 0.000411
GO:0006828 manganese ion transport 2.41% (2/83) 7.76 4.1e-05 0.000411
GO:0032472 Golgi calcium ion transport 2.41% (2/83) 7.76 4.1e-05 0.000411
GO:0032468 Golgi calcium ion homeostasis 2.41% (2/83) 7.76 4.1e-05 0.000411
GO:0031325 positive regulation of cellular metabolic process 6.02% (5/83) 3.66 5.2e-05 0.000498
GO:0140110 transcription regulator activity 9.64% (8/83) 2.59 5.8e-05 0.000533
GO:0003824 catalytic activity 36.14% (30/83) 1.0 7.5e-05 0.00066
GO:0048522 positive regulation of cellular process 6.02% (5/83) 3.48 9.2e-05 0.000786
GO:0009893 positive regulation of metabolic process 6.02% (5/83) 3.44 0.000106 0.000816
GO:0051173 positive regulation of nitrogen compound metabolic process 6.02% (5/83) 3.46 0.0001 0.000818
GO:0010604 positive regulation of macromolecule metabolic process 6.02% (5/83) 3.44 0.000106 0.000841
GO:0003674 molecular_function 55.42% (46/83) 0.65 0.000148 0.0011
GO:0046513 ceramide biosynthetic process 2.41% (2/83) 6.71 0.000176 0.001232
GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water 2.41% (2/83) 6.73 0.000171 0.001233
GO:0048518 positive regulation of biological process 6.02% (5/83) 3.22 0.000213 0.001452
GO:0016093 polyprenol metabolic process 2.41% (2/83) 6.27 0.000322 0.002131
GO:0006749 glutathione metabolic process 3.61% (3/83) 4.42 0.000398 0.00256
GO:0006672 ceramide metabolic process 2.41% (2/83) 5.95 0.000503 0.003152
GO:0016491 oxidoreductase activity 10.84% (9/83) 1.96 0.000528 0.003225
GO:0003677 DNA binding 10.84% (9/83) 1.88 0.000768 0.004567
GO:0004650 polygalacturonase activity 2.41% (2/83) 5.55 0.000878 0.005097
GO:0004659 prenyltransferase activity 2.41% (2/83) 5.51 0.000918 0.0052
GO:0005384 manganese ion transmembrane transporter activity 2.41% (2/83) 5.45 0.000999 0.005532
GO:0030148 sphingolipid biosynthetic process 2.41% (2/83) 5.31 0.001218 0.006591
GO:0055074 calcium ion homeostasis 2.41% (2/83) 5.24 0.001339 0.006929
GO:0006874 intracellular calcium ion homeostasis 2.41% (2/83) 5.24 0.001339 0.006929
GO:0006665 sphingolipid metabolic process 2.41% (2/83) 4.99 0.001885 0.009547
GO:0000041 transition metal ion transport 2.41% (2/83) 4.94 0.002 0.009918
GO:0070588 calcium ion transmembrane transport 2.41% (2/83) 4.89 0.002153 0.010456
GO:0006816 calcium ion transport 2.41% (2/83) 4.81 0.002391 0.011383
GO:0046165 alcohol biosynthetic process 2.41% (2/83) 4.69 0.002826 0.013186
GO:0015085 calcium ion transmembrane transporter activity 2.41% (2/83) 4.61 0.003117 0.014266
GO:0006355 regulation of DNA-templated transcription 8.43% (7/83) 1.85 0.003346 0.014745
GO:2001141 regulation of RNA biosynthetic process 8.43% (7/83) 1.85 0.003346 0.014745
GO:0046872 metal ion binding 9.64% (8/83) 1.66 0.003914 0.016937
GO:0046915 transition metal ion transmembrane transporter activity 2.41% (2/83) 4.39 0.004248 0.018054
GO:0051252 regulation of RNA metabolic process 8.43% (7/83) 1.78 0.004388 0.018323
GO:0043169 cation binding 9.64% (8/83) 1.62 0.004583 0.018488
GO:0016740 transferase activity 16.87% (14/83) 1.12 0.004525 0.01857
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen 4.82% (4/83) 2.53 0.00533 0.020794
GO:0019219 regulation of nucleobase-containing compound metabolic process 8.43% (7/83) 1.72 0.00542 0.020807
GO:0008610 lipid biosynthetic process 4.82% (4/83) 2.51 0.00552 0.020853
GO:0005794 Golgi apparatus 3.61% (3/83) 3.1 0.005319 0.021099
GO:0005886 plasma membrane 7.23% (6/83) 1.88 0.006023 0.0224
GO:0010374 stomatal complex development 1.2% (1/83) 7.3 0.006334 0.0225
GO:0090558 plant epidermis development 1.2% (1/83) 7.3 0.006334 0.0225
GO:0098771 inorganic ion homeostasis 2.41% (2/83) 4.1 0.006204 0.022716
GO:0010052 guard cell differentiation 1.2% (1/83) 7.21 0.006746 0.023268
GO:0090627 plant epidermal cell differentiation 1.2% (1/83) 7.21 0.006746 0.023268
GO:0046658 obsolete anchored component of plasma membrane 2.41% (2/83) 4.02 0.006901 0.023465
GO:0046914 transition metal ion binding 7.23% (6/83) 1.78 0.008282 0.027763
GO:0016829 lyase activity 3.61% (3/83) 2.78 0.00979 0.032363
GO:0046467 membrane lipid biosynthetic process 2.41% (2/83) 3.73 0.010149 0.03309
GO:1901617 organic hydroxy compound biosynthetic process 2.41% (2/83) 3.7 0.010579 0.033128
GO:0051171 regulation of nitrogen compound metabolic process 8.43% (7/83) 1.54 0.010382 0.03339
GO:0006066 alcohol metabolic process 2.41% (2/83) 3.7 0.010525 0.033398
GO:0080090 regulation of primary metabolic process 8.43% (7/83) 1.53 0.010893 0.03367
GO:0030003 intracellular monoatomic cation homeostasis 2.41% (2/83) 3.65 0.011331 0.034574
GO:0006643 membrane lipid metabolic process 2.41% (2/83) 3.62 0.01182 0.035609
GO:0006873 intracellular monoatomic ion homeostasis 2.41% (2/83) 3.54 0.013002 0.038681
GO:0008299 isoprenoid biosynthetic process 2.41% (2/83) 3.49 0.013967 0.04104
GO:0010468 regulation of gene expression 8.43% (7/83) 1.45 0.014337 0.041613
GO:0010556 regulation of macromolecule biosynthetic process 8.43% (7/83) 1.44 0.014828 0.04252
GO:0055080 monoatomic cation homeostasis 2.41% (2/83) 3.4 0.015707 0.044504
GO:0055082 intracellular chemical homeostasis 2.41% (2/83) 3.37 0.016358 0.044749
GO:0009889 regulation of biosynthetic process 8.43% (7/83) 1.41 0.016247 0.044963
GO:0031326 regulation of cellular biosynthetic process 8.43% (7/83) 1.42 0.016188 0.045327
GO:0005544 calcium-dependent phospholipid binding 1.2% (1/83) 5.84 0.017255 0.045631
GO:0019187 beta-1,4-mannosyltransferase activity 1.2% (1/83) 5.86 0.01712 0.045781
GO:0051753 mannan synthase activity 1.2% (1/83) 5.87 0.016984 0.045934
GO:0016757 glycosyltransferase activity 4.82% (4/83) 2.02 0.017581 0.045982
GO:0050801 monoatomic ion homeostasis 2.41% (2/83) 3.27 0.018631 0.04768
GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups 3.61% (3/83) 2.43 0.018523 0.047918
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (83) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms