Coexpression cluster: Cluster_38 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0017022 myosin binding 4.53% (11/243) 7.53 0.0 0.0
GO:0000815 ESCRT III complex 2.06% (5/243) 6.98 0.0 0.0
GO:0005771 multivesicular body 2.06% (5/243) 6.54 0.0 1e-06
GO:0032012 regulation of ARF protein signal transduction 1.65% (4/243) 7.29 0.0 3e-06
GO:0016192 vesicle-mediated transport 5.76% (14/243) 2.81 0.0 3e-06
GO:0008092 cytoskeletal protein binding 4.94% (12/243) 3.05 0.0 4e-06
GO:0046578 regulation of Ras protein signal transduction 1.65% (4/243) 6.8 0.0 5e-06
GO:0051056 regulation of small GTPase mediated signal transduction 1.65% (4/243) 6.8 0.0 5e-06
GO:0036452 ESCRT complex 2.06% (5/243) 5.71 0.0 5e-06
GO:0005770 late endosome 2.06% (5/243) 5.36 0.0 1.2e-05
GO:0071985 multivesicular body sorting pathway 2.06% (5/243) 5.12 0.0 1.9e-05
GO:0032509 endosome transport via multivesicular body sorting pathway 2.06% (5/243) 5.12 0.0 1.9e-05
GO:0009252 peptidoglycan biosynthetic process 1.23% (3/243) 7.81 0.0 1.9e-05
GO:0008716 D-alanine-D-alanine ligase activity 1.23% (3/243) 7.81 0.0 1.9e-05
GO:0009898 cytoplasmic side of plasma membrane 1.23% (3/243) 7.65 1e-06 2e-05
GO:0098562 cytoplasmic side of membrane 1.23% (3/243) 7.65 1e-06 2e-05
GO:0000270 peptidoglycan metabolic process 1.23% (3/243) 7.77 0.0 2e-05
GO:0098552 side of membrane 1.23% (3/243) 7.61 1e-06 2e-05
GO:0044038 cell wall macromolecule biosynthetic process 1.23% (3/243) 7.37 1e-06 3.2e-05
GO:0045324 late endosome to vacuole transport 2.06% (5/243) 4.8 1e-06 4.1e-05
GO:0006024 glycosaminoglycan biosynthetic process 1.23% (3/243) 6.95 2e-06 6.6e-05
GO:0006023 aminoglycan biosynthetic process 1.23% (3/243) 6.95 2e-06 6.6e-05
GO:0004802 transketolase activity 1.23% (3/243) 6.9 2e-06 7e-05
GO:1902531 regulation of intracellular signal transduction 1.65% (4/243) 5.37 3e-06 9e-05
GO:0072318 clathrin coat disassembly 1.23% (3/243) 6.59 5e-06 0.000119
GO:0072319 vesicle uncoating 1.23% (3/243) 6.59 5e-06 0.000119
GO:0005737 cytoplasm 9.47% (23/243) 1.55 5e-06 0.000123
GO:0043562 cellular response to nitrogen levels 1.23% (3/243) 6.37 7e-06 0.000165
GO:0006995 cellular response to nitrogen starvation 1.23% (3/243) 6.37 7e-06 0.000165
GO:0031982 vesicle 3.29% (8/243) 3.05 7e-06 0.000171
GO:0007034 vacuolar transport 2.06% (5/243) 4.08 1.4e-05 0.000257
GO:0005515 protein binding 15.64% (38/243) 1.06 1.4e-05 0.00026
GO:0007154 cell communication 1.65% (4/243) 4.88 1.2e-05 0.000264
GO:0033962 P-body assembly 1.23% (3/243) 6.04 1.5e-05 0.000264
GO:0006098 pentose-phosphate shunt 1.23% (3/243) 6.1 1.3e-05 0.000267
GO:0140694 non-membrane-bounded organelle assembly 2.06% (5/243) 4.09 1.4e-05 0.000267
GO:0030203 glycosaminoglycan metabolic process 1.23% (3/243) 6.08 1.4e-05 0.000273
GO:0009057 macromolecule catabolic process 4.53% (11/243) 2.32 1.7e-05 0.000291
GO:0043231 intracellular membrane-bounded organelle 14.81% (36/243) 1.08 1.9e-05 0.000317
GO:0005085 guanyl-nucleotide exchange factor activity 1.65% (4/243) 4.68 2.1e-05 0.000351
GO:0043227 membrane-bounded organelle 14.81% (36/243) 1.07 2.2e-05 0.000354
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA 1.23% (3/243) 5.83 2.2e-05 0.000354
GO:0051641 cellular localization 5.35% (13/243) 2.01 2.7e-05 0.00042
GO:0016197 endosomal transport 2.06% (5/243) 3.81 3.4e-05 0.000514
GO:0043226 organelle 16.05% (39/243) 0.98 3.9e-05 0.00056
GO:0043229 intracellular organelle 16.05% (39/243) 0.98 3.9e-05 0.000571
GO:0003674 molecular_function 47.74% (116/243) 0.43 4.9e-05 0.000657
GO:0045184 establishment of protein localization 4.12% (10/243) 2.3 4.7e-05 0.00066
GO:1990498 mitotic spindle microtubule 0.82% (2/243) 7.63 4.9e-05 0.000669
GO:0016881 acid-amino acid ligase activity 1.65% (4/243) 4.34 5.3e-05 0.000696
GO:0006740 NADPH regeneration 1.23% (3/243) 5.41 5.4e-05 0.000706
GO:0016744 transketolase or transaldolase activity 1.23% (3/243) 5.3 6.7e-05 0.000856
GO:0070925 organelle assembly 2.06% (5/243) 3.57 7.5e-05 0.000933
GO:0006605 protein targeting 2.06% (5/243) 3.56 7.8e-05 0.000949
GO:0070647 protein modification by small protein conjugation or removal 4.12% (10/243) 2.21 8e-05 0.000957
GO:0051234 establishment of localization 9.47% (23/243) 1.29 8.8e-05 0.001043
GO:0033036 macromolecule localization 4.12% (10/243) 2.14 0.000118 0.00132
GO:0008104 protein localization 4.12% (10/243) 2.14 0.000114 0.00132
GO:0070727 cellular macromolecule localization 4.12% (10/243) 2.14 0.000116 0.001322
GO:0110156 methylguanosine-cap decapping 1.23% (3/243) 4.97 0.000133 0.00147
GO:0051179 localization 9.47% (23/243) 1.23 0.000151 0.001634
GO:0110154 RNA decapping 1.23% (3/243) 4.9 0.000154 0.001645
GO:0060589 nucleoside-triphosphatase regulator activity 2.06% (5/243) 3.31 0.00017 0.001757
GO:0030695 GTPase regulator activity 2.06% (5/243) 3.31 0.00017 0.001757
GO:0072583 clathrin-dependent endocytosis 1.23% (3/243) 4.83 0.000175 0.001781
GO:0006022 aminoglycan metabolic process 1.23% (3/243) 4.82 0.000181 0.001814
GO:0051261 protein depolymerization 1.23% (3/243) 4.79 0.000191 0.001888
GO:0006739 NADP metabolic process 1.23% (3/243) 4.76 0.000204 0.001985
GO:0030941 chloroplast targeting sequence binding 0.82% (2/243) 6.54 0.000221 0.002121
GO:0032511 late endosome to vacuole transport via multivesicular body sorting pathway 1.23% (3/243) 4.68 0.000239 0.002161
GO:0006897 endocytosis 1.65% (4/243) 3.77 0.000236 0.002164
GO:0141047 molecular tag activity 1.23% (3/243) 4.69 0.000234 0.002178
GO:0031386 protein tag activity 1.23% (3/243) 4.69 0.000234 0.002178
GO:0051156 glucose 6-phosphate metabolic process 1.23% (3/243) 4.66 0.000249 0.00219
GO:0033218 amide binding 1.65% (4/243) 3.76 0.000246 0.002195
GO:0019941 modification-dependent protein catabolic process 2.88% (7/243) 2.53 0.000253 0.002199
GO:0006900 vesicle budding from membrane 1.23% (3/243) 4.64 0.000261 0.002241
GO:0008150 biological_process 38.27% (93/243) 0.46 0.000265 0.00225
GO:0009966 regulation of signal transduction 1.65% (4/243) 3.67 0.000309 0.002587
GO:0023051 regulation of signaling 1.65% (4/243) 3.66 0.000318 0.002597
GO:0032472 Golgi calcium ion transport 0.82% (2/243) 6.21 0.000354 0.002599
GO:0006828 manganese ion transport 0.82% (2/243) 6.21 0.000354 0.002599
GO:0032468 Golgi calcium ion homeostasis 0.82% (2/243) 6.21 0.000354 0.002599
GO:0071421 manganese ion transmembrane transport 0.82% (2/243) 6.21 0.000354 0.002599
GO:0043632 modification-dependent macromolecule catabolic process 2.88% (7/243) 2.47 0.000324 0.002609
GO:0010646 regulation of cell communication 1.65% (4/243) 3.66 0.000317 0.002617
GO:0031668 cellular response to extracellular stimulus 1.23% (3/243) 4.5 0.000342 0.002631
GO:0009267 cellular response to starvation 1.23% (3/243) 4.51 0.000339 0.002638
GO:0031669 cellular response to nutrient levels 1.23% (3/243) 4.51 0.000339 0.002638
GO:0005768 endosome 2.06% (5/243) 3.1 0.000334 0.00266
GO:0071496 cellular response to external stimulus 1.23% (3/243) 4.46 0.000374 0.002714
GO:0006898 receptor-mediated endocytosis 1.23% (3/243) 4.44 0.00039 0.002802
GO:0042594 response to starvation 1.23% (3/243) 4.42 0.000407 0.002831
GO:0009875 pollen-pistil interaction 0.41% (1/243) 11.27 0.000404 0.002844
GO:0043687 post-translational protein modification 4.12% (10/243) 1.91 0.000414 0.002851
GO:0005488 binding 32.1% (78/243) 0.51 0.000403 0.002864
GO:0019374 galactolipid metabolic process 0.82% (2/243) 6.04 0.000443 0.0029
GO:0035250 UDP-galactosyltransferase activity 0.82% (2/243) 6.04 0.000443 0.0029
GO:0019375 galactolipid biosynthetic process 0.82% (2/243) 6.04 0.000443 0.0029
GO:0046481 digalactosyldiacylglycerol synthase activity 0.82% (2/243) 6.04 0.000443 0.0029
GO:0030276 clathrin binding 1.23% (3/243) 4.39 0.000428 0.002914
GO:0110165 cellular anatomical entity 26.34% (64/243) 0.58 0.000491 0.00318
GO:0004708 MAP kinase kinase activity 0.82% (2/243) 5.9 0.000542 0.003414
GO:0000165 MAPK cascade 0.82% (2/243) 5.9 0.000542 0.003414
GO:0022411 cellular component disassembly 1.65% (4/243) 3.45 0.00054 0.003466
GO:0000062 fatty-acyl-CoA binding 0.82% (2/243) 5.81 0.000609 0.003729
GO:0120227 acyl-CoA binding 0.82% (2/243) 5.81 0.000609 0.003729
GO:1901567 fatty acid derivative binding 0.82% (2/243) 5.81 0.000609 0.003729
GO:0005794 Golgi apparatus 2.47% (6/243) 2.55 0.000635 0.003817
GO:0098657 import into cell 1.65% (4/243) 3.39 0.000629 0.003817
GO:0010333 terpene synthase activity 1.23% (3/243) 4.14 0.000707 0.00421
GO:0065007 biological regulation 11.11% (27/243) 0.97 0.000741 0.00437
GO:0004712 protein serine/threonine/tyrosine kinase activity 0.82% (2/243) 5.64 0.00077 0.004503
GO:0006996 organelle organization 4.53% (11/243) 1.68 0.000782 0.004532
GO:0006810 transport 8.23% (20/243) 1.15 0.000837 0.00477
GO:0031625 ubiquitin protein ligase binding 1.23% (3/243) 4.06 0.000835 0.0048
GO:0007165 signal transduction 4.53% (11/243) 1.66 0.000859 0.004851
GO:0044389 ubiquitin-like protein ligase binding 1.23% (3/243) 4.02 0.000896 0.005017
GO:0007020 microtubule nucleation 0.82% (2/243) 5.52 0.000915 0.005081
GO:0016838 carbon-oxygen lyase activity, acting on phosphates 1.23% (3/243) 3.97 0.001001 0.005513
GO:0051603 proteolysis involved in protein catabolic process 2.88% (7/243) 2.18 0.001017 0.005553
GO:0045036 protein targeting to chloroplast 0.82% (2/243) 5.4 0.001072 0.005806
GO:0031359 obsolete integral component of chloroplast outer membrane 0.82% (2/243) 5.39 0.00109 0.00581
GO:0046467 membrane lipid biosynthetic process 1.65% (4/243) 3.18 0.001082 0.005816
GO:0009991 response to extracellular stimulus 1.23% (3/243) 3.91 0.00112 0.005876
GO:0031667 response to nutrient levels 1.23% (3/243) 3.91 0.001114 0.005889
GO:0050789 regulation of biological process 10.29% (25/243) 0.96 0.001267 0.006593
GO:0000932 P-body 1.23% (3/243) 3.79 0.001429 0.007158
GO:0032984 protein-containing complex disassembly 1.23% (3/243) 3.79 0.001422 0.007175
GO:0097708 intracellular vesicle 2.06% (5/243) 2.63 0.001417 0.007205
GO:0031410 cytoplasmic vesicle 2.06% (5/243) 2.63 0.001417 0.007205
GO:0006643 membrane lipid metabolic process 1.65% (4/243) 3.07 0.00145 0.007208
GO:0050794 regulation of cellular process 9.88% (24/243) 0.97 0.001417 0.007317
GO:1901135 carbohydrate derivative metabolic process 3.29% (8/243) 1.91 0.001509 0.007445
GO:0099080 supramolecular complex 2.06% (5/243) 2.6 0.001542 0.007548
GO:0031023 microtubule organizing center organization 0.82% (2/243) 5.12 0.00157 0.007633
GO:0003924 GTPase activity 2.06% (5/243) 2.57 0.001713 0.008265
GO:0009056 catabolic process 4.94% (12/243) 1.45 0.001808 0.008661
GO:0016879 ligase activity, forming carbon-nitrogen bonds 1.65% (4/243) 2.97 0.00186 0.008845
GO:0032446 protein modification by small protein conjugation 2.88% (7/243) 2.02 0.001918 0.009054
GO:0035770 ribonucleoprotein granule 1.23% (3/243) 3.6 0.002061 0.009145
GO:0006670 sphingosine metabolic process 0.82% (2/243) 4.92 0.00206 0.009199
GO:0046512 sphingosine biosynthetic process 0.82% (2/243) 4.92 0.00206 0.009199
GO:0046520 sphingoid biosynthetic process 0.82% (2/243) 4.92 0.00206 0.009199
GO:0036464 cytoplasmic ribonucleoprotein granule 1.23% (3/243) 3.62 0.001977 0.009267
GO:0005525 GTP binding 2.06% (5/243) 2.51 0.002052 0.009353
GO:0032561 guanyl ribonucleotide binding 2.06% (5/243) 2.51 0.002052 0.009353
GO:0000220 vacuolar proton-transporting V-type ATPase, V0 domain 0.41% (1/243) 8.95 0.00202 0.009404
GO:0006401 RNA catabolic process 1.65% (4/243) 2.93 0.002047 0.00946
GO:0046907 intracellular transport 3.29% (8/243) 1.82 0.002181 0.009609
GO:0019001 guanyl nucleotide binding 2.06% (5/243) 2.47 0.002333 0.010212
GO:0030968 endoplasmic reticulum unfolded protein response 0.82% (2/243) 4.81 0.002394 0.010276
GO:0034312 diol biosynthetic process 0.82% (2/243) 4.81 0.002394 0.010276
GO:0034311 diol metabolic process 0.82% (2/243) 4.81 0.002394 0.010276
GO:0010349 L-galactose dehydrogenase activity 0.41% (1/243) 8.69 0.002424 0.010336
GO:0051649 establishment of localization in cell 3.29% (8/243) 1.78 0.00268 0.011356
GO:0019853 L-ascorbic acid biosynthetic process 0.41% (1/243) 8.46 0.002827 0.011753
GO:0043401 steroid hormone mediated signaling pathway 0.82% (2/243) 4.69 0.00281 0.011754
GO:0009742 brassinosteroid mediated signaling pathway 0.82% (2/243) 4.69 0.00281 0.011754
GO:0048583 regulation of response to stimulus 1.65% (4/243) 2.77 0.00304 0.012558
GO:0072596 establishment of protein localization to chloroplast 0.82% (2/243) 4.55 0.003412 0.01401
GO:0046519 sphingoid metabolic process 0.82% (2/243) 4.54 0.003444 0.014052
GO:0030234 enzyme regulator activity 2.47% (6/243) 2.06 0.00351 0.014235
GO:1901575 organic substance catabolic process 4.53% (11/243) 1.39 0.003658 0.014742
GO:0009987 cellular process 25.51% (62/243) 0.47 0.003778 0.015134
GO:0005575 cellular_component 27.16% (66/243) 0.44 0.004301 0.017125
GO:0016050 vesicle organization 1.23% (3/243) 3.19 0.004565 0.017961
GO:0004843 cysteine-type deubiquitinase activity 1.23% (3/243) 3.19 0.004549 0.018007
GO:0072598 protein localization to chloroplast 0.82% (2/243) 4.32 0.004635 0.018128
GO:0005876 spindle microtubule 0.82% (2/243) 4.32 0.004671 0.018163
GO:0098772 molecular function regulator activity 2.47% (6/243) 1.97 0.00477 0.018437
GO:0008378 galactosyltransferase activity 0.82% (2/243) 4.29 0.004818 0.018517
GO:0030170 pyridoxal phosphate binding 1.23% (3/243) 3.14 0.004996 0.01898
GO:0070279 vitamin B6 binding 1.23% (3/243) 3.14 0.004996 0.01898
GO:0006623 protein targeting to vacuole 0.82% (2/243) 4.22 0.00535 0.020207
GO:1901137 carbohydrate derivative biosynthetic process 2.06% (5/243) 2.17 0.005517 0.020719
GO:0016043 cellular component organization 5.76% (14/243) 1.12 0.005767 0.021294
GO:0101005 deubiquitinase activity 1.23% (3/243) 3.07 0.005715 0.021341
GO:0000956 nuclear-transcribed mRNA catabolic process 1.23% (3/243) 3.07 0.00575 0.021354
GO:0000266 mitochondrial fission 0.41% (1/243) 7.37 0.006049 0.022211
GO:0016567 protein ubiquitination 2.47% (6/243) 1.88 0.006408 0.0234
GO:0016579 protein deubiquitination 1.23% (3/243) 2.99 0.006725 0.024423
GO:0009707 chloroplast outer membrane 0.82% (2/243) 3.98 0.00732 0.026296
GO:0009527 plastid outer membrane 0.82% (2/243) 3.98 0.00732 0.026296
GO:0018105 peptidyl-serine phosphorylation 1.23% (3/243) 2.92 0.007706 0.027239
GO:0018209 peptidyl-serine modification 1.23% (3/243) 2.92 0.007706 0.027239
GO:0098796 membrane protein complex 2.47% (6/243) 1.82 0.007702 0.027521
GO:0005384 manganese ion transmembrane transporter activity 0.82% (2/243) 3.9 0.008149 0.02865
GO:0019783 ubiquitin-like protein peptidase activity 1.23% (3/243) 2.87 0.008427 0.029013
GO:0006508 proteolysis 3.7% (9/243) 1.39 0.008411 0.029109
GO:1901681 sulfur compound binding 0.82% (2/243) 3.88 0.008338 0.029162
GO:0046872 metal ion binding 6.17% (15/243) 1.01 0.008384 0.029168
GO:0019842 vitamin binding 1.23% (3/243) 2.82 0.00914 0.031141
GO:0006629 lipid metabolic process 4.12% (10/243) 1.28 0.009098 0.031159
GO:0046173 polyol biosynthetic process 0.82% (2/243) 3.8 0.009316 0.031578
GO:0030148 sphingolipid biosynthetic process 0.82% (2/243) 3.76 0.009874 0.0333
GO:0043167 ion binding 15.23% (37/243) 0.56 0.010383 0.034489
GO:0043169 cation binding 6.17% (15/243) 0.98 0.010497 0.034519
GO:0019899 enzyme binding 1.65% (4/243) 2.26 0.010297 0.034549
GO:0006402 mRNA catabolic process 1.23% (3/243) 2.76 0.010361 0.034589
GO:0070646 protein modification by small protein removal 1.23% (3/243) 2.75 0.010488 0.034663
GO:0035556 intracellular signal transduction 2.06% (5/243) 1.94 0.010634 0.034797
GO:0031307 obsolete integral component of mitochondrial outer membrane 0.41% (1/243) 6.52 0.010861 0.03502
GO:0055074 calcium ion homeostasis 0.82% (2/243) 3.69 0.010819 0.035056
GO:0006874 intracellular calcium ion homeostasis 0.82% (2/243) 3.69 0.010819 0.035056
GO:1901564 organonitrogen compound metabolic process 12.76% (31/243) 0.62 0.011236 0.036053
GO:0072594 establishment of protein localization to organelle 1.65% (4/243) 2.2 0.011788 0.037642
GO:0030003 intracellular monoatomic cation homeostasis 1.23% (3/243) 2.68 0.011891 0.037787
GO:0071840 cellular component organization or biogenesis 5.76% (14/243) 0.97 0.013974 0.044197
GO:0010857 calcium-dependent protein kinase activity 0.82% (2/243) 3.47 0.014424 0.044972
GO:0009931 calcium-dependent protein serine/threonine kinase activity 0.82% (2/243) 3.47 0.014424 0.044972
GO:0006873 intracellular monoatomic ion homeostasis 1.23% (3/243) 2.58 0.014416 0.045377
GO:0016835 carbon-oxygen lyase activity 1.23% (3/243) 2.57 0.014724 0.04548
GO:0004683 calmodulin-dependent protein kinase activity 0.82% (2/243) 3.46 0.014668 0.045519
GO:0033365 protein localization to organelle 1.65% (4/243) 2.09 0.01532 0.046031
GO:0032587 ruffle membrane 0.41% (1/243) 6.02 0.015252 0.046035
GO:1900027 regulation of ruffle assembly 0.41% (1/243) 6.02 0.015252 0.046035
GO:0060491 regulation of cell projection assembly 0.41% (1/243) 6.02 0.015252 0.046035
GO:0120032 regulation of plasma membrane bounded cell projection assembly 0.41% (1/243) 6.02 0.015252 0.046035
GO:0006665 sphingolipid metabolic process 0.82% (2/243) 3.44 0.015038 0.046232
GO:0072666 establishment of protein localization to vacuole 0.82% (2/243) 3.4 0.015662 0.046634
GO:0072665 protein localization to vacuole 0.82% (2/243) 3.4 0.015662 0.046634
GO:0031256 leading edge membrane 0.41% (1/243) 5.95 0.016049 0.046938
GO:0022834 ligand-gated channel activity 0.82% (2/243) 3.39 0.015979 0.046942
GO:0015276 ligand-gated monoatomic ion channel activity 0.82% (2/243) 3.39 0.015979 0.046942
GO:0000041 transition metal ion transport 0.82% (2/243) 3.39 0.015915 0.047175
GO:0120035 regulation of plasma membrane bounded cell projection organization 0.41% (1/243) 5.91 0.016446 0.047472
GO:0031253 cell projection membrane 0.41% (1/243) 5.91 0.016446 0.047472
GO:0031344 regulation of cell projection organization 0.41% (1/243) 5.91 0.016446 0.047472
GO:0070588 calcium ion transmembrane transport 0.82% (2/243) 3.34 0.017075 0.049072
GO:0051225 spindle assembly 0.82% (2/243) 3.33 0.017338 0.049611
GO:0034655 nucleobase-containing compound catabolic process 1.65% (4/243) 2.03 0.017487 0.049823
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (243) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms