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GO:0006367: transcription initiation at RNA polymerase II promoter (Biological process)

"A transcription initiation process that takes place at a RNA polymerase II gene promoter. Messenger RNAs (mRNA) genes, as well as some non-coding RNAs, are transcribed by RNA polymerase II." [GOC:mah, GOC:txnOH]


There are 9541 sequences with this label.

Enriched clusters
Name Species % in cluster p-value corrected p-value action
Cluster_493 Sugarcane pan-transcriptome v1 2.74 % 0.000544 0.002821
Cluster_2665 Sugarcane pan-transcriptome v1 33.33 % 0.001382 0.033864
Cluster_2030 Sugarcane pan-transcriptome v1 33.33 % 0.001382 0.020733
Cluster_847 Sugarcane pan-transcriptome v1 2.78 % 1.9e-05 0.0001
Cluster_1984 Sugarcane pan-transcriptome v1 50.0 % 0.000922 0.013672
Cluster_7495 Sugarcane pan-transcriptome v1 50.0 % 0.000922 0.017512
Cluster_442 Sugarcane pan-transcriptome v1 2.0 % 0.001017 0.016438
Cluster_76 Sugarcane pan-transcriptome v1 0.83 % 0.005694 0.019143
Cluster_817 Sugarcane pan-transcriptome v1 2.74 % 0.000544 0.004121
Cluster_5011 Sugarcane pan-transcriptome v1 33.33 % 3e-06 1.9e-05
Cluster_646 Sugarcane pan-transcriptome v1 2.25 % 0.000807 0.002306
Cluster_6888 Sugarcane pan-transcriptome v1 50.0 % 0.000922 0.02166
Cluster_758 Sugarcane pan-transcriptome v1 7.25 % 0.0 0.0
Cluster_2642 Sugarcane pan-transcriptome v1 25.0 % 0.001843 0.023953
Cluster_8413 Sugarcane pan-transcriptome v1 50.0 % 0.000922 0.00891
Cluster_887 Sugarcane pan-transcriptome v1 2.9 % 0.000487 0.003796
Cluster_3365 Sugarcane pan-transcriptome v1 50.0 % 0.000922 0.02166
Cluster_849 Sugarcane pan-transcriptome v1 3.3 % 1.1e-05 0.000863
Cluster_475 Setaria viridis 50.0 % 0.0012 0.025992
Cluster_23 Setaria viridis 1.14 % 0.004922 0.035529
Cluster_106 Setaria viridis 2.67 % 0.00093 0.020573
Cluster_2 Setaria viridis 0.78 % 0.010323 0.046901
Cluster_52 Setaria viridis 2.36 % 6e-05 0.002302
Cluster_489 Setaria viridis 50.0 % 0.0012 0.015195
Cluster_74 Brachypodium distachyon 1.05 % 0.004909 0.037589
Cluster_178 Oryza sativa 0.93 % 0.003714 0.018186
Cluster_238 Oryza sativa 2.35 % 0.000601 0.042553
Cluster_435 Oryza sativa 50.0 % 0.000853 0.017347
Cluster_20 Oryza sativa 0.93 % 0.003714 0.034882
Cluster_347 Oryza sativa 33.33 % 0.001279 0.032412
Cluster_127 Setaria italica 1.4 % 0.000286 0.007686
Cluster_322 Setaria italica 50.0 % 0.001214 0.03278
Cluster_218 Sorghum bicolor 1.8 % 0.001729 0.014366
Cluster_7361 Sugarcane pan-transcriptome v1 50.0 % 0.000922 0.007988
Cluster_6744 Sugarcane pan-transcriptome v1 33.33 % 0.001382 0.029718
Cluster_6019 Sugarcane pan-transcriptome v1 50.0 % 0.000922 0.019816
Cluster_4192 Sugarcane pan-transcriptome v1 50.0 % 0.000922 0.019663
Cluster_587 Sugarcane pan-transcriptome v1 2.13 % 0.0009 0.025195
Cluster_6462 Sugarcane pan-transcriptome v1 50.0 % 0.000922 0.022121
Cluster_8782 Sugarcane pan-transcriptome v1 50.0 % 0.000922 0.012114
Cluster_5893 Sugarcane pan-transcriptome v1 50.0 % 0.000922 0.016898
Cluster_9091 Sugarcane pan-transcriptome v1 50.0 % 0.000922 0.017205
Cluster_3414 Sugarcane pan-transcriptome v1 50.0 % 0.000922 0.022581
Cluster_5360 Sugarcane pan-transcriptome v1 25.0 % 0.001843 0.034394
Cluster_8673 Sugarcane pan-transcriptome v1 50.0 % 0.000922 0.014286
Cluster_4291 Sugarcane pan-transcriptome v1 50.0 % 0.000922 0.01613
Cluster_4968 Sugarcane pan-transcriptome v1 50.0 % 0.000922 0.009908
Cluster_5744 Sugarcane pan-transcriptome v1 50.0 % 0.000922 0.015669
Cluster_5416 Sugarcane pan-transcriptome v1 50.0 % 0.000922 0.026268
Cluster_3971 Sugarcane pan-transcriptome v1 2.44 % 0.000686 0.04014
Cluster_9774 Sugarcane pan-transcriptome v1 50.0 % 0.000922 0.009908
Cluster_141 Sugarcane pan-transcriptome v1 1.86 % 6.3e-05 0.000579
Cluster_7620 Sugarcane pan-transcriptome v1 50.0 % 0.000922 0.003884
Cluster_9238 Sugarcane pan-transcriptome v1 50.0 % 0.000922 0.024886
Cluster_8895 Sugarcane pan-transcriptome v1 50.0 % 0.000922 0.004854
Cluster_10171 Sugarcane pan-transcriptome v1 50.0 % 0.000922 0.009908
Cluster_8589 Sugarcane pan-transcriptome v1 33.33 % 0.001382 0.016414
Cluster_9744 Sugarcane pan-transcriptome v1 50.0 % 0.000922 0.013155
Cluster_293 Zea mays 2.94 % 0.000787 0.026517
Cluster_239 Zea mays 1.29 % 0.00399 0.018122
Sequences (9541) (download table)

Info: GO-associations disabled for items with more than 300 associated sequences !
InterPro and Family associations disabled for items with more than 5000 associated sequences !