GO:0016251: RNA polymerase II general transcription initiation factor activity (Molecular function)

"A general transcription initiation factor activity that contributes to transcription start site selection and transcription initiation of genes transcribed by RNA polymerase II. The general transcription factors for RNA polymerase II include TFIIB, TFIID, TFIIE, TFIIF, TFIIH and TATA-binding protein (TBP). In most species, RNA polymerase II transcribes all messenger RNAs (mRNAs), most untranslated regulatory RNAs, the majority of the snoRNAs, four of the five snRNAs (U1, U2, U4, and U5), and other small noncoding RNAs. For some small RNAs there is variability between species as to whether it is transcribed by RNA polymerase II or RNA polymerase III. However there are also rare exceptions, such as Trypanosoma brucei, where RNA polymerase I transcribes certain mRNAs in addition to its normal role in rRNA transcription." [GOC:txnOH-2018, PMID:10384286, PMID:10747032, PMID:23442138, PMID:25693126]


There are 7521 sequences with this label.

Enriched clusters
Name Species % in cluster p-value corrected p-value action
Cluster_6262 Sugarcane pan-transcriptome v1 66.67 % 1e-06 5e-06
Cluster_2030 Sugarcane pan-transcriptome v1 33.33 % 0.001477 0.013293
Cluster_2504 Sugarcane pan-transcriptome v1 50.0 % 0.000985 0.032502
Cluster_6498 Sugarcane pan-transcriptome v1 100.0 % 0.0 2e-06
Cluster_1180 Sugarcane pan-transcriptome v1 50.0 % 0.000985 0.006137
Cluster_1984 Sugarcane pan-transcriptome v1 50.0 % 0.000985 0.010957
Cluster_7495 Sugarcane pan-transcriptome v1 50.0 % 0.000985 0.012475
Cluster_442 Sugarcane pan-transcriptome v1 2.0 % 0.001159 0.018151
Cluster_817 Sugarcane pan-transcriptome v1 2.74 % 0.000621 0.003839
Cluster_5011 Sugarcane pan-transcriptome v1 33.33 % 4e-06 2e-05
Cluster_6888 Sugarcane pan-transcriptome v1 50.0 % 0.000985 0.01543
Cluster_703 Sugarcane pan-transcriptome v1 3.61 % 1.1e-05 0.000328
Cluster_6883 Sugarcane pan-transcriptome v1 7.69 % 0.006385 0.034244
Cluster_758 Sugarcane pan-transcriptome v1 7.25 % 0.0 0.0
Cluster_8413 Sugarcane pan-transcriptome v1 50.0 % 0.000985 0.007141
Cluster_778 Sugarcane pan-transcriptome v1 2.25 % 0.00092 0.005135
Cluster_3365 Sugarcane pan-transcriptome v1 50.0 % 0.000985 0.01543
Cluster_849 Sugarcane pan-transcriptome v1 3.3 % 1.4e-05 0.000877
Cluster_161 Setaria viridis 0.85 % 0.003078 0.013033
Cluster_96 Brachypodium distachyon 1.11 % 0.002774 0.019802
Cluster_178 Oryza sativa 0.47 % 0.005072 0.020878
Cluster_126 Oryza sativa 1.05 % 0.002252 0.021326
Cluster_6744 Sugarcane pan-transcriptome v1 33.33 % 0.001477 0.02117
Cluster_6019 Sugarcane pan-transcriptome v1 50.0 % 0.000985 0.014117
Cluster_1424 Sugarcane pan-transcriptome v1 2.25 % 0.00092 0.017679
Cluster_6462 Sugarcane pan-transcriptome v1 50.0 % 0.000985 0.015758
Cluster_8782 Sugarcane pan-transcriptome v1 50.0 % 0.000985 0.010068
Cluster_3414 Sugarcane pan-transcriptome v1 50.0 % 0.000985 0.016087
Cluster_8673 Sugarcane pan-transcriptome v1 50.0 % 0.000985 0.011449
Cluster_4291 Sugarcane pan-transcriptome v1 50.0 % 0.000985 0.010607
Cluster_6149 Sugarcane pan-transcriptome v1 50.0 % 0.000985 0.006675
Cluster_5871 Sugarcane pan-transcriptome v1 50.0 % 0.000985 0.006402
Cluster_4900 Sugarcane pan-transcriptome v1 50.0 % 0.000985 0.006402
Cluster_5416 Sugarcane pan-transcriptome v1 50.0 % 0.000985 0.018713
Cluster_8875 Sugarcane pan-transcriptome v1 33.33 % 0.001477 0.034709
Cluster_7620 Sugarcane pan-transcriptome v1 50.0 % 0.000985 0.003632
Cluster_9895 Sugarcane pan-transcriptome v1 50.0 % 0.000985 0.019698
Cluster_9238 Sugarcane pan-transcriptome v1 50.0 % 0.000985 0.017728
Cluster_6009 Sugarcane pan-transcriptome v1 50.0 % 0.000985 0.006613
Cluster_8895 Sugarcane pan-transcriptome v1 50.0 % 0.000985 0.004577
Cluster_9748 Sugarcane pan-transcriptome v1 50.0 % 0.000985 0.006402
Cluster_8226 Sugarcane pan-transcriptome v1 50.0 % 0.000985 0.011326
Cluster_4831 Sugarcane pan-transcriptome v1 50.0 % 0.000985 0.006279
Cluster_8589 Sugarcane pan-transcriptome v1 33.33 % 0.001477 0.014031
Cluster_217 Zea mays 0.61 % 0.004127 0.020376
Sequences (7521) (download table)

Info: GO-associations disabled for items with more than 300 associated sequences !
InterPro and Family associations disabled for items with more than 5000 associated sequences !