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GO:0005665: RNA polymerase II, core complex (Cellular component)

"RNA polymerase II, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces mRNAs, snoRNAs, and some of the snRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The largest subunit of RNA polymerase II contains an essential carboxyl-terminal domain (CTD) composed of a variable number of heptapeptide repeats (YSPTSPS). The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerases I and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template." [GOC:krc, GOC:mtg_sensu]


There are 7678 sequences with this label.

Enriched clusters
Name Species % in cluster p-value corrected p-value action
Cluster_585 Sugarcane pan-transcriptome v1 4.08 % 0.0004 0.002811
Cluster_698 Sugarcane pan-transcriptome v1 1.4 % 0.003326 0.01678
Cluster_7603 Sugarcane pan-transcriptome v1 50.0 % 0.001178 0.030624
Cluster_534 Sugarcane pan-transcriptome v1 4.92 % 7e-06 0.00011
Cluster_7487 Sugarcane pan-transcriptome v1 50.0 % 0.001178 0.023557
Cluster_414 Sugarcane pan-transcriptome v1 1.52 % 0.002844 0.020307
Cluster_1358 Sugarcane pan-transcriptome v1 100.0 % 0.0 6e-06
Cluster_909 Sugarcane pan-transcriptome v1 33.33 % 0.001766 0.007683
Cluster_546 Sugarcane pan-transcriptome v1 9.72 % 0.0 0.0
Cluster_806 Sugarcane pan-transcriptome v1 1.96 % 0.001714 0.017455
Cluster_10998 Sugarcane pan-transcriptome v1 50.0 % 0.001178 0.008517
Cluster_8063 Sugarcane pan-transcriptome v1 50.0 % 0.001178 0.007754
Cluster_76 Sugarcane pan-transcriptome v1 1.24 % 0.000421 0.0028
Cluster_554 Sugarcane pan-transcriptome v1 2.55 % 0.0 9e-06
Cluster_11296 Sugarcane pan-transcriptome v1 50.0 % 0.001178 0.030624
Cluster_11627 Sugarcane pan-transcriptome v1 50.0 % 0.001178 0.010208
Cluster_553 Sugarcane pan-transcriptome v1 1.44 % 0.000278 0.002467
Cluster_3061 Sugarcane pan-transcriptome v1 33.33 % 0.001766 0.025169
Cluster_882 Sugarcane pan-transcriptome v1 3.8 % 1.6e-05 0.000144
Cluster_11391 Sugarcane pan-transcriptome v1 50.0 % 0.001178 0.031212
Cluster_385 Sugarcane pan-transcriptome v1 4.76 % 0.0 2e-06
Cluster_8834 Sugarcane pan-transcriptome v1 50.0 % 0.001178 0.016784
Cluster_8720 Sugarcane pan-transcriptome v1 50.0 % 0.001178 0.030624
Cluster_2580 Sugarcane pan-transcriptome v1 33.33 % 0.001766 0.013983
Cluster_94 Setaria viridis 1.49 % 0.006973 0.041332
Cluster_22 Setaria viridis 2.17 % 3.4e-05 0.001397
Cluster_46 Setaria viridis 0.85 % 0.000225 0.016522
Cluster_106 Setaria viridis 1.3 % 0.008011 0.039421
Cluster_122 Brachypodium distachyon 1.59 % 8.9e-05 0.019612
Cluster_298 Brachypodium distachyon 1.85 % 0.006642 0.046663
Cluster_261 Oryza sativa 0.65 % 0.00724 0.023377
Cluster_291 Oryza sativa 0.85 % 0.005586 0.034991
Cluster_237 Oryza sativa 50.0 % 9.5e-05 0.002607
Cluster_141 Oryza sativa 2.04 % 0.002322 0.02544
Cluster_251 Setaria italica 1.82 % 0.006346 0.038338
Cluster_290 Sorghum bicolor 2.13 % 0.005497 0.020517
Cluster_227 Sorghum bicolor 1.33 % 1e-06 0.000362
Cluster_5320 Sugarcane pan-transcriptome v1 33.33 % 0.001766 0.025169
Cluster_1620 Sugarcane pan-transcriptome v1 3.28 % 0.000619 0.005331
Cluster_4913 Sugarcane pan-transcriptome v1 50.0 % 0.001178 0.030624
Cluster_2256 Sugarcane pan-transcriptome v1 2.3 % 0.001252 0.017059
Cluster_5893 Sugarcane pan-transcriptome v1 50.0 % 0.001178 0.016195
Cluster_8989 Sugarcane pan-transcriptome v1 50.0 % 0.001178 0.010208
Cluster_3216 Sugarcane pan-transcriptome v1 33.33 % 0.001766 0.016485
Cluster_373 Sugarcane pan-transcriptome v1 1.05 % 0.005775 0.042264
Cluster_6970 Sugarcane pan-transcriptome v1 50.0 % 0.001178 0.023557
Cluster_3215 Sugarcane pan-transcriptome v1 50.0 % 0.001178 0.018845
Cluster_1757 Sugarcane pan-transcriptome v1 2.33 % 0.001224 0.03615
Cluster_8478 Sugarcane pan-transcriptome v1 50.0 % 0.001178 0.019434
Cluster_4498 Sugarcane pan-transcriptome v1 50.0 % 0.001178 0.016784
Cluster_5744 Sugarcane pan-transcriptome v1 50.0 % 0.001178 0.016018
Cluster_141 Sugarcane pan-transcriptome v1 2.48 % 3e-06 4.3e-05
Cluster_312 Sugarcane pan-transcriptome v1 2.04 % 0.001584 0.042777
Cluster_2096 Sugarcane pan-transcriptome v1 1.39 % 0.003371 0.032008
Cluster_6608 Sugarcane pan-transcriptome v1 33.33 % 0.001766 0.032145
Cluster_9572 Sugarcane pan-transcriptome v1 33.33 % 0.001766 0.010156
Cluster_1654 Sugarcane pan-transcriptome v1 1.57 % 0.000213 0.00489
Cluster_2356 Sugarcane pan-transcriptome v1 4.26 % 0.000368 0.035776
Cluster_7669 Sugarcane pan-transcriptome v1 25.0 % 0.002354 0.033548
Cluster_5546 Sugarcane pan-transcriptome v1 50.0 % 0.001178 0.013938
Cluster_9744 Sugarcane pan-transcriptome v1 50.0 % 0.001178 0.014224
Cluster_337 Zea mays 50.0 % 0.000304 0.010481
Cluster_250 Zea mays 0.87 % 0.000494 0.004637
Cluster_311 Zea mays 1.41 % 0.010738 0.043833
Cluster_241 Zea mays 1.37 % 0.011039 0.036497
Sequences (7678) (download table)

Info: GO-associations disabled for items with more than 300 associated sequences !
InterPro and Family associations disabled for items with more than 5000 associated sequences !