Coexpression cluster: Cluster_129 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016491 oxidoreductase activity 16.48% (43/261) 2.56 0.0 0.0
GO:0046914 transition metal ion binding 13.41% (35/261) 2.67 0.0 0.0
GO:0004760 serine-pyruvate transaminase activity 2.68% (7/261) 8.89 0.0 0.0
GO:0019265 glycine biosynthetic process, by transamination of glyoxylate 2.68% (7/261) 8.89 0.0 0.0
GO:1901700 response to oxygen-containing compound 5.36% (14/261) 5.09 0.0 0.0
GO:0005777 peroxisome 4.98% (13/261) 5.19 0.0 0.0
GO:0010035 response to inorganic substance 4.6% (12/261) 5.46 0.0 0.0
GO:0046872 metal ion binding 14.56% (38/261) 2.25 0.0 0.0
GO:0043169 cation binding 14.56% (38/261) 2.21 0.0 0.0
GO:0042579 microbody 4.98% (13/261) 4.67 0.0 0.0
GO:0008453 alanine-glyoxylate transaminase activity 2.68% (7/261) 7.45 0.0 0.0
GO:0020037 heme binding 8.05% (21/261) 3.2 0.0 0.0
GO:0046906 tetrapyrrole binding 8.05% (21/261) 3.19 0.0 0.0
GO:0006545 glycine biosynthetic process 2.68% (7/261) 6.93 0.0 0.0
GO:0008131 primary amine oxidase activity 2.68% (7/261) 6.9 0.0 0.0
GO:0042221 response to chemical 6.13% (16/261) 3.65 0.0 0.0
GO:0004096 catalase activity 2.3% (6/261) 7.73 0.0 0.0
GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor 2.68% (7/261) 6.71 0.0 0.0
GO:0006544 glycine metabolic process 2.68% (7/261) 6.59 0.0 0.0
GO:0005507 copper ion binding 3.83% (10/261) 4.99 0.0 0.0
GO:0048038 quinone binding 2.68% (7/261) 6.41 0.0 0.0
GO:0042542 response to hydrogen peroxide 2.3% (6/261) 6.91 0.0 0.0
GO:0003674 molecular_function 55.17% (144/261) 0.64 0.0 0.0
GO:0003824 catalytic activity 34.87% (91/261) 0.95 0.0 0.0
GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors 2.68% (7/261) 5.65 0.0 0.0
GO:0005506 iron ion binding 6.13% (16/261) 3.0 0.0 0.0
GO:0010033 response to organic substance 4.6% (12/261) 3.6 0.0 0.0
GO:0009070 serine family amino acid biosynthetic process 2.68% (7/261) 5.11 0.0 0.0
GO:0000302 response to reactive oxygen species 2.3% (6/261) 5.75 0.0 0.0
GO:0004497 monooxygenase activity 5.75% (15/261) 2.93 0.0 0.0
GO:1902074 response to salt 2.3% (6/261) 5.65 0.0 0.0
GO:0009069 serine family amino acid metabolic process 2.68% (7/261) 4.87 0.0 0.0
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen 5.75% (15/261) 2.78 0.0 0.0
GO:0008483 transaminase activity 2.68% (7/261) 4.76 0.0 0.0
GO:0016769 transferase activity, transferring nitrogenous groups 2.68% (7/261) 4.76 0.0 0.0
GO:0009909 regulation of flower development 1.92% (5/261) 6.03 0.0 0.0
GO:0048831 regulation of shoot system development 1.92% (5/261) 6.03 0.0 0.0
GO:0003700 DNA-binding transcription factor activity 6.9% (18/261) 2.36 0.0 0.0
GO:0042744 hydrogen peroxide catabolic process 2.3% (6/261) 4.86 0.0 1e-06
GO:0042743 hydrogen peroxide metabolic process 2.3% (6/261) 4.86 0.0 1e-06
GO:2000026 regulation of multicellular organismal development 1.92% (5/261) 5.6 0.0 1e-06
GO:0048580 regulation of post-embryonic development 1.92% (5/261) 5.61 0.0 1e-06
GO:0009308 amine metabolic process 2.68% (7/261) 4.31 0.0 1e-06
GO:0043167 ion binding 21.07% (55/261) 1.03 0.0 2e-06
GO:0072593 reactive oxygen species metabolic process 2.3% (6/261) 4.6 0.0 3e-06
GO:0005488 binding 36.4% (95/261) 0.69 0.0 3e-06
GO:0140110 transcription regulator activity 6.9% (18/261) 2.11 0.0 3e-06
GO:0051239 regulation of multicellular organismal process 1.92% (5/261) 5.18 0.0 3e-06
GO:0097159 organic cyclic compound binding 26.05% (68/261) 0.86 1e-06 5e-06
GO:2000241 regulation of reproductive process 1.92% (5/261) 4.89 1e-06 9e-06
GO:0003677 DNA binding 9.2% (24/261) 1.64 1e-06 1e-05
GO:2001141 regulation of RNA biosynthetic process 8.05% (21/261) 1.78 1e-06 1.1e-05
GO:0006355 regulation of DNA-templated transcription 8.05% (21/261) 1.78 1e-06 1.1e-05
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding 2.68% (7/261) 3.62 2e-06 1.9e-05
GO:0051252 regulation of RNA metabolic process 8.05% (21/261) 1.71 3e-06 2.2e-05
GO:0000987 cis-regulatory region sequence-specific DNA binding 2.68% (7/261) 3.53 3e-06 2.7e-05
GO:0050789 regulation of biological process 12.64% (33/261) 1.26 4e-06 3.2e-05
GO:0019219 regulation of nucleobase-containing compound metabolic process 8.05% (21/261) 1.66 5e-06 3.9e-05
GO:0006979 response to oxidative stress 2.68% (7/261) 3.41 6e-06 4.4e-05
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific 2.68% (7/261) 3.39 6e-06 4.8e-05
GO:1901607 alpha-amino acid biosynthetic process 2.68% (7/261) 3.38 6e-06 4.8e-05
GO:0050793 regulation of developmental process 1.92% (5/261) 4.26 8e-06 5.9e-05
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding 2.68% (7/261) 3.3 9e-06 6.8e-05
GO:0009414 response to water deprivation 1.15% (3/261) 6.26 9e-06 6.8e-05
GO:0009415 response to water 1.15% (3/261) 6.25 1e-05 6.9e-05
GO:0008652 amino acid biosynthetic process 2.68% (7/261) 3.27 1e-05 7.3e-05
GO:0010167 response to nitrate 1.15% (3/261) 6.03 1.5e-05 0.000104
GO:1901605 alpha-amino acid metabolic process 3.07% (8/261) 2.9 1.5e-05 0.000105
GO:0065007 biological regulation 12.64% (33/261) 1.15 1.7e-05 0.000113
GO:0043565 sequence-specific DNA binding 4.6% (12/261) 2.19 1.8e-05 0.000119
GO:0010468 regulation of gene expression 8.43% (22/261) 1.45 2.5e-05 0.000165
GO:0015112 nitrate transmembrane transporter activity 1.15% (3/261) 5.77 2.6e-05 0.000169
GO:0010556 regulation of macromolecule biosynthetic process 8.43% (22/261) 1.44 2.8e-05 0.000178
GO:0004601 peroxidase activity 2.3% (6/261) 3.39 2.9e-05 0.000179
GO:0016684 oxidoreductase activity, acting on peroxide as acceptor 2.3% (6/261) 3.39 2.9e-05 0.000179
GO:0051171 regulation of nitrogen compound metabolic process 8.05% (21/261) 1.48 3e-05 0.000184
GO:0000976 transcription cis-regulatory region binding 3.07% (8/261) 2.75 3.2e-05 0.000195
GO:0001067 transcription regulatory region nucleic acid binding 3.07% (8/261) 2.75 3.2e-05 0.000195
GO:0080090 regulation of primary metabolic process 8.05% (21/261) 1.46 3.4e-05 0.000203
GO:0009889 regulation of biosynthetic process 8.43% (22/261) 1.41 3.6e-05 0.00021
GO:0031326 regulation of cellular biosynthetic process 8.43% (22/261) 1.41 3.6e-05 0.000211
GO:0008113 peptide-methionine (S)-S-oxide reductase activity 0.77% (2/261) 7.78 3.9e-05 0.000224
GO:0004364 glutathione transferase activity 1.92% (5/261) 3.75 4.2e-05 0.000238
GO:1990837 sequence-specific double-stranded DNA binding 3.07% (8/261) 2.64 5.5e-05 0.000305
GO:0045550 geranylgeranyl reductase activity 0.77% (2/261) 7.53 5.6e-05 0.000309
GO:0016209 antioxidant activity 2.3% (6/261) 3.18 6.3e-05 0.000342
GO:0035251 UDP-glucosyltransferase activity 2.68% (7/261) 2.85 6.6e-05 0.000355
GO:0008194 UDP-glycosyltransferase activity 3.45% (9/261) 2.36 8.1e-05 0.000433
GO:0001101 response to acid chemical 1.15% (3/261) 5.15 9.1e-05 0.000481
GO:0060255 regulation of macromolecule metabolic process 8.43% (22/261) 1.31 0.000103 0.000539
GO:0031323 regulation of cellular metabolic process 8.43% (22/261) 1.3 0.000113 0.00058
GO:0005372 water transmembrane transporter activity 1.15% (3/261) 4.93 0.000145 0.000731
GO:0015250 water channel activity 1.15% (3/261) 4.93 0.000145 0.000731
GO:0050794 regulation of cellular process 10.73% (28/261) 1.09 0.000158 0.000786
GO:0019222 regulation of metabolic process 8.43% (22/261) 1.25 0.000175 0.000865
GO:0043231 intracellular membrane-bounded organelle 13.41% (35/261) 0.94 0.000186 0.000909
GO:0043227 membrane-bounded organelle 13.41% (35/261) 0.92 0.000214 0.001036
GO:0046527 glucosyltransferase activity 2.68% (7/261) 2.56 0.000217 0.001039
GO:0006520 amino acid metabolic process 3.45% (9/261) 2.16 0.000228 0.001079
GO:0016053 organic acid biosynthetic process 2.68% (7/261) 2.36 0.000499 0.002295
GO:0046394 carboxylic acid biosynthetic process 2.68% (7/261) 2.36 0.000499 0.002295
GO:1901566 organonitrogen compound biosynthetic process 4.21% (11/261) 1.76 0.000495 0.002322
GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor 0.77% (2/261) 5.69 0.000718 0.003268
GO:0043226 organelle 14.18% (37/261) 0.8 0.000738 0.003297
GO:0043229 intracellular organelle 14.18% (37/261) 0.8 0.000737 0.003323
GO:0003690 double-stranded DNA binding 3.07% (8/261) 2.06 0.000787 0.003356
GO:0009535 chloroplast thylakoid membrane 1.53% (4/261) 3.31 0.000786 0.003382
GO:0055035 plastid thylakoid membrane 1.53% (4/261) 3.31 0.000786 0.003382
GO:0005886 plasma membrane 5.36% (14/261) 1.45 0.000774 0.003424
GO:0009739 response to gibberellin 0.77% (2/261) 5.63 0.000783 0.003433
GO:0010478 chlororespiration 0.38% (1/261) 10.17 0.000868 0.003669
GO:0015995 chlorophyll biosynthetic process 0.77% (2/261) 5.5 0.000941 0.003939
GO:0044283 small molecule biosynthetic process 3.07% (8/261) 2.0 0.001044 0.004334
GO:0034357 photosynthetic membrane 1.53% (4/261) 3.19 0.001069 0.004358
GO:0042651 thylakoid membrane 1.53% (4/261) 3.19 0.001069 0.004358
GO:0006749 glutathione metabolic process 1.53% (4/261) 3.18 0.00108 0.004367
GO:0015267 channel activity 1.92% (5/261) 2.69 0.001202 0.004777
GO:0022803 passive transmembrane transporter activity 1.92% (5/261) 2.69 0.001202 0.004777
GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups 1.92% (5/261) 2.68 0.001244 0.004902
GO:1901702 salt transmembrane transporter activity 2.3% (6/261) 2.3 0.001571 0.006091
GO:0008150 biological_process 36.4% (95/261) 0.39 0.001563 0.006109
GO:0015103 inorganic anion transmembrane transporter activity 1.15% (3/261) 3.73 0.00159 0.006114
GO:0016667 oxidoreductase activity, acting on a sulfur group of donors 1.15% (3/261) 3.66 0.001855 0.007075
GO:0006357 regulation of transcription by RNA polymerase II 2.68% (7/261) 2.02 0.00197 0.00745
GO:0016740 transferase activity 13.03% (34/261) 0.75 0.00212 0.007955
GO:0009751 response to salicylic acid 0.38% (1/261) 8.85 0.00217 0.008013
GO:0014070 response to organic cyclic compound 0.38% (1/261) 8.85 0.00217 0.008013
GO:0003676 nucleic acid binding 11.49% (30/261) 0.81 0.002197 0.008048
GO:0005737 cytoplasm 6.9% (18/261) 1.1 0.002249 0.008178
GO:0003755 peptidyl-prolyl cis-trans isomerase activity 1.15% (3/261) 3.52 0.002419 0.008727
GO:0015318 inorganic molecular entity transmembrane transporter activity 2.68% (7/261) 1.92 0.002857 0.01023
GO:0008270 zinc ion binding 3.45% (9/261) 1.58 0.003618 0.012853
GO:0042170 plastid membrane 1.53% (4/261) 2.7 0.003648 0.012864
GO:0016859 cis-trans isomerase activity 1.15% (3/261) 3.25 0.004051 0.01418
GO:0097272 ammonium homeostasis 0.38% (1/261) 7.85 0.004335 0.015059
GO:0016757 glycosyltransferase activity 3.45% (9/261) 1.53 0.004485 0.015465
GO:0016758 hexosyltransferase activity 2.68% (7/261) 1.78 0.004737 0.016218
GO:0031968 organelle outer membrane 1.53% (4/261) 2.58 0.004869 0.016547
GO:0015994 chlorophyll metabolic process 0.77% (2/261) 4.28 0.004913 0.016578
GO:0110165 cellular anatomical entity 24.14% (63/261) 0.45 0.005122 0.017036
GO:0033993 response to lipid 0.77% (2/261) 4.25 0.005116 0.017139
GO:0009882 blue light photoreceptor activity 0.38% (1/261) 7.58 0.0052 0.017173
GO:0019752 carboxylic acid metabolic process 3.83% (10/261) 1.4 0.005403 0.017719
GO:0006082 organic acid metabolic process 3.83% (10/261) 1.39 0.005538 0.017911
GO:0043436 oxoacid metabolic process 3.83% (10/261) 1.39 0.005508 0.017939
GO:0036456 L-methionine-(S)-S-oxide reductase activity 0.38% (1/261) 7.47 0.005632 0.017968
GO:0033744 L-methionine:thioredoxin-disulfide S-oxidoreductase activity 0.38% (1/261) 7.47 0.005632 0.017968
GO:0019867 outer membrane 1.53% (4/261) 2.51 0.005766 0.018272
GO:1901698 response to nitrogen compound 1.15% (3/261) 3.07 0.005809 0.018284
GO:0044248 cellular catabolic process 3.07% (8/261) 1.59 0.005862 0.018328
GO:1901564 organonitrogen compound metabolic process 13.03% (34/261) 0.65 0.00605 0.01879
GO:0009881 photoreceptor activity 0.38% (1/261) 7.17 0.006927 0.021233
GO:0003868 4-hydroxyphenylpyruvate dioxygenase activity 0.38% (1/261) 7.17 0.006927 0.021233
GO:0071483 cellular response to blue light 0.38% (1/261) 6.85 0.008651 0.025843
GO:0030522 intracellular receptor signaling pathway 0.38% (1/261) 6.85 0.008651 0.025843
GO:0009785 blue light signaling pathway 0.38% (1/261) 6.85 0.008651 0.025843
GO:0000413 protein peptidyl-prolyl isomerization 0.77% (2/261) 3.87 0.00855 0.026038
GO:0009628 response to abiotic stimulus 1.53% (4/261) 2.32 0.009016 0.026763
GO:0006779 porphyrin-containing compound biosynthetic process 0.77% (2/261) 3.76 0.009833 0.029004
GO:0009506 plasmodesma 1.15% (3/261) 2.75 0.010575 0.030999
GO:0005911 cell-cell junction 1.15% (3/261) 2.74 0.010713 0.031209
GO:0070161 anchoring junction 1.15% (3/261) 2.73 0.010881 0.0315
GO:0010223 secondary shoot formation 0.38% (1/261) 6.47 0.011232 0.031543
GO:1905393 plant organ formation 0.38% (1/261) 6.47 0.011232 0.031543
GO:0010346 shoot axis formation 0.38% (1/261) 6.47 0.011232 0.031543
GO:0008615 pyridoxine biosynthetic process 0.38% (1/261) 6.47 0.011232 0.031543
GO:0030054 cell junction 1.15% (3/261) 2.72 0.011134 0.032036
GO:0009725 response to hormone 1.15% (3/261) 2.64 0.012974 0.036004
GO:0008152 metabolic process 21.46% (56/261) 0.42 0.012918 0.036064
GO:0018208 peptidyl-proline modification 0.77% (2/261) 3.54 0.013134 0.036234
GO:0046148 pigment biosynthetic process 0.77% (2/261) 3.52 0.013512 0.03706
GO:0048646 anatomical structure formation involved in morphogenesis 0.38% (1/261) 6.12 0.014234 0.038588
GO:0010598 NAD(P)H dehydrogenase complex (plastoquinone) 0.38% (1/261) 6.12 0.014234 0.038588
GO:0001763 morphogenesis of a branching structure 0.38% (1/261) 6.08 0.014662 0.03952
GO:0033014 tetrapyrrole biosynthetic process 0.77% (2/261) 3.44 0.01494 0.04004
GO:0005773 vacuole 1.15% (3/261) 2.54 0.015452 0.041176
GO:0046274 lignin catabolic process 0.38% (1/261) 5.92 0.016373 0.04314
GO:0052716 hydroquinone:oxygen oxidoreductase activity 0.38% (1/261) 5.92 0.016373 0.04314
GO:1901601 strigolactone biosynthetic process 0.38% (1/261) 5.88 0.0168 0.043532
GO:0046271 phenylpropanoid catabolic process 0.38% (1/261) 5.88 0.0168 0.043532
GO:1901600 strigolactone metabolic process 0.38% (1/261) 5.88 0.0168 0.043532
GO:0015979 photosynthesis 0.77% (2/261) 3.33 0.017269 0.0445
GO:0009719 response to endogenous stimulus 1.15% (3/261) 2.47 0.017547 0.044969
GO:0071704 organic substance metabolic process 20.31% (53/261) 0.41 0.017702 0.045121
GO:0080044 quercetin 7-O-glucosyltransferase activity 0.77% (2/261) 3.29 0.018125 0.045702
GO:0080043 quercetin 3-O-glucosyltransferase activity 0.77% (2/261) 3.29 0.018125 0.045702
GO:0008614 pyridoxine metabolic process 0.38% (1/261) 5.71 0.018934 0.047486
GO:0009637 response to blue light 0.38% (1/261) 5.68 0.01936 0.048296
GO:1901336 lactone biosynthetic process 0.38% (1/261) 5.65 0.019786 0.049098
GO:0006778 porphyrin-containing compound metabolic process 0.77% (2/261) 3.21 0.02004 0.049468
GO:0016106 sesquiterpenoid biosynthetic process 0.38% (1/261) 5.61 0.020212 0.049629
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (261) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms