Coexpression cluster: Cluster_533 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003676 nucleic acid binding 31.15% (19/61) 2.24 0.0 3e-06
GO:0005488 binding 54.1% (33/61) 1.26 0.0 1.7e-05
GO:0003674 molecular_function 65.57% (40/61) 0.89 2e-06 0.000145
GO:0097159 organic cyclic compound binding 39.34% (24/61) 1.45 1e-06 0.000189
GO:0003723 RNA binding 14.75% (9/61) 2.74 8e-06 0.000571
GO:0046983 protein dimerization activity 8.2% (5/61) 4.06 1.4e-05 0.000859
GO:0005730 nucleolus 6.56% (4/61) 4.23 6.5e-05 0.003549
GO:0006376 mRNA splice site recognition 3.28% (2/61) 7.29 7.9e-05 0.003761
GO:0005575 cellular_component 40.98% (25/61) 1.04 0.000143 0.00544
GO:0005515 protein binding 22.95% (14/61) 1.62 0.000135 0.005682
GO:0005685 U1 snRNP 3.28% (2/61) 6.58 0.000211 0.007295
GO:0009736 cytokinin-activated signaling pathway 3.28% (2/61) 6.26 0.000328 0.0089
GO:0003677 DNA binding 13.11% (8/61) 2.15 0.000414 0.009257
GO:0140110 transcription regulator activity 9.84% (6/61) 2.62 0.000439 0.00926
GO:0043226 organelle 22.95% (14/61) 1.49 0.000326 0.009519
GO:0071010 prespliceosome 3.28% (2/61) 6.11 0.000405 0.00963
GO:0071004 U2-type prespliceosome 3.28% (2/61) 6.11 0.000405 0.00963
GO:0005681 spliceosomal complex 4.92% (3/61) 4.29 0.000507 0.010144
GO:0043229 intracellular organelle 22.95% (14/61) 1.49 0.000325 0.010301
GO:0070972 protein localization to endoplasmic reticulum 3.28% (2/61) 5.62 0.000792 0.015046
GO:0005684 U2-type spliceosomal complex 3.28% (2/61) 5.3 0.001229 0.021223
GO:0031207 Sec62/Sec63 complex 1.64% (1/61) 9.68 0.001217 0.02203
GO:0003700 DNA-binding transcription factor activity 8.2% (5/61) 2.61 0.00139 0.022961
GO:0000160 phosphorelay signal transduction system 3.28% (2/61) 5.11 0.001584 0.023147
GO:0030532 small nuclear ribonucleoprotein complex 3.28% (2/61) 5.13 0.00154 0.023413
GO:0097525 spliceosomal snRNP complex 3.28% (2/61) 5.13 0.001535 0.024303
GO:0120114 Sm-like protein family complex 3.28% (2/61) 5.0 0.00185 0.02604
GO:0016120 carotene biosynthetic process 1.64% (1/61) 8.46 0.002838 0.038522
GO:0008922 long-chain fatty acid [acyl-carrier-protein] ligase activity 1.64% (1/61) 8.31 0.003142 0.041172
GO:0050794 regulation of cellular process 14.75% (9/61) 1.55 0.00337 0.042693
GO:0045293 mRNA editing complex 1.64% (1/61) 7.71 0.00476 0.048886
GO:0036396 RNA N6-methyladenosine methyltransferase complex 1.64% (1/61) 7.71 0.00476 0.048886
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (61) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms