Coexpression cluster: Cluster_711 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0004450 isocitrate dehydrogenase (NADP+) activity 3.54% (4/113) 8.88 0.0 0.0
GO:1902652 secondary alcohol metabolic process 3.54% (4/113) 8.21 0.0 0.0
GO:0006102 isocitrate metabolic process 3.54% (4/113) 8.29 0.0 0.0
GO:0004448 isocitrate dehydrogenase [NAD(P)+] activity 3.54% (4/113) 8.29 0.0 0.0
GO:0032991 protein-containing complex 20.35% (23/113) 2.14 0.0 0.0
GO:1901615 organic hydroxy compound metabolic process 7.08% (8/113) 4.25 0.0 1e-06
GO:0072350 tricarboxylic acid metabolic process 3.54% (4/113) 6.82 0.0 4e-06
GO:0044391 ribosomal subunit 5.31% (6/113) 4.6 0.0 1.4e-05
GO:0006739 NADP metabolic process 3.54% (4/113) 6.28 0.0 1.4e-05
GO:0005840 ribosome 5.31% (6/113) 4.42 0.0 2.3e-05
GO:1901999 homogentisate metabolic process 1.77% (2/113) 10.21 1e-06 4.5e-05
GO:1902000 homogentisate catabolic process 1.77% (2/113) 10.21 1e-06 4.5e-05
GO:0019336 phenol-containing compound catabolic process 1.77% (2/113) 10.05 2e-06 4.6e-05
GO:0004334 fumarylacetoacetase activity 1.77% (2/113) 10.05 2e-06 4.6e-05
GO:0005198 structural molecule activity 6.19% (7/113) 3.7 1e-06 4.6e-05
GO:0003735 structural constituent of ribosome 5.31% (6/113) 4.19 1e-06 5.2e-05
GO:0043604 amide biosynthetic process 6.19% (7/113) 3.72 1e-06 5.2e-05
GO:0006412 translation 5.31% (6/113) 4.02 2e-06 6.4e-05
GO:0030008 TRAPP complex 2.65% (3/113) 6.88 3e-06 6.7e-05
GO:0030906 retromer, cargo-selective complex 1.77% (2/113) 9.57 3e-06 7.9e-05
GO:0043043 peptide biosynthetic process 5.31% (6/113) 3.89 4e-06 9e-05
GO:0000028 ribosomal small subunit assembly 2.65% (3/113) 6.6 5e-06 0.000103
GO:0043603 amide metabolic process 6.19% (7/113) 3.3 8e-06 0.000181
GO:0140535 intracellular protein-containing complex 7.08% (8/113) 2.98 9e-06 0.00019
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 5.31% (6/113) 3.65 1e-05 0.000192
GO:0006518 peptide metabolic process 5.31% (6/113) 3.64 1e-05 0.000198
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors 5.31% (6/113) 3.52 1.6e-05 0.000299
GO:0030904 retromer complex 1.77% (2/113) 8.02 2.9e-05 0.000508
GO:1901564 organonitrogen compound metabolic process 20.35% (23/113) 1.3 4.8e-05 0.000687
GO:0016822 hydrolase activity, acting on acid carbon-carbon bonds 1.77% (2/113) 7.65 4.8e-05 0.000702
GO:0016823 hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances 1.77% (2/113) 7.65 4.8e-05 0.000702
GO:0006082 organic acid metabolic process 7.96% (9/113) 2.45 4.6e-05 0.000716
GO:0043436 oxoacid metabolic process 7.96% (9/113) 2.45 4.6e-05 0.000734
GO:0005575 cellular_component 36.28% (41/113) 0.86 4.3e-05 0.000735
GO:0019752 carboxylic acid metabolic process 7.96% (9/113) 2.45 4.5e-05 0.000742
GO:0022627 cytosolic small ribosomal subunit 2.65% (3/113) 5.35 6e-05 0.000768
GO:1990904 ribonucleoprotein complex 6.19% (7/113) 2.85 6e-05 0.000785
GO:0006066 alcohol metabolic process 3.54% (4/113) 4.26 6.4e-05 0.000792
GO:0019632 shikimate metabolic process 1.77% (2/113) 7.49 6e-05 0.0008
GO:0004764 shikimate 3-dehydrogenase (NADP+) activity 1.77% (2/113) 7.49 6e-05 0.0008
GO:1990072 TRAPPIII protein complex 1.77% (2/113) 7.33 7.5e-05 0.000904
GO:0009423 chorismate biosynthetic process 1.77% (2/113) 7.09 0.000104 0.001234
GO:0019843 rRNA binding 2.65% (3/113) 5.0 0.000123 0.001422
GO:0015935 small ribosomal subunit 2.65% (3/113) 4.93 0.000144 0.001587
GO:0051641 cellular localization 7.08% (8/113) 2.42 0.000141 0.001595
GO:0098796 membrane protein complex 5.31% (6/113) 2.93 0.000155 0.001676
GO:0019362 pyridine nucleotide metabolic process 3.54% (4/113) 3.88 0.000176 0.001784
GO:0046496 nicotinamide nucleotide metabolic process 3.54% (4/113) 3.88 0.000173 0.001793
GO:0046417 chorismate metabolic process 1.77% (2/113) 6.73 0.000171 0.001812
GO:0005739 mitochondrion 5.31% (6/113) 2.86 0.000201 0.001999
GO:0072524 pyridine-containing compound metabolic process 3.54% (4/113) 3.81 0.00021 0.00205
GO:0006163 purine nucleotide metabolic process 4.42% (5/113) 3.17 0.000256 0.002446
GO:0022625 cytosolic large ribosomal subunit 2.65% (3/113) 4.62 0.000269 0.002473
GO:0006572 tyrosine catabolic process 1.77% (2/113) 6.41 0.000268 0.002509
GO:0006559 L-phenylalanine catabolic process 1.77% (2/113) 6.3 0.000312 0.002768
GO:1902222 erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process 1.77% (2/113) 6.3 0.000312 0.002768
GO:0090630 activation of GTPase activity 1.77% (2/113) 6.28 0.000321 0.0028
GO:0072521 purine-containing compound metabolic process 4.42% (5/113) 3.08 0.00034 0.00291
GO:0006807 nitrogen compound metabolic process 23.89% (27/113) 0.99 0.000359 0.003028
GO:1901616 organic hydroxy compound catabolic process 1.77% (2/113) 6.17 0.000374 0.003102
GO:0006558 L-phenylalanine metabolic process 1.77% (2/113) 5.97 0.000493 0.00389
GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process 1.77% (2/113) 5.97 0.000493 0.00389
GO:0015934 large ribosomal subunit 2.65% (3/113) 4.33 0.000478 0.003891
GO:0006570 tyrosine metabolic process 1.77% (2/113) 5.93 0.000516 0.003949
GO:0018958 phenol-containing compound metabolic process 1.77% (2/113) 5.93 0.000516 0.003949
GO:0009117 nucleotide metabolic process 4.42% (5/113) 2.92 0.000562 0.004166
GO:0043228 non-membrane-bounded organelle 6.19% (7/113) 2.31 0.000578 0.004166
GO:0006753 nucleoside phosphate metabolic process 4.42% (5/113) 2.91 0.000588 0.004174
GO:1901566 organonitrogen compound biosynthetic process 6.19% (7/113) 2.32 0.000559 0.004208
GO:0043232 intracellular non-membrane-bounded organelle 6.19% (7/113) 2.31 0.000578 0.004224
GO:0009059 macromolecule biosynthetic process 6.19% (7/113) 2.29 0.000615 0.004248
GO:0032787 monocarboxylic acid metabolic process 4.42% (5/113) 2.89 0.000613 0.00429
GO:0071704 organic substance metabolic process 27.43% (31/113) 0.84 0.000662 0.004504
GO:0046907 intracellular transport 5.31% (6/113) 2.51 0.000697 0.00468
GO:0043226 organelle 17.7% (20/113) 1.12 0.000794 0.005193
GO:0051603 proteolysis involved in protein catabolic process 4.42% (5/113) 2.8 0.000812 0.005241
GO:0043229 intracellular organelle 17.7% (20/113) 1.12 0.000793 0.005255
GO:0051649 establishment of localization in cell 5.31% (6/113) 2.47 0.00083 0.005288
GO:0043547 positive regulation of GTPase activity 1.77% (2/113) 5.54 0.000882 0.005549
GO:0051345 positive regulation of hydrolase activity 1.77% (2/113) 5.47 0.000976 0.006064
GO:0034641 cellular nitrogen compound metabolic process 13.27% (15/113) 1.31 0.001036 0.006358
GO:0055086 nucleobase-containing small molecule metabolic process 4.42% (5/113) 2.7 0.001128 0.006594
GO:0044238 primary metabolic process 25.66% (29/113) 0.83 0.001151 0.006654
GO:0042537 benzene-containing compound metabolic process 1.77% (2/113) 5.38 0.0011 0.006668
GO:0010387 COP9 signalosome assembly 0.88% (1/113) 9.79 0.001128 0.006672
GO:0008150 biological_process 41.59% (47/113) 0.58 0.001123 0.006727
GO:0043650 dicarboxylic acid biosynthetic process 1.77% (2/113) 5.3 0.001231 0.007035
GO:0043087 regulation of GTPase activity 1.77% (2/113) 5.25 0.001314 0.007419
GO:0031624 ubiquitin conjugating enzyme binding 1.77% (2/113) 5.2 0.001408 0.007862
GO:0008152 metabolic process 27.43% (31/113) 0.77 0.001481 0.008089
GO:0022618 protein-RNA complex assembly 2.65% (3/113) 3.77 0.001473 0.008135
GO:0005770 late endosome 1.77% (2/113) 5.14 0.001525 0.00824
GO:0042147 retrograde transport, endosome to Golgi 1.77% (2/113) 5.12 0.001565 0.008277
GO:0044281 small molecule metabolic process 7.96% (9/113) 1.75 0.001564 0.008359
GO:0071826 protein-RNA complex organization 2.65% (3/113) 3.72 0.001605 0.008399
GO:0099023 vesicle tethering complex 2.65% (3/113) 3.7 0.001686 0.008728
GO:0060589 nucleoside-triphosphatase regulator activity 2.65% (3/113) 3.68 0.001749 0.00887
GO:0030695 GTPase regulator activity 2.65% (3/113) 3.68 0.001749 0.00887
GO:2000060 positive regulation of ubiquitin-dependent protein catabolic process 1.77% (2/113) 5.02 0.001806 0.008885
GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process 1.77% (2/113) 5.02 0.001806 0.008885
GO:0044271 cellular nitrogen compound biosynthetic process 6.19% (7/113) 2.03 0.001784 0.008955
GO:0006511 ubiquitin-dependent protein catabolic process 3.54% (4/113) 2.96 0.00185 0.009013
GO:0044390 ubiquitin-like protein conjugating enzyme binding 1.77% (2/113) 4.97 0.001926 0.009295
GO:0016482 cytosolic transport 1.77% (2/113) 4.91 0.002086 0.009966
GO:1901800 positive regulation of proteasomal protein catabolic process 1.77% (2/113) 4.88 0.002179 0.010028
GO:1903052 positive regulation of proteolysis involved in protein catabolic process 1.77% (2/113) 4.88 0.002179 0.010028
GO:0004842 ubiquitin-protein transferase activity 3.54% (4/113) 2.9 0.002152 0.010088
GO:0009074 aromatic amino acid family catabolic process 1.77% (2/113) 4.9 0.002132 0.010092
GO:0032434 regulation of proteasomal ubiquitin-dependent protein catabolic process 1.77% (2/113) 4.86 0.002251 0.010262
GO:0044249 cellular biosynthetic process 8.85% (10/113) 1.55 0.002277 0.010286
GO:0019787 ubiquitin-like protein transferase activity 3.54% (4/113) 2.85 0.002441 0.01093
GO:2000058 regulation of ubiquitin-dependent protein catabolic process 1.77% (2/113) 4.78 0.002509 0.011135
GO:0019941 modification-dependent protein catabolic process 3.54% (4/113) 2.82 0.002602 0.011342
GO:0016755 aminoacyltransferase activity 3.54% (4/113) 2.82 0.002651 0.01136
GO:0045862 positive regulation of proteolysis 1.77% (2/113) 4.73 0.002676 0.011369
GO:0051336 regulation of hydrolase activity 1.77% (2/113) 4.75 0.002586 0.011373
GO:0019538 protein metabolic process 14.16% (16/113) 1.13 0.002649 0.011449
GO:0045184 establishment of protein localization 4.42% (5/113) 2.4 0.002723 0.01147
GO:0043632 modification-dependent macromolecule catabolic process 3.54% (4/113) 2.76 0.003015 0.012594
GO:0061136 regulation of proteasomal protein catabolic process 1.77% (2/113) 4.63 0.003081 0.012655
GO:0045732 positive regulation of protein catabolic process 1.77% (2/113) 4.63 0.003067 0.012703
GO:1903050 regulation of proteolysis involved in protein catabolic process 1.77% (2/113) 4.56 0.00338 0.013658
GO:0043162 ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway 0.88% (1/113) 8.21 0.003379 0.013767
GO:0065003 protein-containing complex assembly 3.54% (4/113) 2.71 0.003446 0.013811
GO:0070647 protein modification by small protein conjugation or removal 4.42% (5/113) 2.31 0.003579 0.014006
GO:0009987 cellular process 29.2% (33/113) 0.66 0.003531 0.014038
GO:0000151 ubiquitin ligase complex 2.65% (3/113) 3.31 0.003578 0.014115
GO:0003729 mRNA binding 3.54% (4/113) 2.65 0.00397 0.015294
GO:0032777 piccolo histone acetyltransferase complex 0.88% (1/113) 7.98 0.003942 0.015304
GO:0030162 regulation of proteolysis 1.77% (2/113) 4.42 0.004065 0.015541
GO:1901576 organic substance biosynthetic process 8.85% (10/113) 1.43 0.004122 0.015638
GO:0070727 cellular macromolecule localization 4.42% (5/113) 2.24 0.004349 0.01613
GO:0033036 macromolecule localization 4.42% (5/113) 2.24 0.004385 0.016142
GO:0042176 regulation of protein catabolic process 1.77% (2/113) 4.37 0.004323 0.016154
GO:0008104 protein localization 4.42% (5/113) 2.25 0.004307 0.016217
GO:1990052 ER to chloroplast lipid transport 0.88% (1/113) 7.73 0.004691 0.016893
GO:0034196 acylglycerol transport 0.88% (1/113) 7.73 0.004691 0.016893
GO:1901965 endoplasmic reticulum to chloroplast transport 0.88% (1/113) 7.73 0.004691 0.016893
GO:0000839 Hrd1p ubiquitin ligase ERAD-L complex 0.88% (1/113) 7.62 0.005065 0.017603
GO:0000836 Hrd1p ubiquitin ligase complex 0.88% (1/113) 7.62 0.005065 0.017603
GO:0000835 ER ubiquitin ligase complex 0.88% (1/113) 7.62 0.005065 0.017603
GO:0002020 protease binding 0.88% (1/113) 7.62 0.005065 0.017603
GO:1990381 ubiquitin-specific protease binding 0.88% (1/113) 7.62 0.005065 0.017603
GO:0006508 proteolysis 5.31% (6/113) 1.91 0.005622 0.019403
GO:0009058 biosynthetic process 8.85% (10/113) 1.36 0.005885 0.020171
GO:0005785 signal recognition particle receptor complex 0.88% (1/113) 7.33 0.006187 0.021061
GO:0043085 positive regulation of catalytic activity 1.77% (2/113) 4.09 0.006351 0.021473
GO:0072329 monocarboxylic acid catabolic process 1.77% (2/113) 4.07 0.006488 0.021789
GO:0110165 cellular anatomical entity 27.43% (31/113) 0.63 0.006646 0.022168
GO:0019899 enzyme binding 2.65% (3/113) 2.95 0.007155 0.023708
GO:0044093 positive regulation of molecular function 1.77% (2/113) 3.98 0.007279 0.023957
GO:0016567 protein ubiquitination 3.54% (4/113) 2.4 0.007336 0.023987
GO:0003855 3-dehydroquinate dehydratase activity 0.88% (1/113) 7.02 0.007681 0.024951
GO:0009896 positive regulation of catabolic process 1.77% (2/113) 3.93 0.007828 0.025264
GO:0070300 phosphatidic acid binding 0.88% (1/113) 6.92 0.008241 0.026424
GO:0043687 post-translational protein modification 4.42% (5/113) 2.01 0.008439 0.026885
GO:0000338 protein deneddylation 0.88% (1/113) 6.85 0.008614 0.027268
GO:0032446 protein modification by small protein conjugation 3.54% (4/113) 2.32 0.008821 0.027746
GO:1901606 alpha-amino acid catabolic process 1.77% (2/113) 3.77 0.009609 0.029848
GO:0019637 organophosphate metabolic process 4.42% (5/113) 1.96 0.009678 0.029876
GO:0009072 aromatic amino acid metabolic process 1.77% (2/113) 3.78 0.009585 0.029962
GO:0000209 protein polyubiquitination 1.77% (2/113) 3.75 0.00987 0.03028
GO:0005096 GTPase activator activity 1.77% (2/113) 3.74 0.01011 0.030826
GO:0009063 amino acid catabolic process 1.77% (2/113) 3.68 0.010945 0.033168
GO:1902494 catalytic complex 5.31% (6/113) 1.69 0.011087 0.033194
GO:0008526 phosphatidylinositol transfer activity 0.88% (1/113) 6.49 0.011035 0.033238
GO:0004017 adenylate kinase activity 0.88% (1/113) 6.45 0.011407 0.033947
GO:0140534 endoplasmic reticulum protein-containing complex 1.77% (2/113) 3.62 0.011835 0.034805
GO:0032012 regulation of ARF protein signal transduction 0.88% (1/113) 6.4 0.011778 0.034845
GO:0016197 endosomal transport 1.77% (2/113) 3.59 0.012226 0.035744
GO:0043648 dicarboxylic acid metabolic process 1.77% (2/113) 3.58 0.01249 0.03609
GO:0016746 acyltransferase activity 4.42% (5/113) 1.87 0.012428 0.036121
GO:0051234 establishment of localization 8.85% (10/113) 1.19 0.01276 0.036658
GO:0003723 RNA binding 6.19% (7/113) 1.49 0.012834 0.036658
GO:0022607 cellular component assembly 3.54% (4/113) 2.14 0.013483 0.038074
GO:0051787 misfolded protein binding 0.88% (1/113) 6.21 0.01345 0.038197
GO:1901575 organic substance catabolic process 5.31% (6/113) 1.62 0.01391 0.039057
GO:0000153 cytoplasmic ubiquitin ligase complex 0.88% (1/113) 6.13 0.014192 0.039625
GO:0016192 vesicle-mediated transport 3.54% (4/113) 2.11 0.014303 0.039713
GO:0051247 positive regulation of protein metabolic process 1.77% (2/113) 3.44 0.01486 0.04103
GO:0008180 COP9 signalosome 0.88% (1/113) 5.97 0.015859 0.043547
GO:0051179 localization 8.85% (10/113) 1.14 0.016101 0.043728
GO:0000813 ESCRT I complex 0.88% (1/113) 5.95 0.016044 0.043813
GO:0051056 regulation of small GTPase mediated signal transduction 0.88% (1/113) 5.9 0.016599 0.044117
GO:0046578 regulation of Ras protein signal transduction 0.88% (1/113) 5.9 0.016599 0.044117
GO:0003676 nucleic acid binding 12.39% (14/113) 0.91 0.016468 0.044483
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport 1.77% (2/113) 3.36 0.016589 0.044565
GO:0006605 protein targeting 1.77% (2/113) 3.34 0.016981 0.04489
GO:0009056 catabolic process 5.31% (6/113) 1.55 0.01734 0.045598
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (113) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms