Coexpression cluster: Cluster_495 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0048194 Golgi vesicle budding 2.7% (3/111) 9.18 0.0 1.2e-05
GO:0009736 cytokinin-activated signaling pathway 3.6% (4/111) 6.4 0.0 5.5e-05
GO:0008235 metalloexopeptidase activity 3.6% (4/111) 6.06 0.0 9.3e-05
GO:0051014 actin filament severing 2.7% (3/111) 7.1 2e-06 0.000234
GO:0000160 phosphorelay signal transduction system 3.6% (4/111) 5.25 4e-06 0.000367
GO:0030695 GTPase regulator activity 4.5% (5/111) 4.44 4e-06 0.00039
GO:0060589 nucleoside-triphosphatase regulator activity 4.5% (5/111) 4.44 4e-06 0.00039
GO:0010309 acireductone dioxygenase [iron(II)-requiring] activity 1.8% (2/111) 9.15 6e-06 0.000418
GO:0005096 GTPase activator activity 3.6% (4/111) 4.76 1.7e-05 0.001064
GO:0003674 molecular_function 54.95% (61/111) 0.64 1.9e-05 0.001116
GO:0045332 phospholipid translocation 2.7% (3/111) 5.66 3.2e-05 0.001241
GO:0008237 metallopeptidase activity 3.6% (4/111) 4.42 4.1e-05 0.001262
GO:0140303 intramembrane lipid transporter activity 2.7% (3/111) 5.67 3.2e-05 0.001305
GO:0008233 peptidase activity 7.21% (8/111) 2.68 4.1e-05 0.001313
GO:0097035 regulation of membrane lipid distribution 2.7% (3/111) 5.49 4.6e-05 0.001329
GO:0004826 phenylalanine-tRNA ligase activity 1.8% (2/111) 7.54 5.6e-05 0.001342
GO:0006432 phenylalanyl-tRNA aminoacylation 1.8% (2/111) 7.54 5.6e-05 0.001342
GO:0009755 hormone-mediated signaling pathway 3.6% (4/111) 4.44 4e-05 0.001352
GO:0009328 phenylalanine-tRNA ligase complex 1.8% (2/111) 7.98 3e-05 0.001355
GO:0006900 vesicle budding from membrane 2.7% (3/111) 5.77 2.6e-05 0.001357
GO:0140326 ATPase-coupled intramembrane lipid transporter activity 2.7% (3/111) 5.72 2.9e-05 0.001385
GO:0034204 lipid translocation 2.7% (3/111) 5.57 3.9e-05 0.001404
GO:0032991 protein-containing complex 14.41% (16/111) 1.64 5.5e-05 0.001442
GO:0015914 phospholipid transport 2.7% (3/111) 5.41 5.4e-05 0.001484
GO:0043812 phosphatidylinositol-4-phosphate phosphatase activity 1.8% (2/111) 7.4 6.8e-05 0.001509
GO:0034596 phosphatidylinositol phosphate 4-phosphatase activity 1.8% (2/111) 7.4 6.8e-05 0.001509
GO:0008150 biological_process 45.05% (50/111) 0.7 7.9e-05 0.001689
GO:0003779 actin binding 3.6% (4/111) 4.05 0.00011 0.002204
GO:0052744 phosphatidylinositol monophosphate phosphatase activity 1.8% (2/111) 7.06 0.000109 0.002248
GO:0098588 bounding membrane of organelle 5.41% (6/111) 2.99 0.00012 0.002329
GO:0009987 cellular process 33.33% (37/111) 0.86 0.000127 0.002378
GO:0031090 organelle membrane 6.31% (7/111) 2.63 0.000153 0.002779
GO:0032045 guanyl-nucleotide exchange factor complex 1.8% (2/111) 6.76 0.000165 0.002907
GO:0008047 enzyme activator activity 3.6% (4/111) 3.85 0.000187 0.003095
GO:0005802 trans-Golgi network 3.6% (4/111) 3.86 0.000184 0.00313
GO:0015748 organophosphate ester transport 2.7% (3/111) 4.72 0.000221 0.003465
GO:0008238 exopeptidase activity 3.6% (4/111) 3.8 0.000217 0.0035
GO:0140677 molecular function activator activity 3.6% (4/111) 3.76 0.000236 0.003598
GO:0098791 Golgi apparatus subcompartment 3.6% (4/111) 3.73 0.000256 0.003814
GO:0031984 organelle subcompartment 3.6% (4/111) 3.7 0.000281 0.004074
GO:0016192 vesicle-mediated transport 5.41% (6/111) 2.72 0.000327 0.004633
GO:0030029 actin filament-based process 2.7% (3/111) 4.43 0.000396 0.005469
GO:0006555 methionine metabolic process 1.8% (2/111) 5.97 0.000493 0.006351
GO:0048193 Golgi vesicle transport 3.6% (4/111) 3.49 0.000475 0.006408
GO:0016050 vesicle organization 2.7% (3/111) 4.32 0.000489 0.006447
GO:0070205 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase activity 0.9% (1/111) 10.82 0.000554 0.006837
GO:0030234 enzyme regulator activity 4.5% (5/111) 2.93 0.000552 0.006965
GO:0005319 lipid transporter activity 2.7% (3/111) 4.24 0.000581 0.007024
GO:0000148 1,3-beta-D-glucan synthase complex 1.8% (2/111) 5.67 0.000744 0.007993
GO:0006074 (1->3)-beta-D-glucan metabolic process 1.8% (2/111) 5.67 0.000744 0.007993
GO:0006075 (1->3)-beta-D-glucan biosynthetic process 1.8% (2/111) 5.67 0.000744 0.007993
GO:0003843 1,3-beta-D-glucan synthase activity 1.8% (2/111) 5.67 0.000744 0.007993
GO:0098772 molecular function regulator activity 4.5% (5/111) 2.84 0.000735 0.008529
GO:0051641 cellular localization 6.31% (7/111) 2.25 0.000732 0.008663
GO:0006869 lipid transport 2.7% (3/111) 4.06 0.000829 0.008741
GO:0071702 organic substance transport 6.31% (7/111) 2.16 0.001054 0.010913
GO:0006893 Golgi to plasma membrane transport 1.8% (2/111) 5.37 0.001112 0.011314
GO:0098796 membrane protein complex 4.5% (5/111) 2.69 0.001155 0.011358
GO:0051015 actin filament binding 2.7% (3/111) 3.89 0.001147 0.011469
GO:0051234 establishment of localization 10.81% (12/111) 1.48 0.001301 0.012578
GO:0005575 cellular_component 32.43% (36/111) 0.7 0.001375 0.013075
GO:0042147 retrograde transport, endosome to Golgi 1.8% (2/111) 5.15 0.001511 0.014137
GO:0046527 glucosyltransferase activity 3.6% (4/111) 2.99 0.001717 0.015806
GO:0006520 amino acid metabolic process 4.5% (5/111) 2.55 0.001776 0.015847
GO:0051179 localization 10.81% (12/111) 1.42 0.001769 0.016034
GO:0016758 hexosyltransferase activity 4.5% (5/111) 2.53 0.001853 0.016045
GO:0051668 localization within membrane 2.7% (3/111) 3.65 0.001846 0.016224
GO:0016482 cytosolic transport 1.8% (2/111) 4.94 0.002014 0.017174
GO:0098876 vesicle-mediated transport to the plasma membrane 1.8% (2/111) 4.84 0.002314 0.019176
GO:0000096 sulfur amino acid metabolic process 1.8% (2/111) 4.84 0.002302 0.019353
GO:0030906 retromer, cargo-selective complex 0.9% (1/111) 8.6 0.002583 0.0211
GO:0098797 plasma membrane protein complex 1.8% (2/111) 4.74 0.002622 0.021123
GO:0006810 transport 9.91% (11/111) 1.42 0.002869 0.022794
GO:0035556 intracellular signal transduction 3.6% (4/111) 2.74 0.003169 0.023873
GO:0031968 organelle outer membrane 2.7% (3/111) 3.39 0.003055 0.023941
GO:0006892 post-Golgi vesicle-mediated transport 1.8% (2/111) 4.59 0.003222 0.02396
GO:0030126 COPI vesicle coat 1.8% (2/111) 4.61 0.003153 0.02406
GO:0046524 sucrose-phosphate synthase activity 0.9% (1/111) 8.31 0.003136 0.024248
GO:0004733 pyridoxamine phosphate oxidase activity 0.9% (1/111) 8.15 0.003504 0.025402
GO:0042083 5,10-methylenetetrahydrofolate-dependent methyltransferase activity 0.9% (1/111) 8.08 0.003688 0.025464
GO:0006231 dTMP biosynthetic process 0.9% (1/111) 8.08 0.003688 0.025464
GO:0046073 dTMP metabolic process 0.9% (1/111) 8.08 0.003688 0.025464
GO:0004799 thymidylate synthase activity 0.9% (1/111) 8.08 0.003688 0.025464
GO:0019867 outer membrane 2.7% (3/111) 3.32 0.003499 0.025689
GO:0009176 pyrimidine deoxyribonucleoside monophosphate metabolic process 0.9% (1/111) 7.88 0.00424 0.027631
GO:0009177 pyrimidine deoxyribonucleoside monophosphate biosynthetic process 0.9% (1/111) 7.88 0.00424 0.027631
GO:0009162 deoxyribonucleoside monophosphate metabolic process 0.9% (1/111) 7.88 0.00424 0.027631
GO:0009157 deoxyribonucleoside monophosphate biosynthetic process 0.9% (1/111) 7.88 0.00424 0.027631
GO:0061024 membrane organization 2.7% (3/111) 3.24 0.004112 0.028062
GO:0009219 pyrimidine deoxyribonucleotide metabolic process 0.9% (1/111) 7.6 0.005159 0.028772
GO:0009265 2'-deoxyribonucleotide biosynthetic process 0.9% (1/111) 7.6 0.005159 0.028772
GO:0046385 deoxyribose phosphate biosynthetic process 0.9% (1/111) 7.6 0.005159 0.028772
GO:0009221 pyrimidine deoxyribonucleotide biosynthetic process 0.9% (1/111) 7.6 0.005159 0.028772
GO:0004175 endopeptidase activity 3.6% (4/111) 2.54 0.005211 0.028784
GO:0046839 phospholipid dephosphorylation 1.8% (2/111) 4.32 0.004645 0.028968
GO:0046856 phosphatidylinositol dephosphorylation 1.8% (2/111) 4.32 0.004645 0.028968
GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum 1.8% (2/111) 4.34 0.004513 0.029084
GO:0008092 cytoskeletal protein binding 3.6% (4/111) 2.59 0.00459 0.029252
GO:0006650 glycerophospholipid metabolic process 2.7% (3/111) 3.15 0.004853 0.029322
GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen 1.8% (2/111) 4.29 0.004812 0.02938
GO:0008615 pyridoxine biosynthetic process 0.9% (1/111) 7.7 0.004792 0.029565
GO:0008676 3-deoxy-8-phosphooctulonate synthase activity 0.9% (1/111) 7.65 0.004975 0.02975
GO:0006508 proteolysis 5.41% (6/111) 1.93 0.005159 0.029921
GO:0044281 small molecule metabolic process 7.21% (8/111) 1.6 0.005145 0.030144
GO:0052866 phosphatidylinositol phosphate phosphatase activity 1.8% (2/111) 4.25 0.005103 0.030202
GO:0009066 aspartate family amino acid metabolic process 1.8% (2/111) 4.17 0.005672 0.031035
GO:0006891 intra-Golgi vesicle-mediated transport 1.8% (2/111) 4.09 0.006288 0.034082
GO:0005886 plasma membrane 6.31% (7/111) 1.68 0.006553 0.03455
GO:0004146 dihydrofolate reductase activity 0.9% (1/111) 7.27 0.006445 0.034611
GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen 1.8% (2/111) 4.06 0.006538 0.03479
GO:0016020 membrane 12.61% (14/111) 1.07 0.0069 0.035735
GO:0008194 UDP-glycosyltransferase activity 3.6% (4/111) 2.43 0.006866 0.035878
GO:0005774 vacuolar membrane 1.8% (2/111) 3.99 0.007194 0.036283
GO:0046486 glycerolipid metabolic process 2.7% (3/111) 2.95 0.007179 0.036524
GO:0000145 exocyst 1.8% (2/111) 4.0 0.007133 0.036613
GO:0004609 phosphatidylserine decarboxylase activity 0.9% (1/111) 6.91 0.008279 0.036936
GO:0009233 menaquinone metabolic process 0.9% (1/111) 6.91 0.008279 0.036936
GO:0009234 menaquinone biosynthetic process 0.9% (1/111) 6.91 0.008279 0.036936
GO:0008614 pyridoxine metabolic process 0.9% (1/111) 6.94 0.008095 0.037265
GO:0051219 phosphoprotein binding 0.9% (1/111) 6.94 0.008095 0.037265
GO:0045309 protein phosphorylated amino acid binding 0.9% (1/111) 6.94 0.008095 0.037265
GO:0034066 Ric1-Rgp1 guanyl-nucleotide exchange factor complex 0.9% (1/111) 6.98 0.007912 0.03731
GO:1990269 RNA polymerase II C-terminal domain phosphoserine binding 0.9% (1/111) 6.98 0.007912 0.03731
GO:0050815 phosphoserine residue binding 0.9% (1/111) 6.98 0.007912 0.03731
GO:0099122 RNA polymerase II C-terminal domain binding 0.9% (1/111) 6.98 0.007912 0.03731
GO:0035658 Mon1-Ccz1 complex 0.9% (1/111) 7.04 0.007546 0.037406
GO:0030904 retromer complex 0.9% (1/111) 7.04 0.007546 0.037406
GO:0006887 exocytosis 1.8% (2/111) 3.89 0.008242 0.037642
GO:0019692 deoxyribose phosphate metabolic process 0.9% (1/111) 7.01 0.007729 0.03767
GO:0009394 2'-deoxyribonucleotide metabolic process 0.9% (1/111) 7.01 0.007729 0.03767
GO:0035251 UDP-glucosyltransferase activity 2.7% (3/111) 2.86 0.008519 0.037719
GO:0044877 protein-containing complex binding 3.6% (4/111) 2.3 0.009287 0.040502
GO:0016051 carbohydrate biosynthetic process 2.7% (3/111) 2.81 0.009257 0.040675
GO:0030120 vesicle coat 1.8% (2/111) 3.75 0.009982 0.042884
GO:0046654 tetrahydrofolate biosynthetic process 0.9% (1/111) 6.65 0.009926 0.042965
GO:0065008 regulation of biological quality 2.7% (3/111) 2.76 0.010167 0.043361
GO:0042023 DNA endoreduplication 0.9% (1/111) 6.6 0.010292 0.043572
GO:0032940 secretion by cell 1.8% (2/111) 3.65 0.011265 0.045373
GO:0044283 small molecule biosynthetic process 3.6% (4/111) 2.23 0.010875 0.045379
GO:0043102 amino acid salvage 0.9% (1/111) 6.47 0.011206 0.04545
GO:0019509 L-methionine salvage from methylthioadenosine 0.9% (1/111) 6.47 0.011206 0.04545
GO:0071267 L-methionine salvage 0.9% (1/111) 6.47 0.011206 0.04545
GO:1901576 organic substance biosynthetic process 8.11% (9/111) 1.31 0.010981 0.045491
GO:0016757 glycosyltransferase activity 4.5% (5/111) 1.92 0.010857 0.045632
GO:0071265 L-methionine biosynthetic process 0.9% (1/111) 6.43 0.011571 0.045968
GO:0032012 regulation of ARF protein signal transduction 0.9% (1/111) 6.43 0.011571 0.045968
GO:0016197 endosomal transport 1.8% (2/111) 3.62 0.011818 0.046629
GO:0046903 secretion 1.8% (2/111) 3.6 0.012099 0.047415
GO:0009129 pyrimidine nucleoside monophosphate metabolic process 0.9% (1/111) 6.34 0.012301 0.047565
GO:0009130 pyrimidine nucleoside monophosphate biosynthetic process 0.9% (1/111) 6.34 0.012301 0.047565
GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening 0.9% (1/111) 6.31 0.012484 0.047951
GO:0010119 regulation of stomatal movement 0.9% (1/111) 6.23 0.013213 0.048504
GO:0009330 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex 0.9% (1/111) 6.23 0.013213 0.048504
GO:0055035 plastid thylakoid membrane 1.8% (2/111) 3.54 0.013065 0.048576
GO:0009535 chloroplast thylakoid membrane 1.8% (2/111) 3.54 0.013065 0.048576
GO:0042816 vitamin B6 metabolic process 0.9% (1/111) 6.27 0.012849 0.048707
GO:0042819 vitamin B6 biosynthetic process 0.9% (1/111) 6.27 0.012849 0.048707
GO:0003824 catalytic activity 27.03% (30/111) 0.58 0.01297 0.048847
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (111) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms